Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009691

Physical Location & Seq

Genomic Coordinates Reverse (-)

65611217 .. 65613371

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG464300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTTTGAACAAAATGTTTATGAAATGTTTGACATAGCATCCAGGAGTGGAAGAGGCCCTCCATGTGGCACAAGGATTGTCGCAGGCCGGATTGTGAAAGAAAGCTATGGTGCTGCCAAACAGCAGCACACATTTACAATTGAAGTACTCTGGAGCAAGGGGGTGAAACCACTCCCTCCACTTCATCCCCTCCTAATCAAGGGTCGGAATCTTTACCGGTTGAAAACCTTAAGACAGAGGTGGGAAGATGAAGGGGAGAGGCAGAAAGCTTTGATGGAAAAGCACTCAAGGGGATCTCTTGCTAGGTCTGACAGAGAAGCACGGGTACAAAAGAAGGAAATGAGAGAAACTCTGAAGACAAATAGGATTTCAAGAAAGGAGCAAAAAAACAATCAGTCTCAGTTGAACTCAGCCTCTACTTTTAAATCATCTGTTCAACCTCATCAATCTTGTCCACTTGTTTATCCCGCAATGCTTCATCAATCATTTGGTCCAGGAAATACAAAAATGGGACCTCAGCAGCTGCGATTGTCTACTGATTCCACTAAAGCAGCAGCTCAAACTCACCATTCACAGAAACCAGCAACTCAACCTCAAGATGCACAGTCAGGCTTATTGATTGTCGATTGTGGAAAAGTGACAACTCAACCTCAAATGAAAAATAATACAGTTATGCAAGATAGGCACTTCAATCAAGCTTCTCAGCACCTGAAGGTTAGCAATTATGACACAGTTATGAAATTGCATAGTTATAGTGAGTTTATGGGGTTACAACCACCACCAAAGAAGACTTATCAAAAACAGTCATTGACAAGCGTGAACCACTCTCTTCCGACTAGTCCACGACGACAAAAGCAGATGTGCCGTCATTATGCTCAGGGCAGATGTTATTATGGAGACAACTGCAAATTTTCCCATGAATTGAGAGAGTTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP zf-CCCH

Protein Analysis

312

Amino Acids

35.72

Weight (kDa)

10.01

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7699	PF24766	1 - 81	1e-37	Domain of unknown function (DUF7699)
zf-CCCH_4	PF18044	287 - 306	3.9e-10	CCCH-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25690 FvH4_6g35210
malus_domestica	MD09G1177700.v1.1
prunus_persica	Prupe.3G037000_v2.0.a1
pyrus_communis	pycom09g09610
rosa_chinensis	RchiOBHm_Chr2g0146551
rosa_laevigata	RLG00000003520 RLG00000015540 RLG00000020205
rosa_multiflora	Rmu_sc0000654.1_g000028 Rmu_sc0001986.1_g000025 Rmu_sc0005157.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100050 Rroxscaffold_7G00217240
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451500 Rh2BG464300 Rh2CG438400 Rh2DG473300 Rh2DG658700 Rh6CG004000
rosa_wichuraiana	Rw2G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	533
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	908
AcuI	CTGAAG	2 cut(s)	374, 731
AfaI	GTAC	2 cut(s)	147, 327
AfiI	CCNNNNNNNGG	2 cut(s)	65, 199
AflII	CTTAAG	1 cut(s)	229
AgeI	ACCGGT	1 cut(s)	216
AgsI	TTSAA	7 cut(s)	8, 143, 223, 372, 406, 437, 691
AhlI	ACTAGT	1 cut(s)	836
AjnI	CCWGG	2 cut(s)	41, 493
AluBI	AGCT	5 cut(s)	105, 269, 523, 557, 698
AluI	AGCT	5 cut(s)	105, 269, 523, 557, 698
Alw26I	GTCTC	2 cut(s)	402, 891
AlwI	GGATC	1 cut(s)	301
AlwNI	CAGNNNCTG	2 cut(s)	523, 709
AoxI	GGCC	2 cut(s)	55, 85
ApeKI	GCWGC	6 cut(s)	113, 124, 520, 523, 551, 554
ApoI	RAATTY	1 cut(s)	908
AsiGI	ACCGGT	1 cut(s)	216
AspS9I	GGNCC	3 cut(s)	56, 491, 512
AsuHPI	GGTGA	2 cut(s)	175, 557
AvaII	GGWCC	2 cut(s)	491, 512
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BbsI	GAAGAC	2 cut(s)	362, 794
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	6 cut(s)	100, 136, 510, 532, 563, 566
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	849
BciT130I	CCWGG	2 cut(s)	43, 495
BcoDI	GTCTC	2 cut(s)	402, 891
BcuI	ACTAGT	1 cut(s)	836
BfaI	CTAG	2 cut(s)	303, 837
BfrI	CTTAAG	1 cut(s)	229
BisI	GCNGC	6 cut(s)	114, 125, 521, 524, 552, 555
BlsI	GCNGC	6 cut(s)	115, 126, 522, 525, 553, 556
BmcAI	AGTACT	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	43, 495
Bme18I	GGWCC	2 cut(s)	491, 512
BmgT120I	GGNCC	3 cut(s)	56, 491, 512
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	2 cut(s)	43, 495
BmsI	GCATC	2 cut(s)	47, 589
BpiI	GAAGAC	2 cut(s)	362, 794
BplI	GAGNNNNNCTC	2 cut(s)	334, 366
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	2 cut(s)	516, 876
BpuEI	CTTGAG	2 cut(s)	271, 579
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 199
Bse118I	RCCGGY	1 cut(s)	216
Bse3DI	GCAATG	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	43, 495
BseGI	GGATG	2 cut(s)	38, 184
BseLI	CCNNNNNNNGG	2 cut(s)	65, 199
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	5 cut(s)	413, 423, 530, 716, 890
BseXI	GCAGC	6 cut(s)	100, 136, 510, 532, 563, 566
BshFI	GGCC	2 cut(s)	57, 87
BshTI	ACCGGT	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	88, 217
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	2 cut(s)	65, 199
BsmAI	GTCTC	2 cut(s)	402, 891
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	2 cut(s)	57, 87
Bsp143I	GATC	1 cut(s)	293
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	2 cut(s)	57, 87
BspCNI	CTCAG	5 cut(s)	412, 422, 529, 715, 889
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	216
BssAI	RCCGGY	1 cut(s)	216
BssMI	GATC	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	43, 495
Bst4CI	ACNGT	5 cut(s)	606, 670, 733, 804, 936
Bst6I	CTCTTC	2 cut(s)	46, 834
BstAFI	CTTAAG	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	5 cut(s)	399, 409, 516, 702, 876
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	38, 184
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	2 cut(s)	402, 891
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	682
BstNI	CCWGG	2 cut(s)	43, 495
BstSCI	CCNGG	2 cut(s)	41, 493
BstV1I	GCAGC	6 cut(s)	100, 136, 510, 532, 563, 566
BstV2I	GAAGAC	2 cut(s)	362, 794
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	57, 87
BtsCI	GGATG	2 cut(s)	38, 184
Cac8I	GCNNGC	1 cut(s)	85
CaiI	CAGNNNCTG	2 cut(s)	523, 709
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	56, 491, 512
Csp6I	GTAC	2 cut(s)	146, 326
CspAI	ACCGGT	1 cut(s)	216
CviAII	CATG	2 cut(s)	63, 917
CviJI	RGCY	9 cut(s)	57, 87, 105, 269, 413, 523, 557, 612, 698
CviKI_1	RGCY	9 cut(s)	57, 87, 105, 269, 413, 523, 557, 612, 698
CviQI	GTAC	2 cut(s)	146, 326
DdeI	CTNAG	5 cut(s)	399, 409, 516, 702, 876
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
DraI	TTTAAA	1 cut(s)	424
Eam1104I	CTCTTC	2 cut(s)	46, 834
EarI	CTCTTC	2 cut(s)	46, 834
Eco47I	GGWCC	2 cut(s)	491, 512
Eco57I	CTGAAG	2 cut(s)	374, 731
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO109I	RGGNCCY	2 cut(s)	56, 512
EcoRII	CCWGG	2 cut(s)	41, 493
FaeI	CATG	2 cut(s)	66, 920
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	2 cut(s)	62, 916
FauI	CCCGC	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	533
Fnu4HI	GCNGC	6 cut(s)	114, 125, 521, 524, 552, 555
FokI	GGATG	2 cut(s)	25, 171
Fsp4HI	GCNGC	6 cut(s)	114, 125, 521, 524, 552, 555
FspBI	CTAG	2 cut(s)	303, 837
GluI	GCNGC	6 cut(s)	114, 125, 521, 524, 552, 555
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	57, 87
HapII	CCGG	2 cut(s)	88, 217
Hin1II	CATG	2 cut(s)	66, 920
HindIII	AAGCTT	2 cut(s)	267, 696
HinfI	GANTC	2 cut(s)	208, 539
HpaII	CCGG	2 cut(s)	88, 217
HphI	GGTGA	2 cut(s)	175, 557
Hpy166II	GTNNAC	4 cut(s)	455, 534, 820, 842
Hpy188I	TCNGA	4 cut(s)	207, 310, 354, 834
Hpy188III	TCNNGA	3 cut(s)	151, 372, 596
Hpy8I	GTNNAC	4 cut(s)	455, 534, 820, 842
Hpy99I	CGWCG	1 cut(s)	849
HpyAV	CCTTC	3 cut(s)	245, 328, 706
HpyCH4III	ACNGT	5 cut(s)	606, 670, 733, 804, 936
HpyCH4V	TGCA	4 cut(s)	602, 676, 745, 906
HpyF10VI	GCNNNNNNNGC	1 cut(s)	682
HpyF3I	CTNAG	5 cut(s)	399, 409, 516, 702, 876
Hsp92II	CATG	2 cut(s)	66, 920
Kzo9I	GATC	1 cut(s)	293
LmnI	GCTCC	2 cut(s)	153, 379
Lsp1109I	GCAGC	6 cut(s)	100, 136, 510, 532, 563, 566
LweI	GCATC	2 cut(s)	47, 589
MaeI	CTAG	2 cut(s)	303, 837
MaeIII	GTNAC	3 cut(s)	637, 768, 930
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	5 cut(s)	63, 257, 367, 799, 821
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	293
MluCI	AATT	5 cut(s)	138, 721, 740, 908, 920
MmeI	TCCRAC	2 cut(s)	185, 857
MseI	TTAA	2 cut(s)	230, 423
MslI	CAYNNNNRTG	1 cut(s)	734
MspA1I	CMGCKG	1 cut(s)	523
MspCI	CTTAAG	1 cut(s)	229
MspI	CCGG	2 cut(s)	88, 217
MspR9I	CCNGG	2 cut(s)	43, 495
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	2 cut(s)	43, 495
MwoI	GCNNNNNNNGC	1 cut(s)	682
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	66, 920
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	637
PfeI	GAWTC	2 cut(s)	208, 539
PfoI	TCCNGGA	2 cut(s)	41, 493
PinAI	ACCGGT	1 cut(s)	216
PkrI	GCNGC	6 cut(s)	115, 126, 522, 525, 553, 556
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	41, 493
PspGI	CCWGG	2 cut(s)	41, 493
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	3 cut(s)	56, 491, 512
PspPPI	RGGWCCY	1 cut(s)	512
PstNI	CAGNNNCTG	2 cut(s)	523, 709
PsuI	RGATCY	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	2 cut(s)	147, 327
RsaNI	GTAC	2 cut(s)	146, 326
RseI	CAYNNNNRTG	1 cut(s)	734
SaqAI	TTAA	2 cut(s)	230, 423
SatI	GCNGC	6 cut(s)	114, 125, 521, 524, 552, 555
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	3 cut(s)	56, 491, 512
ScaI	AGTACT	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	43, 495
SfaNI	GCATC	2 cut(s)	47, 589
SinI	GGWCC	2 cut(s)	491, 512
SmiMI	CAYNNNNRTG	1 cut(s)	734
SmlI	CTYRAG	3 cut(s)	229, 286, 594
SmoI	CTYRAG	3 cut(s)	229, 286, 594
SpeI	ACTAGT	1 cut(s)	836
Sse9I	AATT	5 cut(s)	138, 721, 740, 908, 920
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	2 cut(s)	303, 837
StyD4I	CCNGG	2 cut(s)	41, 493
TaaI	ACNGT	5 cut(s)	606, 670, 733, 804, 936
TaqI	TCGA	1 cut(s)	624
TasI	AATT	5 cut(s)	138, 721, 740, 908, 920
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	208, 539
Tru1I	TTAA	2 cut(s)	230, 423
Tru9I	TTAA	2 cut(s)	230, 423
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	6 cut(s)	113, 124, 520, 523, 551, 554
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	7 cut(s)	36, 173, 264, 467, 671, 752, 933
Vha464I	CTTAAG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	491, 512
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	908
XmiI	GTMKAC	1 cut(s)	533
XspI	CTAG	2 cut(s)	303, 837
ZrmI	AGTACT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.