Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009691

Physical Location & Seq

Genomic Coordinates Reverse (-)

67641790 .. 67643251

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015540

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGTGTTGTGTACATAGAAGATTACATTCCTATCAGGTTGTTACGGCTTGCCCCAGATATCACAAGGAGTAAGGAAAGAGAAGGCGAAGGCGAAGGCGGTCCTGGTACCGGTACTCTCACCAACAGAGCTTCTAGAAGCCGGCAAGAAGGAATGAATTTTGGAAAGGATGCAAATAATAAGAGTGAGATTGTATCCTTAGGAATTGGAGAAGAATTATGTTGTATTGGTGATGCTCATGGAGTAGCTGTTGTTGTTTACTTGTTGACAGATTATTCAAGGACATGCGTGGCCAGCATCCCTCATCAAATCTCCTCACCTCTCACCTTCAAGTTATTGCATCCCAAACCTGCCTTCCAAAAGGAATTTGCAATGAGGGTGACAAGCTCTGCTGTCGTCTTACGGCCAACACCCAACGCCTGCCTCAAGTATCTCATCATACATGATGTAGCCAATGTGCAACAGCAAGTGTTCGCATCTGCCGCCAACCAACGTAATTACCTGATTGTTCTATTGGATCCATTCTGGATTTTTAATGGTGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0001708 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0022613 GO:0030154 GO:0031167 GO:0031323 GO:0031325 GO:0031974 GO:0031981 GO:0032259 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051301 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090069 GO:0090070 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:2000232 GO:2000234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

183

Amino Acids

20.03

Weight (kDa)

6.9

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25690 FvH4_6g35210
malus_domestica	MD09G1177700.v1.1
prunus_persica	Prupe.3G037000_v2.0.a1
pyrus_communis	pycom09g09610
rosa_chinensis	RchiOBHm_Chr2g0146551
rosa_laevigata	RLG00000003520 RLG00000015540 RLG00000020205
rosa_multiflora	Rmu_sc0000654.1_g000028 Rmu_sc0001986.1_g000025 Rmu_sc0005157.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100050 Rroxscaffold_7G00217240
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451500 Rh2BG464300 Rh2CG438400 Rh2DG473300 Rh2DG658700 Rh6CG004000
rosa_wichuraiana	Rw2G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
Acc65I	GGTACC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	2 cut(s)	99, 483
AclWI	GGATC	2 cut(s)	512, 525
AcoI	YGGCCR	2 cut(s)	291, 404
AcsI	RAATTY	2 cut(s)	157, 365
AfaI	GTAC	3 cut(s)	14, 109, 115
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	279, 331
AjnI	CCWGG	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	3 cut(s)	131, 248, 387
AluI	AGCT	3 cut(s)	131, 248, 387
AlwI	GGATC	2 cut(s)	512, 525
AoxI	GGCC	2 cut(s)	291, 404
ApoI	RAATTY	2 cut(s)	157, 365
AsiGI	ACCGGT	1 cut(s)	110
Asp718I	GGTACC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	5 cut(s)	112, 242, 309, 316, 391
AvaII	GGWCC	1 cut(s)	101
AxyI	CCTNAGG	1 cut(s)	199
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	107
BceAI	ACGGC	2 cut(s)	62, 419
BciT130I	CCWGG	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	358
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	109, 519
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	5 cut(s)	160, 223, 306, 349, 485
BpuEI	CTTGAG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse118I	RCCGGY	2 cut(s)	110, 141
Bse21I	CCTNAGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	105
BseGI	GGATG	3 cut(s)	175, 297, 340
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	293, 406
BshNI	GGYRCC	1 cut(s)	107
BshTI	ACCGGT	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	111, 142
BslI	CCNNNNNNNGG	1 cut(s)	110
BsnI	GGCC	2 cut(s)	293, 406
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	2 cut(s)	99, 483
BspANI	GGCC	2 cut(s)	293, 406
BspLI	GGNNCC	2 cut(s)	109, 519
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	2 cut(s)	512, 525
BspT107I	GGYRCC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	2 cut(s)	110, 141
BsrGI	TGTACA	1 cut(s)	12
BssAI	RCCGGY	2 cut(s)	110, 141
BssMI	GATC	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	105
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	4 cut(s)	51, 143, 295, 421
BstDEI	CTNAG	1 cut(s)	199
BstF5I	GGATG	3 cut(s)	175, 297, 340
BstKTI	GATC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 482
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
Bsu36I	CCTNAGG	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	293, 406
BtsCI	GGATG	3 cut(s)	175, 297, 340
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	4 cut(s)	51, 143, 295, 421
Cfr10I	RCCGGY	2 cut(s)	110, 141
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	13, 108, 114
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	3 cut(s)	239, 285, 443
CviJI	RGCY	8 cut(s)	49, 131, 141, 248, 293, 387, 406, 452
CviKI_1	RGCY	8 cut(s)	49, 131, 141, 248, 293, 387, 406, 452
CviQI	GTAC	3 cut(s)	13, 108, 114
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
EaeI	YGGCCR	2 cut(s)	291, 404
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	101
Eco81I	CCTNAGG	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	61
FaeI	CATG	3 cut(s)	242, 288, 446
FaiI	YATR	6 cut(s)	17, 220, 240, 286, 440, 444
FatI	CATG	3 cut(s)	238, 284, 442
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	3 cut(s)	182, 284, 327
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	1 cut(s)	483
HaeIII	GGCC	2 cut(s)	293, 406
HapII	CCGG	2 cut(s)	111, 142
Hin1II	CATG	3 cut(s)	242, 288, 446
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HpaII	CCGG	2 cut(s)	111, 142
HphI	GGTGA	5 cut(s)	112, 242, 309, 316, 391
Hpy166II	GTNNAC	3 cut(s)	13, 259, 267
Hpy188III	TCNNGA	2 cut(s)	135, 526
Hpy8I	GTNNAC	3 cut(s)	13, 259, 267
HpyAV	CCTTC	6 cut(s)	77, 83, 89, 143, 337, 364
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	4 cut(s)	173, 340, 371, 460
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 482
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	3 cut(s)	242, 288, 446
KpnI	GGTACC	1 cut(s)	111
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	517
LweI	GCATC	5 cut(s)	160, 223, 306, 349, 485
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	42, 379
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	2 cut(s)	32, 224
MflI	RGATCY	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	5 cut(s)	157, 204, 215, 365, 496
MluNI	TGGCCA	1 cut(s)	293
MnlI	CCTC	5 cut(s)	312, 325, 330, 369, 434
Mox20I	TGGCCA	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	2 cut(s)	111, 142
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	294, 482
NaeI	GCCGGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	517
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	3 cut(s)	242, 288, 446
NlaIV	GGNNCC	2 cut(s)	109, 519
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	288
PdiI	GCCGGC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	484
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	109, 519
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	3 cut(s)	14, 109, 115
RsaNI	GTAC	3 cut(s)	13, 108, 114
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	9 cut(s)	41, 133, 250, 322, 329, 352, 389, 496, 504
SfaNI	GCATC	5 cut(s)	160, 223, 306, 349, 485
SinI	GGWCC	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	5 cut(s)	157, 204, 215, 365, 496
SsiI	CCGC	2 cut(s)	99, 483
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	103
TaiI	ACGT	1 cut(s)	496
TasI	AATT	5 cut(s)	157, 204, 215, 365, 496
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	2 cut(s)	157, 365
XbaI	TCTAGA	1 cut(s)	134
XceI	RCATGY	1 cut(s)	288
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.