Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009691

Physical Location & Seq

Genomic Coordinates Reverse (-)

64196913 .. 64200065

Gene Structure 3153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51627

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGCTTCTGTCACCCAGCAATCCAAACATCATCAATATCTTGAAAAGGGTGAAGATTTCTCAGAAAGCGGAGGATCCGACCCGGGATACGATTCCGATGATTCGGTTGAGGACCCGAGTTACAGCACTCTTGAAGAAATCCATACCCACTTCTCAAACCTCTCCATCGACAGTAAACCCAAGGCCCGTATGGTGGAGGTTCTTGATCTTGAATCAGACCTTGATGGGGAGGAGGTGGTTGTGCCTGAGCTTAATCAGAACGATGCTAAAAGCTATGAGCATGTCCAAAAGATGATTCAAGACGAACAGATTGGTAAACTGAAAGTGGAGCAATGTAAGCTCTACTTGAGGAAAAATGGGTTGAGACTGACTGGCAATAAGGACACGCTCATTCAGCGGATTAAGGAGCATCTAGAGATTTTGAATGGTGGAGGTGAGAAGAAGTACCCTGCATCTAGCTTTGTTTTGAATTGCAAAGGTGATGCATGCACCGGCGATGTTGTCATGTTTGAACAAAATGTTTATGAAATGTTTGACATAGCATCCAGGAGTGGAAGAGGCCCTCCATGTGGCACAAGGATTGTCACAGGCCGGATTGTGAAAGAAAGCTATGGTGCTGCCAAACAGCAGCACACATTTACAATTGAAGTACTCTGGAGCAAGGGGGTGAAACCACTCCCTCCACTTCATCCCCTCCTAATCAAGGGTCGGAATCTTTACCGGTTGAAAACCTTAAGACAGAGGTGGGAAGATGACGGGGAGAGGCAGAAAGCTTTGATGGAAAAGCACTCAAGGGGATCTCTTGCTAGGTCTGACAGAGAAGCACGGGTACAAAAGAAGGAAATGAGAGAAACTCTGAAGACAAATAGGATTTCAAGAAAGGAGCAAAAAAACAATCAGTCTCAGTTGAACTCAGCCTCTACTTTTAAATCATCTGTTCAACCTCATCAATCTTGTCCACTTGTTTATCCCGCAATGCTTCATCAATCATTTGGTCCAGGAAATACAAAAATGGGACCTCAGCAGCTGCGATTGTCTACTGATTCCACTAAAGCAGCAGCTCAAACTCACCATTCACAGAAACCAGCAACTCAACCTCAAGATGCACAGTCAGGCTTATTGATTGTCGATTGTGGAAAAGTGACAACTCAACCTCAAATGAAAAATAATACAGTTATGCAAGATAGGCACTTCAATCAAGCTTCTCAGCACCTGAAGGTTAGCAATTATGACACAGTTATGAAATTGCATAGTTATAGTGAGTTTATGGGGTTACCACCACCACCAAAGAAGACTTATCAAAAACAGTCATTGACAAGCGTGAACCACTCTCTTCCGACTAGTCCACGACGACAAAAGCAGATGTGCCGTCATTATGCTCAGGGCAGATGTTATTATGGAGACAACTGCAAATTTTCCCATGAATTGAGAGAGTTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP zf-CCCH

Protein Analysis

480

Amino Acids

54.44

Weight (kDa)

9.08

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	104 - 139	1.5e-09	SAP domain
DUF7699	PF24766	163 - 249	2.1e-42	Domain of unknown function (DUF7699)
zf-CCCH_4	PF18044	455 - 474	6.6e-10	CCCH-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25690 FvH4_6g35210
malus_domestica	MD09G1177700.v1.1
prunus_persica	Prupe.3G037000_v2.0.a1
pyrus_communis	pycom09g09610
rosa_chinensis	RchiOBHm_Chr2g0146551
rosa_laevigata	RLG00000003520 RLG00000015540 RLG00000020205
rosa_multiflora	Rmu_sc0000654.1_g000028 Rmu_sc0001986.1_g000025 Rmu_sc0005157.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100050 Rroxscaffold_7G00217240
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451500 Rh2BG464300 Rh2CG438400 Rh2DG473300 Rh2DG658700 Rh6CG004000
rosa_wichuraiana	Rw2G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1037
AciI	CCGC	3 cut(s)	69, 397, 972
AclWI	GGATC	3 cut(s)	69, 82, 805
AcsI	RAATTY	1 cut(s)	1412
AcuI	CTGAAG	2 cut(s)	878, 1235
AfaI	GTAC	3 cut(s)	446, 651, 831
AfiI	CCNNNNNNNGG	4 cut(s)	193, 226, 569, 703
AflII	CTTAAG	1 cut(s)	733
AgeI	ACCGGT	1 cut(s)	720
AhlI	ACTAGT	1 cut(s)	1340
AjnI	CCWGG	2 cut(s)	545, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	9 cut(s)	250, 273, 340, 459, 609, 773, 1027, 1061, 1202
AluI	AGCT	9 cut(s)	250, 273, 340, 459, 609, 773, 1027, 1061, 1202
Alw26I	GTCTC	3 cut(s)	358, 906, 1395
AlwI	GGATC	3 cut(s)	69, 82, 805
AlwNI	CAGNNNCTG	2 cut(s)	1027, 1213
Ama87I	CYCGRG	2 cut(s)	82, 115
AoxI	GGCC	3 cut(s)	183, 559, 589
ApeKI	GCWGC	6 cut(s)	617, 628, 1024, 1027, 1055, 1058
ApoI	RAATTY	1 cut(s)	1412
AsiGI	ACCGGT	1 cut(s)	720
AspS9I	GGNCC	5 cut(s)	112, 184, 560, 995, 1016
AsuC2I	CCSGG	2 cut(s)	83, 84
AsuHPI	GGTGA	6 cut(s)	4, 62, 446, 491, 679, 1061
AvaI	CYCGRG	2 cut(s)	82, 115
AvaII	GGWCC	3 cut(s)	112, 995, 1016
BamHI	GGATCC	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	813, 845
BbsI	GAAGAC	2 cut(s)	866, 1298
BbvCI	CCTCAGC	1 cut(s)	1020
BbvI	GCAGC	6 cut(s)	604, 640, 1014, 1036, 1067, 1070
BccI	CCATC	3 cut(s)	173, 218, 772
BceAI	ACGGC	1 cut(s)	1353
BciT130I	CCWGG	2 cut(s)	547, 999
BciVI	GTATCC	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	83, 84
BcoDI	GTCTC	3 cut(s)	358, 906, 1395
BcuI	ACTAGT	1 cut(s)	1340
BfaI	CTAG	4 cut(s)	413, 456, 807, 1341
BfrI	CTTAAG	1 cut(s)	733
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	6 cut(s)	618, 629, 1025, 1028, 1056, 1059
BlsI	GCNGC	6 cut(s)	619, 630, 1026, 1029, 1057, 1060
BmcAI	AGTACT	1 cut(s)	651
Bme1390I	CCNGG	4 cut(s)	83, 84, 547, 999
Bme18I	GGWCC	3 cut(s)	112, 995, 1016
BmeT110I	CYCGRG	2 cut(s)	82, 115
BmgT120I	GGNCC	5 cut(s)	112, 184, 560, 995, 1016
BmiI	GGNNCC	3 cut(s)	76, 114, 1017
BmrFI	CCNGG	4 cut(s)	83, 84, 547, 999
BmsI	GCATC	6 cut(s)	253, 418, 461, 472, 551, 1093
BpiI	GAAGAC	2 cut(s)	866, 1298
BplI	GAGNNNNNCTC	2 cut(s)	838, 870
BpmI	CTGGAG	1 cut(s)	676
Bpu10I	CCTNAGC	3 cut(s)	246, 1020, 1380
BpuEI	CTTGAG	3 cut(s)	367, 775, 1083
BpuMI	CCSGG	2 cut(s)	83, 84
BsaJI	CCNNGG	2 cut(s)	82, 180
BsaWI	WCCGGW	1 cut(s)	720
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 226, 569, 703
Bse118I	RCCGGY	2 cut(s)	491, 720
Bse1I	ACTGG	1 cut(s)	376
Bse3DI	GCAATG	2 cut(s)	338, 981
BseBI	CCWGG	2 cut(s)	547, 999
BseDI	CCNNGG	2 cut(s)	82, 180
BseGI	GGATG	2 cut(s)	542, 688
BseLI	CCNNNNNNNGG	4 cut(s)	193, 226, 569, 703
BseMI	GCAATG	2 cut(s)	338, 981
BseMII	CTCAG	7 cut(s)	75, 237, 917, 927, 1034, 1220, 1394
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	6 cut(s)	604, 640, 1014, 1036, 1067, 1070
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	3 cut(s)	185, 561, 591
BshTI	ACCGGT	1 cut(s)	720
BsiHKCI	CYCGRG	2 cut(s)	82, 115
BsiSI	CCGG	4 cut(s)	83, 492, 592, 721
BslFI	GGGAC	1 cut(s)	1029
BslI	CCNNNNNNNGG	4 cut(s)	193, 226, 569, 703
BsmAI	GTCTC	3 cut(s)	358, 906, 1395
BsmFI	GGGAC	1 cut(s)	1029
BsnI	GGCC	3 cut(s)	185, 561, 591
BsoBI	CYCGRG	2 cut(s)	82, 115
Bsp143I	GATC	3 cut(s)	74, 205, 797
BspACI	CCGC	3 cut(s)	69, 397, 972
BspANI	GGCC	3 cut(s)	185, 561, 591
BspCNI	CTCAG	7 cut(s)	74, 238, 916, 926, 1033, 1219, 1393
BspLI	GGNNCC	3 cut(s)	76, 114, 1017
BspPI	GGATC	3 cut(s)	69, 82, 805
BspTI	CTTAAG	1 cut(s)	733
BsrDI	GCAATG	2 cut(s)	338, 981
BsrFI	RCCGGY	2 cut(s)	491, 720
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	2 cut(s)	491, 720
BssECI	CCNNGG	2 cut(s)	82, 180
BssMI	GATC	3 cut(s)	74, 205, 797
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	547, 999
Bst4CI	ACNGT	6 cut(s)	173, 1110, 1174, 1237, 1308, 1440
Bst6I	CTCTTC	2 cut(s)	550, 1338
BstAFI	CTTAAG	1 cut(s)	733
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	7 cut(s)	61, 246, 903, 913, 1020, 1206, 1380
BstEII	GGTNACC	1 cut(s)	1272
BstENI	CCTNNNNNAGG	1 cut(s)	701
BstF5I	GGATG	2 cut(s)	542, 688
BstKTI	GATC	3 cut(s)	77, 208, 800
BstMAI	GTCTC	3 cut(s)	358, 906, 1395
BstMBI	GATC	3 cut(s)	74, 205, 797
BstMWI	GCNNNNNNNGC	3 cut(s)	337, 394, 1186
BstNI	CCWGG	2 cut(s)	547, 999
BstNSI	RCATGY	2 cut(s)	284, 489
BstPI	GGTNACC	1 cut(s)	1272
BstSCI	CCNGG	4 cut(s)	81, 82, 545, 997
BstV1I	GCAGC	6 cut(s)	604, 640, 1014, 1036, 1067, 1070
BstV2I	GAAGAC	2 cut(s)	866, 1298
BstX2I	RGATCY	2 cut(s)	74, 797
BstYI	RGATCY	2 cut(s)	74, 797
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	3 cut(s)	185, 561, 591
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	542, 688
Cac8I	GCNNGC	1 cut(s)	487
CaiI	CAGNNNCTG	2 cut(s)	1027, 1213
Cfr10I	RCCGGY	2 cut(s)	491, 720
Cfr13I	GGNCC	5 cut(s)	112, 184, 560, 995, 1016
Cfr9I	CCCGGG	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	445, 650, 830
CspAI	ACCGGT	1 cut(s)	720
CviAII	CATG	5 cut(s)	281, 486, 505, 567, 1421
CviQI	GTAC	3 cut(s)	445, 650, 830
DdeI	CTNAG	7 cut(s)	61, 246, 903, 913, 1020, 1206, 1380
DpnI	GATC	3 cut(s)	76, 207, 799
DpnII	GATC	3 cut(s)	74, 205, 797
DraI	TTTAAA	1 cut(s)	928
Eam1104I	CTCTTC	2 cut(s)	550, 1338
EarI	CTCTTC	2 cut(s)	550, 1338
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	3 cut(s)	112, 995, 1016
Eco57I	CTGAAG	2 cut(s)	878, 1235
Eco88I	CYCGRG	2 cut(s)	82, 115
Eco91I	GGTNACC	1 cut(s)	1272
EcoNI	CCTNNNNNAGG	1 cut(s)	701
EcoO109I	RGGNCCY	3 cut(s)	112, 560, 1016
EcoO65I	GGTNACC	1 cut(s)	1272
EcoRII	CCWGG	2 cut(s)	545, 997
EcoT14I	CCWWGG	1 cut(s)	180
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	5 cut(s)	284, 489, 508, 570, 1424
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	1029
FatI	CATG	5 cut(s)	280, 485, 504, 566, 1420
FauI	CCCGC	1 cut(s)	979
FblI	GTMKAC	1 cut(s)	1037
Fnu4HI	GCNGC	6 cut(s)	618, 629, 1025, 1028, 1056, 1059
FokI	GGATG	2 cut(s)	529, 675
Fsp4HI	GCNGC	6 cut(s)	618, 629, 1025, 1028, 1056, 1059
FspBI	CTAG	4 cut(s)	413, 456, 807, 1341
GluI	GCNGC	6 cut(s)	618, 629, 1025, 1028, 1056, 1059
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	676
HaeIII	GGCC	3 cut(s)	185, 561, 591
HapII	CCGG	4 cut(s)	83, 492, 592, 721
Hin1II	CATG	5 cut(s)	284, 489, 508, 570, 1424
HindIII	AAGCTT	2 cut(s)	771, 1200
HinfI	GANTC	6 cut(s)	92, 101, 212, 295, 712, 1043
HpaII	CCGG	4 cut(s)	83, 492, 592, 721
HphI	GGTGA	6 cut(s)	4, 62, 446, 491, 679, 1061
Hpy166II	GTNNAC	6 cut(s)	176, 317, 959, 1038, 1324, 1346
Hpy188I	TCNGA	9 cut(s)	64, 79, 97, 217, 258, 711, 814, 858, 1338
Hpy188III	TCNNGA	9 cut(s)	41, 131, 203, 209, 299, 413, 655, 876, 1100
Hpy8I	GTNNAC	6 cut(s)	176, 317, 959, 1038, 1324, 1346
Hpy99I	CGWCG	1 cut(s)	1353
HpyAV	CCTTC	2 cut(s)	832, 1210
HpyCH4III	ACNGT	6 cut(s)	173, 1110, 1174, 1237, 1308, 1440
HpyCH4V	TGCA	8 cut(s)	452, 474, 485, 489, 1106, 1180, 1249, 1410
HpyF10VI	GCNNNNNNNGC	3 cut(s)	337, 394, 1186
HpyF3I	CTNAG	7 cut(s)	61, 246, 903, 913, 1020, 1206, 1380
Hsp92II	CATG	5 cut(s)	284, 489, 508, 570, 1424
Kzo9I	GATC	3 cut(s)	74, 205, 797
LmnI	GCTCC	4 cut(s)	328, 406, 657, 883
Lsp1109I	GCAGC	6 cut(s)	604, 640, 1014, 1036, 1067, 1070
LweI	GCATC	6 cut(s)	253, 418, 461, 472, 551, 1093
MaeI	CTAG	4 cut(s)	413, 456, 807, 1341
MaeIII	GTNAC	6 cut(s)	10, 119, 583, 1141, 1272, 1434
MalI	GATC	3 cut(s)	76, 207, 799
MboI	GATC	3 cut(s)	74, 205, 797
MboII	GAAGA	8 cut(s)	65, 146, 451, 567, 761, 871, 1303, 1325
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	2 cut(s)	74, 797
MluCI	AATT	6 cut(s)	469, 642, 1225, 1244, 1412, 1424
MmeI	TCCRAC	3 cut(s)	102, 689, 1361
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	4 cut(s)	252, 402, 734, 927
MslI	CAYNNNNRTG	1 cut(s)	1238
MspA1I	CMGCKG	2 cut(s)	397, 1027
MspCI	CTTAAG	1 cut(s)	733
MspI	CCGG	4 cut(s)	83, 492, 592, 721
MspR9I	CCNGG	4 cut(s)	83, 84, 547, 999
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	2 cut(s)	547, 999
MwoI	GCNNNNNNNGC	3 cut(s)	337, 394, 1186
NciI	CCSGG	2 cut(s)	83, 84
NdeII	GATC	3 cut(s)	74, 205, 797
NlaIII	CATG	5 cut(s)	284, 489, 508, 570, 1424
NlaIV	GGNNCC	3 cut(s)	76, 114, 1017
NmuCI	GTSAC	3 cut(s)	10, 583, 1141
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	2 cut(s)	284, 489
PaeI	GCATGC	1 cut(s)	489
PfeI	GAWTC	6 cut(s)	92, 101, 212, 295, 712, 1043
PfoI	TCCNGGA	2 cut(s)	545, 997
PinAI	ACCGGT	1 cut(s)	720
PkrI	GCNGC	6 cut(s)	619, 630, 1026, 1029, 1057, 1060
PpuMI	RGGWCCY	2 cut(s)	112, 1016
Psp5II	RGGWCCY	2 cut(s)	112, 1016
Psp6I	CCWGG	2 cut(s)	545, 997
PspEI	GGTNACC	1 cut(s)	1272
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	545, 997
PspN4I	GGNNCC	3 cut(s)	76, 114, 1017
PspPI	GGNCC	5 cut(s)	112, 184, 560, 995, 1016
PspPPI	RGGWCCY	2 cut(s)	112, 1016
PstNI	CAGNNNCTG	2 cut(s)	1027, 1213
PsuI	RGATCY	2 cut(s)	74, 797
PvuII	CAGCTG	1 cut(s)	1027
RsaI	GTAC	3 cut(s)	446, 651, 831
RsaNI	GTAC	3 cut(s)	445, 650, 830
RseI	CAYNNNNRTG	1 cut(s)	1238
SaqAI	TTAA	4 cut(s)	252, 402, 734, 927
SatI	GCNGC	6 cut(s)	618, 629, 1025, 1028, 1056, 1059
Sau3AI	GATC	3 cut(s)	74, 205, 797
Sau96I	GGNCC	5 cut(s)	112, 184, 560, 995, 1016
ScaI	AGTACT	1 cut(s)	651
ScrFI	CCNGG	4 cut(s)	83, 84, 547, 999
SfaNI	GCATC	6 cut(s)	253, 418, 461, 472, 551, 1093
SgrAI	CRCCGGYG	1 cut(s)	491
SinI	GGWCC	3 cut(s)	112, 995, 1016
SmaI	CCCGGG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	1238
SmlI	CTYRAG	4 cut(s)	346, 733, 790, 1098
SmoI	CTYRAG	4 cut(s)	346, 733, 790, 1098
SpeI	ACTAGT	1 cut(s)	1340
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	6 cut(s)	469, 642, 1225, 1244, 1412, 1424
SsiI	CCGC	3 cut(s)	69, 397, 972
SspMI	CTAG	4 cut(s)	413, 456, 807, 1341
StyD4I	CCNGG	4 cut(s)	81, 82, 545, 997
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	6 cut(s)	173, 1110, 1174, 1237, 1308, 1440
TaqI	TCGA	2 cut(s)	168, 1128
TasI	AATT	6 cut(s)	469, 642, 1225, 1244, 1412, 1424
TatI	WGTACW	1 cut(s)	649
TfiI	GAWTC	6 cut(s)	92, 101, 212, 295, 712, 1043
Tru1I	TTAA	4 cut(s)	252, 402, 734, 927
Tru9I	TTAA	4 cut(s)	252, 402, 734, 927
TseFI	GTSAC	3 cut(s)	10, 583, 1141
TseI	GCWGC	6 cut(s)	617, 628, 1024, 1027, 1055, 1058
Tsp45I	GTSAC	3 cut(s)	10, 583, 1141
TspDTI	ATGAA	6 cut(s)	540, 677, 971, 1175, 1256, 1437
TspMI	CCCGGG	1 cut(s)	82
Vha464I	CTTAAG	1 cut(s)	733
VpaK11BI	GGWCC	3 cut(s)	112, 995, 1016
XagI	CCTNNNNNAGG	1 cut(s)	701
XapI	RAATTY	1 cut(s)	1412
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	2 cut(s)	284, 489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XmaI	CCCGGG	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	1037
XspI	CTAG	4 cut(s)	413, 456, 807, 1341
ZrmI	AGTACT	1 cut(s)	651
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.