Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009691

Physical Location & Seq

Genomic Coordinates Reverse (-)

66587875 .. 66591060

Gene Structure 3186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG451500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCTTCTGTGATGATGTTTGATCTTGAAAAGGGTGAAGATTTCTCAGAAAGCGGAGGATCCGACCCGGGATACGATTCCGATGATTCGGTTGAGGACCCGAGTTACAGCACTCTTGAAGAAACCCATGCCCACTTCTCAAACCTCTCCATCAACAGTAAATCCAAGGCCCGTATGGTGGAGGTTCTTGATCTTGAATATGGGGAGGAGGTGGTTGTGCCTGAGCTTAATCAGAATGATGCTAAAAGCTATGAACATGTCCAAAAGATGATTCAAGACGAACAGATTGGTAAACTGAAAGTGGAGCAATGTAAGCTCTACTTGAGGAAAAATGGGTTGAGACTGACTGGCAATAAGGACACGCTCATTCAGCGGATTAAGGAGCATCTAGAGATTTTGAATGGTGGAGGTGAGAAGAAGTACCCTGCATCTAGCTTTGTTTTGAATTGCAAAGGTGATGCATGCACCGGCGATGTTGTCATGTTTGAACAAAATGTTTATGAAATGTTTGACATAGCATCCAGGAGTGGAAGAGGCCCTCCATGTGGCACAAGGATTGTCGCAGGCCGGATTGTGAAAGAAAGCTATGGTGCTGCCAAACAGCAGCACACATTTACAATTGAAGTACTCTGGAGCAAGGGGGTGAAACCACTCCCTCCACTTCATCCCCTCCTAATCAAGGGTCGGAATCTTTACCGGTTGAAAACCTTAAGACAGAGGTGGGAAGATGAAGGGGAAAGGCAGAAAGCTTTGATGGAAAAGCACTCAAGGGGATCTCTTGCTAGGTCTGACAGAGAAGCACGGGTACAAAAGAAGGAAATGAGAGAAACTCTGAAGACAAATAGGTATTGGATACGATTGCAAGTTACACTAGTTTTTTTACATCTATCAGTTCTGTTAATTTTCCTAGTATCCTTCTGTTATCCTTGTCGTCATTACAAGCTTAAGTTCTCTGTTCAGGATTTCAAGAAAGGAGCAAAAAAACAATCAGTCTCAGTTGAACTCAGCCTCTACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP zf-CCCH

Protein Analysis

339

Amino Acids

38.83

Weight (kDa)

8.81

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	96 - 131	9.7e-10	SAP domain
DUF7699	PF24766	155 - 241	4.6e-43	Domain of unknown function (DUF7699)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25690 FvH4_6g35210
malus_domestica	MD09G1177700.v1.1
prunus_persica	Prupe.3G037000_v2.0.a1
pyrus_communis	pycom09g09610
rosa_chinensis	RchiOBHm_Chr2g0146551
rosa_laevigata	RLG00000003520 RLG00000015540 RLG00000020205
rosa_multiflora	Rmu_sc0000654.1_g000028 Rmu_sc0001986.1_g000025 Rmu_sc0005157.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100050 Rroxscaffold_7G00217240
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451500 Rh2BG464300 Rh2CG438400 Rh2DG473300 Rh2DG658700 Rh6CG004000
rosa_wichuraiana	Rw2G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	54, 373
AclWI	GGATC	3 cut(s)	54, 67, 781
AcuI	CTGAAG	1 cut(s)	854
AfaI	GTAC	3 cut(s)	422, 627, 807
AfiI	CCNNNNNNNGG	3 cut(s)	178, 545, 679
AflII	CTTAAG	2 cut(s)	709, 944
AflIII	ACRYGT	1 cut(s)	256
AgeI	ACCGGT	1 cut(s)	696
AhlI	ACTAGT	1 cut(s)	871
AjnI	CCWGG	1 cut(s)	521
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AluBI	AGCT	7 cut(s)	226, 249, 316, 435, 585, 749, 943
AluI	AGCT	7 cut(s)	226, 249, 316, 435, 585, 749, 943
Alw26I	GTCTC	2 cut(s)	334, 997
AlwI	GGATC	3 cut(s)	54, 67, 781
Ama87I	CYCGRG	2 cut(s)	67, 100
AoxI	GGCC	3 cut(s)	168, 535, 565
ApeKI	GCWGC	2 cut(s)	593, 604
AsiGI	ACCGGT	1 cut(s)	696
AspS9I	GGNCC	3 cut(s)	97, 169, 536
AsuC2I	CCSGG	2 cut(s)	68, 69
AsuHPI	GGTGA	4 cut(s)	47, 422, 467, 655
AvaI	CYCGRG	2 cut(s)	67, 100
AvaII	GGWCC	1 cut(s)	97
BamHI	GGATCC	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	1 cut(s)	842
BbvI	GCAGC	2 cut(s)	580, 616
BccI	CCATC	2 cut(s)	158, 748
BciT130I	CCWGG	1 cut(s)	523
BciVI	GTATCC	3 cut(s)	65, 846, 922
BcnI	CCSGG	2 cut(s)	68, 69
BcoDI	GTCTC	2 cut(s)	334, 997
BcuI	ACTAGT	1 cut(s)	871
BfaI	CTAG	5 cut(s)	389, 432, 783, 872, 908
BfrI	CTTAAG	2 cut(s)	709, 944
BfuI	GTATCC	3 cut(s)	65, 846, 922
BisI	GCNGC	2 cut(s)	594, 605
BlsI	GCNGC	2 cut(s)	595, 606
BmcAI	AGTACT	1 cut(s)	627
Bme1390I	CCNGG	3 cut(s)	68, 69, 523
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	2 cut(s)	67, 100
BmgT120I	GGNCC	3 cut(s)	97, 169, 536
BmiI	GGNNCC	2 cut(s)	61, 99
BmrFI	CCNGG	3 cut(s)	68, 69, 523
BmsI	GCATC	5 cut(s)	229, 394, 437, 448, 527
BpiI	GAAGAC	1 cut(s)	842
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpmI	CTGGAG	1 cut(s)	652
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	343, 751
BpuMI	CCSGG	2 cut(s)	68, 69
BsaJI	CCNNGG	2 cut(s)	67, 165
BsaWI	WCCGGW	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 545, 679
Bse118I	RCCGGY	2 cut(s)	467, 696
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	523
BseDI	CCNNGG	2 cut(s)	67, 165
BseGI	GGATG	2 cut(s)	518, 664
BseLI	CCNNNNNNNGG	3 cut(s)	178, 545, 679
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	4 cut(s)	60, 213, 1008, 1018
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	580, 616
BshFI	GGCC	3 cut(s)	170, 537, 567
BshTI	ACCGGT	1 cut(s)	696
BsiHKCI	CYCGRG	2 cut(s)	67, 100
BsiSI	CCGG	4 cut(s)	68, 468, 568, 697
BslI	CCNNNNNNNGG	3 cut(s)	178, 545, 679
BsmAI	GTCTC	2 cut(s)	334, 997
BsnI	GGCC	3 cut(s)	170, 537, 567
BsoBI	CYCGRG	2 cut(s)	67, 100
Bsp143I	GATC	4 cut(s)	22, 59, 190, 773
BspACI	CCGC	2 cut(s)	54, 373
BspANI	GGCC	3 cut(s)	170, 537, 567
BspCNI	CTCAG	4 cut(s)	59, 214, 1007, 1017
BspLI	GGNNCC	2 cut(s)	61, 99
BspPI	GGATC	3 cut(s)	54, 67, 781
BspTI	CTTAAG	2 cut(s)	709, 944
BsrDI	GCAATG	1 cut(s)	314
BsrFI	RCCGGY	2 cut(s)	467, 696
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	2 cut(s)	467, 696
BssECI	CCNNGG	2 cut(s)	67, 165
BssMI	GATC	4 cut(s)	22, 59, 190, 773
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	526
BstAFI	CTTAAG	2 cut(s)	709, 944
BstC8I	GCNNGC	2 cut(s)	463, 565
BstDEI	CTNAG	4 cut(s)	46, 222, 994, 1004
BstENI	CCTNNNNNAGG	1 cut(s)	677
BstF5I	GGATG	2 cut(s)	518, 664
BstKTI	GATC	4 cut(s)	25, 62, 193, 776
BstMAI	GTCTC	2 cut(s)	334, 997
BstMBI	GATC	4 cut(s)	22, 59, 190, 773
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 370
BstNI	CCWGG	1 cut(s)	523
BstNSI	RCATGY	2 cut(s)	260, 465
BstSCI	CCNGG	3 cut(s)	66, 67, 521
BstV1I	GCAGC	2 cut(s)	580, 616
BstV2I	GAAGAC	1 cut(s)	842
BstX2I	RGATCY	2 cut(s)	59, 773
BstYI	RGATCY	2 cut(s)	59, 773
BsuI	GTATCC	3 cut(s)	65, 846, 922
BsuRI	GGCC	3 cut(s)	170, 537, 567
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	518, 664
Cac8I	GCNNGC	2 cut(s)	463, 565
Cfr10I	RCCGGY	2 cut(s)	467, 696
Cfr13I	GGNCC	3 cut(s)	97, 169, 536
Cfr9I	CCCGGG	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	421, 626, 806
CspAI	ACCGGT	1 cut(s)	696
CviAII	CATG	5 cut(s)	128, 257, 462, 481, 543
CviQI	GTAC	3 cut(s)	421, 626, 806
DdeI	CTNAG	4 cut(s)	46, 222, 994, 1004
DpnI	GATC	4 cut(s)	24, 61, 192, 775
DpnII	GATC	4 cut(s)	22, 59, 190, 773
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	854
Eco88I	CYCGRG	2 cut(s)	67, 100
EcoNI	CCTNNNNNAGG	1 cut(s)	677
EcoO109I	RGGNCCY	2 cut(s)	97, 536
EcoRII	CCWGG	1 cut(s)	521
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	131, 260, 465, 484, 546
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FatI	CATG	5 cut(s)	127, 256, 461, 480, 542
Fnu4HI	GCNGC	2 cut(s)	594, 605
FokI	GGATG	2 cut(s)	505, 651
Fsp4HI	GCNGC	2 cut(s)	594, 605
FspBI	CTAG	5 cut(s)	389, 432, 783, 872, 908
GluI	GCNGC	2 cut(s)	594, 605
GsuI	CTGGAG	1 cut(s)	652
HaeIII	GGCC	3 cut(s)	170, 537, 567
HapII	CCGG	4 cut(s)	68, 468, 568, 697
Hin1II	CATG	5 cut(s)	131, 260, 465, 484, 546
HindIII	AAGCTT	2 cut(s)	747, 941
HinfI	GANTC	4 cut(s)	77, 86, 271, 688
HpaII	CCGG	4 cut(s)	68, 468, 568, 697
HphI	GGTGA	4 cut(s)	47, 422, 467, 655
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	7 cut(s)	49, 64, 82, 234, 687, 790, 834
Hpy188III	TCNNGA	9 cut(s)	26, 116, 188, 194, 275, 389, 631, 959, 967
Hpy8I	GTNNAC	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	725, 808, 925
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	5 cut(s)	428, 450, 461, 465, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 370
HpyF3I	CTNAG	4 cut(s)	46, 222, 994, 1004
Hsp92II	CATG	5 cut(s)	131, 260, 465, 484, 546
Kzo9I	GATC	4 cut(s)	22, 59, 190, 773
LmnI	GCTCC	4 cut(s)	304, 382, 633, 974
Lsp1109I	GCAGC	2 cut(s)	580, 616
LweI	GCATC	5 cut(s)	229, 394, 437, 448, 527
MaeI	CTAG	5 cut(s)	389, 432, 783, 872, 908
MaeIII	GTNAC	2 cut(s)	104, 865
MalI	GATC	4 cut(s)	24, 61, 192, 775
MboI	GATC	4 cut(s)	22, 59, 190, 773
MboII	GAAGA	6 cut(s)	50, 131, 427, 543, 737, 847
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	2 cut(s)	59, 773
MluCI	AATT	3 cut(s)	445, 618, 900
MmeI	TCCRAC	2 cut(s)	87, 665
Mph1103I	ATGCAT	1 cut(s)	463
MseI	TTAA	6 cut(s)	228, 378, 710, 899, 945, 1018
MspA1I	CMGCKG	1 cut(s)	373
MspCI	CTTAAG	2 cut(s)	709, 944
MspI	CCGG	4 cut(s)	68, 468, 568, 697
MspR9I	CCNGG	3 cut(s)	68, 69, 523
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	2 cut(s)	313, 370
NciI	CCSGG	2 cut(s)	68, 69
NdeII	GATC	4 cut(s)	22, 59, 190, 773
NlaIII	CATG	5 cut(s)	131, 260, 465, 484, 546
NlaIV	GGNNCC	2 cut(s)	61, 99
NsiI	ATGCAT	1 cut(s)	463
NspI	RCATGY	2 cut(s)	260, 465
PaeI	GCATGC	1 cut(s)	465
PciI	ACATGT	1 cut(s)	256
PfeI	GAWTC	4 cut(s)	77, 86, 271, 688
PfoI	TCCNGGA	1 cut(s)	521
PinAI	ACCGGT	1 cut(s)	696
PkrI	GCNGC	2 cut(s)	595, 606
PpuMI	RGGWCCY	1 cut(s)	97
PscI	ACATGT	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	61, 99
PspPI	GGNCC	3 cut(s)	97, 169, 536
PspPPI	RGGWCCY	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	59, 773
RsaI	GTAC	3 cut(s)	422, 627, 807
RsaNI	GTAC	3 cut(s)	421, 626, 806
SaqAI	TTAA	6 cut(s)	228, 378, 710, 899, 945, 1018
SatI	GCNGC	2 cut(s)	594, 605
Sau3AI	GATC	4 cut(s)	22, 59, 190, 773
Sau96I	GGNCC	3 cut(s)	97, 169, 536
ScaI	AGTACT	1 cut(s)	627
ScrFI	CCNGG	3 cut(s)	68, 69, 523
SfaNI	GCATC	5 cut(s)	229, 394, 437, 448, 527
SgrAI	CRCCGGYG	1 cut(s)	467
SinI	GGWCC	1 cut(s)	97
SmaI	CCCGGG	1 cut(s)	69
SmlI	CTYRAG	4 cut(s)	322, 709, 766, 944
SmoI	CTYRAG	4 cut(s)	322, 709, 766, 944
SpeI	ACTAGT	1 cut(s)	871
SphI	GCATGC	1 cut(s)	465
Sse9I	AATT	3 cut(s)	445, 618, 900
SsiI	CCGC	2 cut(s)	54, 373
SspMI	CTAG	5 cut(s)	389, 432, 783, 872, 908
StyD4I	CCNGG	3 cut(s)	66, 67, 521
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	158
TasI	AATT	3 cut(s)	445, 618, 900
TatI	WGTACW	1 cut(s)	625
TfiI	GAWTC	4 cut(s)	77, 86, 271, 688
Tru1I	TTAA	6 cut(s)	228, 378, 710, 899, 945, 1018
Tru9I	TTAA	6 cut(s)	228, 378, 710, 899, 945, 1018
TseI	GCWGC	2 cut(s)	593, 604
TspDTI	ATGAA	4 cut(s)	267, 516, 653, 744
TspMI	CCCGGG	1 cut(s)	67
Vha464I	CTTAAG	2 cut(s)	709, 944
VpaK11BI	GGWCC	1 cut(s)	97
XagI	CCTNNNNNAGG	1 cut(s)	677
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	2 cut(s)	260, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmaI	CCCGGG	1 cut(s)	67
XspI	CTAG	5 cut(s)	389, 432, 783, 872, 908
ZrmI	AGTACT	1 cut(s)	627
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.