Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009691

Physical Location & Seq

Genomic Coordinates Forward (+)

2663917 .. 2667533

Gene Structure 3617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G037000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCTACCTCTGAACAATCTAAATATCATCAATATGAAGATAAAGATGGAGATTTCTTGGAAAACGGAGAGTCCGACCCGGAATATGATTCGGATGATTCGATCAAGGACCCGAGTTATAGCAGTACTCTTGAAGAAACCCATGCCAACTTCGCAAAGCTCTCAATCAAGCGTAATTCAAAGACTCGTATTGCCACAGATATCGATCTTGGTAGTGAAGCGGACCTTGATGGGCAGGAGGTGGTTTTACCTGAGCTGGACCAGAAAGATGAGAAAAGCTTTGAAATGGTCCAAAAGATTATTGAAGCTAGACAAATTGAGAAATTGAAAGTGGAGCAATGTAAGCTGTACCTGAGGAAGAATGGGTTGAGATTGACTGGCAATAAAGACACGCTCATTCAGCGGATTAAGGAGCATTTAGAGATTTTGAATGGTGGAGGTGAGAAGAAGTATCCAGCATCTAGCTTTGTTTTGAATTGTAAAGGGGATGCATGCACTAGCGATGTTGTCATGTTTGAACAAAATGTTTATGAAATATTTGACATAGCTTCTAGGAGTGGAAGAGGCCCTCCATGTGGCACAAGGATTGTTGCAGGCCGAATTGTTAAAGAAAGCTATGGCGCTGCTAAACAGCAGCACACATTTACAATTGAGGTACTCTGGAGCAAGGGGAAGAAACCACTCCCTCCGCTTCATCCCCTTCTAATTAAGGGTCGGAACCTTTACAGGTTGAAAACTTTGAGACAGAGATGGGAAGATGAAGGGGAGAGGCAGAAAGTTTTGATGGAAAAGCACTCAAGAGGATCTCTTGCTAGGACTGCTAAAGAAGCACGGGTCCAAGAGAAGGACATGAGAAAAATGCTGAGAGAAATAGGGTTTCAAGAAAGGAGGAACCGAAAAAGAACCAGTCTCAGTTTAACTCAACCTCGGTGCTTAAAACATCAGTTCAACCTCAGCAATCTGTTTCACTTGTTAACTCAGCAAACCTACATCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP zf-CCCH

Protein Analysis

333

Amino Acids

38.25

Weight (kDa)

8.97

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009691)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g25690 FvH4_6g35210
malus_domestica	MD09G1177700.v1.1
prunus_persica	Prupe.3G037000_v2.0.a1
pyrus_communis	pycom09g09610
rosa_chinensis	RchiOBHm_Chr2g0146551
rosa_laevigata	RLG00000003520 RLG00000015540 RLG00000020205
rosa_multiflora	Rmu_sc0000654.1_g000028 Rmu_sc0001986.1_g000025 Rmu_sc0005157.1_g000002
rosa_roxburghii	Rroxscaffold_2G00100050 Rroxscaffold_7G00217240
rosa_rugosa	Rorug02G0394700
rosa_samantha	Rh2AG451500 Rh2BG464300 Rh2CG438400 Rh2DG473300 Rh2DG658700 Rh6CG004000
rosa_wichuraiana	Rw2G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	221, 403, 689
AclWI	GGATC	1 cut(s)	811
AfaI	GTAC	3 cut(s)	127, 350, 657
AfiI	CCNNNNNNNGG	2 cut(s)	575, 844
AluBI	AGCT	8 cut(s)	160, 256, 279, 308, 346, 465, 548, 615
AluI	AGCT	8 cut(s)	160, 256, 279, 308, 346, 465, 548, 615
Alw26I	GTCTC	2 cut(s)	736, 914
AlwI	GGATC	1 cut(s)	811
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	565, 595
ApeKI	GCWGC	2 cut(s)	623, 634
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	6 cut(s)	109, 223, 259, 289, 566, 835
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	452
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	5 cut(s)	109, 223, 259, 289, 835
AxyI	CCTNAGG	1 cut(s)	353
BbvCI	CCTCAGC	1 cut(s)	953
BbvI	GCAGC	2 cut(s)	610, 646
BccI	CCATC	4 cut(s)	41, 224, 744, 778
BciVI	GTATCC	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	736, 914
BfaI	CTAG	6 cut(s)	309, 462, 498, 552, 813, 997
BfoI	RGCGCY	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	462
BisI	GCNGC	2 cut(s)	624, 635
BlsI	GCNGC	2 cut(s)	625, 636
BmcAI	AGTACT	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	5 cut(s)	109, 223, 259, 289, 835
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	6 cut(s)	109, 223, 259, 289, 566, 835
BmiI	GGNNCC	4 cut(s)	111, 719, 836, 893
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	467, 478
BpmI	CTGGAG	1 cut(s)	682
Bpu10I	CCTNAGC	2 cut(s)	252, 953
BpuEI	CTTGAG	1 cut(s)	781
BpuMI	CCSGG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	204
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	926
Bsc4I	CCNNNNNNNGG	2 cut(s)	575, 844
Bse1I	ACTGG	2 cut(s)	382, 906
Bse21I	CCTNAGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	204
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	926
BseGI	GGATG	3 cut(s)	100, 493, 694
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	575, 844
BseMI	GCAATG	1 cut(s)	344
BseMII	CTCAG	6 cut(s)	243, 344, 854, 925, 967, 992
BseNI	ACTGG	2 cut(s)	382, 906
BseXI	GCAGC	2 cut(s)	610, 646
BshFI	GGCC	2 cut(s)	567, 597
BshVI	ATCGAT	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	575, 844
BsmAI	GTCTC	2 cut(s)	736, 914
BsnI	GGCC	2 cut(s)	567, 597
BsoBI	CYCGRG	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	102, 205, 803
BspACI	CCGC	3 cut(s)	221, 403, 689
BspANI	GGCC	2 cut(s)	567, 597
BspCNI	CTCAG	6 cut(s)	244, 345, 855, 924, 966, 991
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	4 cut(s)	111, 719, 836, 893
BspPI	GGATC	1 cut(s)	811
BsrDI	GCAATG	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	382, 906
BssECI	CCNNGG	1 cut(s)	926
BssMI	GATC	3 cut(s)	102, 205, 803
Bst6I	CTCTTC	1 cut(s)	556
BstC8I	GCNNGC	2 cut(s)	493, 595
BstDEI	CTNAG	6 cut(s)	252, 353, 863, 911, 953, 978
BstF5I	GGATG	3 cut(s)	100, 493, 694
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	3 cut(s)	105, 208, 806
BstMAI	GTCTC	2 cut(s)	736, 914
BstMBI	GATC	3 cut(s)	102, 205, 803
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 343, 400, 818, 827
BstNSI	RCATGY	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	610, 646
BstX2I	RGATCY	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	803
Bsu15I	ATCGAT	1 cut(s)	204
Bsu36I	CCTNAGG	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	567, 597
BsuTUI	ATCGAT	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	100, 493, 694
Cac8I	GCNNGC	2 cut(s)	493, 595
CfoI	GCGC	1 cut(s)	623
Cfr13I	GGNCC	6 cut(s)	109, 223, 259, 289, 566, 835
ClaI	ATCGAT	1 cut(s)	204
Csp6I	GTAC	3 cut(s)	126, 349, 656
CviAII	CATG	5 cut(s)	143, 492, 511, 573, 850
CviQI	GTAC	3 cut(s)	126, 349, 656
DdeI	CTNAG	6 cut(s)	252, 353, 863, 911, 953, 978
DpnI	GATC	3 cut(s)	104, 207, 805
DpnII	GATC	3 cut(s)	102, 205, 803
Eam1104I	CTCTTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	5 cut(s)	109, 223, 259, 289, 835
Eco81I	CCTNAGG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	112
EcoO109I	RGGNCCY	2 cut(s)	109, 566
EcoRV	GATATC	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	493
FaeI	CATG	5 cut(s)	146, 495, 514, 576, 853
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	5 cut(s)	142, 491, 510, 572, 849
Fnu4HI	GCNGC	2 cut(s)	624, 635
FokI	GGATG	3 cut(s)	107, 500, 681
Fsp4HI	GCNGC	2 cut(s)	624, 635
FspBI	CTAG	6 cut(s)	309, 462, 498, 552, 813, 997
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	2 cut(s)	624, 635
GsuI	CTGGAG	1 cut(s)	682
HaeII	RGCGCY	1 cut(s)	624
HaeIII	GGCC	2 cut(s)	567, 597
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	623
Hin1II	CATG	5 cut(s)	146, 495, 514, 576, 853
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	4 cut(s)	71, 89, 98, 184
HpaI	GTTAAC	1 cut(s)	975
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	1 cut(s)	975
Hpy188I	TCNGA	4 cut(s)	13, 76, 94, 717
Hpy188III	TCNNGA	4 cut(s)	131, 661, 798, 881
Hpy8I	GTNNAC	1 cut(s)	975
HpyAV	CCTTC	3 cut(s)	710, 755, 838
HpyCH4V	TGCA	3 cut(s)	491, 495, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 343, 400, 818, 827
HpyF3I	CTNAG	6 cut(s)	252, 353, 863, 911, 953, 978
Hsp92II	CATG	5 cut(s)	146, 495, 514, 576, 853
HspAI	GCGC	1 cut(s)	621
KspAI	GTTAAC	1 cut(s)	975
Kzo9I	GATC	3 cut(s)	102, 205, 803
LmnI	GCTCC	3 cut(s)	334, 412, 663
Lsp1109I	GCAGC	2 cut(s)	610, 646
LweI	GCATC	2 cut(s)	467, 478
MaeI	CTAG	6 cut(s)	309, 462, 498, 552, 813, 997
MalI	GATC	3 cut(s)	104, 207, 805
MboI	GATC	3 cut(s)	102, 205, 803
MboII	GAAGA	7 cut(s)	50, 146, 370, 457, 573, 685, 767
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	803
MluCI	AATT	7 cut(s)	175, 315, 323, 475, 600, 648, 705
MlyI	GAGTC	2 cut(s)	80, 178
MmeI	TCCRAC	2 cut(s)	99, 695
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	6 cut(s)	408, 606, 708, 917, 935, 974
MslI	CAYNNNNRTG	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	648
MwoI	GCNNNNNNNGC	5 cut(s)	152, 343, 400, 818, 827
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	3 cut(s)	102, 205, 803
NlaIII	CATG	5 cut(s)	146, 495, 514, 576, 853
NlaIV	GGNNCC	4 cut(s)	111, 719, 836, 893
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	495
PaeI	GCATGC	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 98
PfeI	GAWTC	2 cut(s)	89, 98
PkrI	GCNGC	2 cut(s)	625, 636
PleI	GAGTC	2 cut(s)	79, 178
PpsI	GAGTC	2 cut(s)	79, 178
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
PspN4I	GGNNCC	4 cut(s)	111, 719, 836, 893
PspPI	GGNCC	6 cut(s)	109, 223, 259, 289, 566, 835
PspPPI	RGGWCCY	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	803
RsaI	GTAC	3 cut(s)	127, 350, 657
RsaNI	GTAC	3 cut(s)	126, 349, 656
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	6 cut(s)	408, 606, 708, 917, 935, 974
SatI	GCNGC	2 cut(s)	624, 635
Sau3AI	GATC	3 cut(s)	102, 205, 803
Sau96I	GGNCC	6 cut(s)	109, 223, 259, 289, 566, 835
ScaI	AGTACT	1 cut(s)	127
SchI	GAGTC	2 cut(s)	80, 178
ScrFI	CCNGG	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	467, 478
SinI	GGWCC	5 cut(s)	109, 223, 259, 289, 835
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
SphI	GCATGC	1 cut(s)	495
Sse9I	AATT	7 cut(s)	175, 315, 323, 475, 600, 648, 705
SsiI	CCGC	3 cut(s)	221, 403, 689
SspI	AATATT	1 cut(s)	537
SspMI	CTAG	6 cut(s)	309, 462, 498, 552, 813, 997
StyD4I	CCNGG	1 cut(s)	78
TaqI	TCGA	2 cut(s)	101, 204
TasI	AATT	7 cut(s)	175, 315, 323, 475, 600, 648, 705
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	89, 98
Tru1I	TTAA	6 cut(s)	408, 606, 708, 917, 935, 974
Tru9I	TTAA	6 cut(s)	408, 606, 708, 917, 935, 974
TseI	GCWGC	2 cut(s)	623, 634
TspDTI	ATGAA	4 cut(s)	51, 546, 683, 774
TspGWI	ACGGA	1 cut(s)	81
VpaK11BI	GGWCC	5 cut(s)	109, 223, 259, 289, 835
XceI	RCATGY	1 cut(s)	495
XspI	CTAG	6 cut(s)	309, 462, 498, 552, 813, 997
ZrmI	AGTACT	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.