Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Forward (+)

29540282 .. 29545958

Gene Structure 5677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGGAGCCATAGACGAAAAGGTAGACCTTGAATCAGATGAGGAGATCCCATTTAGCTCATCATCAGCTACAAATAAAGTAGATTCCTTGAATTTTGAGATGGTTCATTTGCCTTCACGGCCAGTTATGGCAAACTCATGGATTGCAAGACATATAGGGATAAGAGCCGTGAGGAGTATTTATATTGTCTTATTAAAAGCAAAGATCAACATCTTGCTACCGTTTGGTCCGCTGGCGATTCTGCTACATTACTTTACTGGAAAGCATGGATGGGTCTTTTTCTTCAGCTTATTGGGCATCATACCTTTGGCAGAGCGTCTAGGATATGCGACTGAGCAACTCGCTTTCTACACAGGGCCAACAGTTGGGGGACTTTTAAATGCCACATTCGGAAACGCAACAGAAATGATTATATCGATTTATGCATTGAAGAATGGAATGATCAGGGTTGTTCAACAATCGTTGTTGGGGTCAATCTTGTCAAACATGCTCTTAGTTCTGGGTTGTGCCTTCTTCTGTGGTGGGATCATTCATTACAATAAAGTCCAGGAGTTCAACAAGTCGGCTGCCGTTGTGAATTCTGGATTGTTGTTGATGGCTGTGATGGGGATACTTTTTCCAGCTGTCCTTCATTTTACACACACAGAGGTGCATTTTGGGAAGTCAGAGCTGGCTCTTTCAAGATTTAGTAGCTGCATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTCCAACTTAGAAGTCATCGTAGTCTTTATAACCCTATTGATGAGGAAGGAGACAACAATGAAGATTGTGATGAGGATGAGGTTCCTGAGATAACACACTGGGAAGCAATTGGGTGGCTTTCTGTTTTAACTGTGTGGGTGTCCATTTTGTCTGGATACCTTGTTGATGCCATCCAGGGAGCATCAGACTCTTTCAACATTCCTGTGGCATTCATCAGTGTCATTTTGCTCCCTATTGTAGGGAACGCTGCGGAGCATGCAAGTGCAATCATGTTTGCCATGAAAGATAAGCTTGACATTACACTTGGAGTTGCGATTGGATCATCGACACAAATATCCATGTTTGTGATTCCCTTCTGTGTGGTGGTTGGGTGGATCATGGGAGAGCCAATGGACTTGAATTTTCAACTCTTTGAGACTGCTACACTCTTTATCACCGTGCTTGTAGTGGCATTTATGTTGCAGGAAGGGACGTCGAACTACTTCAAAGGATTGATGCTCATCCTGTGTTATCTCATAGTTGCAGCCAGTTTTTTTGTACATGTAGATCCTTCAAATGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

432

Amino Acids

47.41

Weight (kDa)

4.98

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	91 - 246	2.4e-23	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	280 - 421	1.1e-23	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AatII	GACGTC	1 cut(s)	1205
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	2 cut(s)	230, 980
AclWI	GGATC	5 cut(s)	40, 533, 1057, 1112, 1271
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	3 cut(s)	91, 577, 1129
AcuI	CTGAAG	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	1202
AfaI	GTAC	1 cut(s)	1269
AfiI	CCNNNNNNNGG	2 cut(s)	365, 968
AflIII	ACRYGT	1 cut(s)	1270
AjnI	CCWGG	2 cut(s)	546, 903
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	8 cut(s)	57, 68, 288, 623, 670, 693, 720, 1021
AluI	AGCT	8 cut(s)	57, 68, 288, 623, 670, 693, 720, 1021
Alw26I	GTCTC	2 cut(s)	774, 1139
AlwI	GGATC	5 cut(s)	40, 533, 1057, 1112, 1271
AoxI	GGCC	2 cut(s)	119, 356
ApeKI	GCWGC	4 cut(s)	566, 693, 977, 1253
ApoI	RAATTY	3 cut(s)	91, 577, 1129
Asp700I	GAANNNNTTC	1 cut(s)	1211
AspS9I	GGNCC	2 cut(s)	227, 356
AsuHPI	GGTGA	1 cut(s)	1156
AvaII	GGWCC	1 cut(s)	227
BbvI	GCAGC	4 cut(s)	553, 680, 964, 1265
BccI	CCATC	5 cut(s)	94, 264, 589, 598, 908
BceAI	ACGGC	3 cut(s)	134, 152, 554
BciT130I	CCWGG	2 cut(s)	548, 905
BciVI	GTATCC	2 cut(s)	603, 878
BclI	TGATCA	1 cut(s)	441
BcoDI	GTCTC	2 cut(s)	774, 1139
BfaI	CTAG	2 cut(s)	320, 704
BfuI	GTATCC	2 cut(s)	603, 878
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	4 cut(s)	567, 694, 978, 1254
BlsI	GCNGC	4 cut(s)	568, 695, 979, 1255
Bme1390I	CCNGG	2 cut(s)	548, 905
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	227, 356
BmiI	GGNNCC	2 cut(s)	7, 813
BmrFI	CCNGG	2 cut(s)	548, 905
BmrI	ACTGGG	1 cut(s)	838
BmsI	GCATC	4 cut(s)	306, 886, 920, 1215
BmuI	ACTGGG	1 cut(s)	838
Bsa29I	ATCGAT	1 cut(s)	416
BsaBI	GATNNNNATC	2 cut(s)	209, 1229
BsaHI	GRCGYC	1 cut(s)	1202
BsaJI	CCNNGG	1 cut(s)	904
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 968
Bse1I	ACTGG	4 cut(s)	122, 262, 833, 1257
Bse8I	GATNNNNATC	2 cut(s)	209, 1229
BseBI	CCWGG	2 cut(s)	548, 905
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	904
BseGI	GGATG	4 cut(s)	275, 811, 900, 1230
BseJI	GATNNNNATC	2 cut(s)	209, 1229
BseLI	CCNNNNNNNGG	2 cut(s)	365, 968
BseMII	CTCAG	2 cut(s)	324, 807
BseNI	ACTGG	4 cut(s)	122, 262, 833, 1257
BseRI	GAGGAG	2 cut(s)	56, 187
BseXI	GCAGC	4 cut(s)	553, 680, 964, 1265
BshFI	GGCC	2 cut(s)	121, 358
BshVI	ATCGAT	1 cut(s)	416
BslFI	GGGAC	2 cut(s)	384, 1213
BslI	CCNNNNNNNGG	2 cut(s)	365, 968
BsmAI	GTCTC	2 cut(s)	774, 1139
BsmFI	GGGAC	2 cut(s)	384, 1213
BsmI	GAATGC	1 cut(s)	938
BsnI	GGCC	2 cut(s)	121, 358
Bsp1407I	TGTACA	1 cut(s)	1267
Bsp143I	GATC	7 cut(s)	45, 204, 441, 525, 1049, 1104, 1276
BspACI	CCGC	2 cut(s)	230, 980
BspANI	GGCC	2 cut(s)	121, 358
BspCNI	CTCAG	2 cut(s)	325, 808
BspDI	ATCGAT	1 cut(s)	416
BspLI	GGNNCC	2 cut(s)	7, 813
BspPI	GGATC	5 cut(s)	40, 533, 1057, 1112, 1271
BsrGI	TGTACA	1 cut(s)	1267
BsrI	ACTGG	4 cut(s)	122, 262, 833, 1257
BssECI	CCNNGG	1 cut(s)	904
BssMI	GATC	7 cut(s)	45, 204, 441, 525, 1049, 1104, 1276
BssNI	GRCGYC	1 cut(s)	1202
Bst2UI	CCWGG	2 cut(s)	548, 905
Bst4CI	ACNGT	4 cut(s)	222, 364, 862, 1168
BstACI	GRCGYC	1 cut(s)	1202
BstAUI	TGTACA	1 cut(s)	1267
BstC8I	GCNNGC	4 cut(s)	234, 672, 718, 987
BstDEI	CTNAG	4 cut(s)	333, 493, 737, 816
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstF5I	GGATG	4 cut(s)	275, 811, 900, 1230
BstKTI	GATC	7 cut(s)	48, 207, 444, 528, 1052, 1107, 1279
BstMAI	GTCTC	2 cut(s)	774, 1139
BstMBI	GATC	7 cut(s)	45, 204, 441, 525, 1049, 1104, 1276
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 294, 986
BstNI	CCWGG	2 cut(s)	548, 905
BstNSI	RCATGY	3 cut(s)	490, 989, 1274
BstSCI	CCNGG	2 cut(s)	546, 903
BstV1I	GCAGC	4 cut(s)	553, 680, 964, 1265
BstX2I	RGATCY	2 cut(s)	45, 1276
BstYI	RGATCY	2 cut(s)	45, 1276
Bsu15I	ATCGAT	1 cut(s)	416
BsuI	GTATCC	2 cut(s)	603, 878
BsuRI	GGCC	2 cut(s)	121, 358
BsuTUI	ATCGAT	1 cut(s)	416
BtsCI	GGATG	4 cut(s)	275, 811, 900, 1230
BtsIMutI	CAGTG	2 cut(s)	826, 952
Cac8I	GCNNGC	4 cut(s)	234, 672, 718, 987
Cfr13I	GGNCC	2 cut(s)	227, 356
ClaI	ATCGAT	1 cut(s)	416
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	1268
CviAII	CATG	9 cut(s)	138, 266, 487, 986, 1000, 1009, 1069, 1108, 1271
CviQI	GTAC	1 cut(s)	1268
DdeI	CTNAG	4 cut(s)	333, 493, 737, 816
DpnI	GATC	7 cut(s)	47, 206, 443, 527, 1051, 1106, 1278
DpnII	GATC	7 cut(s)	45, 204, 441, 525, 1049, 1104, 1276
DraI	TTTAAA	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	2 cut(s)	546, 903
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	9 cut(s)	141, 269, 490, 989, 1003, 1012, 1072, 1111, 1274
FalI	AAGNNNNNCTT	2 cut(s)	1005, 1037
FaqI	GGGAC	2 cut(s)	384, 1213
FatI	CATG	9 cut(s)	137, 265, 486, 985, 999, 1008, 1068, 1107, 1270
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	4 cut(s)	567, 694, 978, 1254
FokI	GGATG	4 cut(s)	282, 818, 887, 1217
Fsp4HI	GCNGC	4 cut(s)	567, 694, 978, 1254
FspBI	CTAG	2 cut(s)	320, 704
GluI	GCNGC	4 cut(s)	567, 694, 978, 1254
HaeIII	GGCC	2 cut(s)	121, 358
HgaI	GACGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	1202
Hin1II	CATG	9 cut(s)	141, 269, 490, 989, 1003, 1012, 1072, 1111, 1274
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	5 cut(s)	32, 83, 238, 917, 1078
HphI	GGTGA	1 cut(s)	1156
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	37, 392, 667, 916
Hpy188III	TCNNGA	4 cut(s)	582, 681, 815, 882
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	1207
HpyAV	CCTTC	7 cut(s)	123, 520, 638, 770, 1093, 1190, 1290
HpyCH4III	ACNGT	4 cut(s)	222, 364, 862, 1168
HpyCH4IV	ACGT	1 cut(s)	1202
HpyCH4V	TGCA	9 cut(s)	146, 425, 652, 696, 716, 989, 995, 1192, 1253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 294, 986
HpyF3I	CTNAG	4 cut(s)	333, 493, 737, 816
HpySE526I	ACGT	1 cut(s)	1202
Hsp92I	GRCGYC	1 cut(s)	1202
Hsp92II	CATG	9 cut(s)	141, 269, 490, 989, 1003, 1012, 1072, 1111, 1274
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	7 cut(s)	45, 204, 441, 525, 1049, 1104, 1276
LmnI	GCTCC	4 cut(s)	5, 908, 963, 982
Lsp1109I	GCAGC	4 cut(s)	553, 680, 964, 1265
LweI	GCATC	4 cut(s)	306, 886, 920, 1215
MaeI	CTAG	2 cut(s)	320, 704
MaeII	ACGT	1 cut(s)	1202
MalI	GATC	7 cut(s)	47, 206, 443, 527, 1051, 1106, 1278
MboI	GATC	7 cut(s)	45, 204, 441, 525, 1049, 1104, 1276
MboII	GAAGA	5 cut(s)	274, 442, 505, 721, 803
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	2 cut(s)	45, 1276
MluCI	AATT	4 cut(s)	91, 577, 837, 1129
MlyI	GAGTC	1 cut(s)	911
MmeI	TCCRAC	1 cut(s)	757
MnlI	CCTC	6 cut(s)	34, 165, 640, 766, 796, 802
Mph1103I	ATGCAT	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	1211
MseI	TTAA	3 cut(s)	194, 377, 857
MslI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
MspA1I	CMGCKG	2 cut(s)	232, 623
MspR9I	CCNGG	2 cut(s)	548, 905
MunI	CAATTG	1 cut(s)	837
Mva1269I	GAATGC	1 cut(s)	938
MvaI	CCWGG	2 cut(s)	548, 905
MwoI	GCNNNNNNNGC	3 cut(s)	118, 294, 986
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	7 cut(s)	45, 204, 441, 525, 1049, 1104, 1276
NlaIII	CATG	9 cut(s)	141, 269, 490, 989, 1003, 1012, 1072, 1111, 1274
NlaIV	GGNNCC	2 cut(s)	7, 813
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	3 cut(s)	490, 989, 1274
OliI	CACNNNNGTG	1 cut(s)	647
PaeI	GCATGC	1 cut(s)	989
PciI	ACATGT	1 cut(s)	1270
PctI	GAATGC	1 cut(s)	938
PdmI	GAANNNNTTC	1 cut(s)	1211
PfeI	GAWTC	4 cut(s)	32, 83, 238, 1078
PflMI	CCANNNNNTGG	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	4 cut(s)	568, 695, 979, 1255
PleI	GAGTC	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	911
PscI	ACATGT	1 cut(s)	1270
PsiI	TTATAA	1 cut(s)	759
Psp6I	CCWGG	2 cut(s)	546, 903
PspGI	CCWGG	2 cut(s)	546, 903
PspN4I	GGNNCC	2 cut(s)	7, 813
PspPI	GGNCC	2 cut(s)	227, 356
PsuI	RGATCY	2 cut(s)	45, 1276
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	1 cut(s)	1269
RsaNI	GTAC	1 cut(s)	1268
RseI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
SaqAI	TTAA	3 cut(s)	194, 377, 857
SatI	GCNGC	4 cut(s)	567, 694, 978, 1254
Sau3AI	GATC	7 cut(s)	45, 204, 441, 525, 1049, 1104, 1276
Sau96I	GGNCC	2 cut(s)	227, 356
SchI	GAGTC	1 cut(s)	911
ScrFI	CCNGG	2 cut(s)	548, 905
SfaNI	GCATC	4 cut(s)	306, 886, 920, 1215
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
SphI	GCATGC	1 cut(s)	989
Sse9I	AATT	4 cut(s)	91, 577, 837, 1129
SsiI	CCGC	2 cut(s)	230, 980
SspMI	CTAG	2 cut(s)	320, 704
StyD4I	CCNGG	2 cut(s)	546, 903
TaaI	ACNGT	4 cut(s)	222, 364, 862, 1168
TaiI	ACGT	1 cut(s)	1205
TaqI	TCGA	3 cut(s)	416, 1055, 1205
TasI	AATT	4 cut(s)	91, 577, 837, 1129
TatI	WGTACW	1 cut(s)	1267
TfiI	GAWTC	4 cut(s)	32, 83, 238, 1078
Tru1I	TTAA	3 cut(s)	194, 377, 857
Tru9I	TTAA	3 cut(s)	194, 377, 857
TscAI	CASTG	2 cut(s)	833, 952
TseI	GCWGC	4 cut(s)	566, 693, 977, 1253
TspDTI	ATGAA	6 cut(s)	95, 521, 620, 804, 931, 1025
TspRI	CASTG	2 cut(s)	833, 952
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	3 cut(s)	91, 577, 1129
XceI	RCATGY	3 cut(s)	490, 989, 1274
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	1211
XspI	CTAG	2 cut(s)	320, 704
ZraI	GACGTC	1 cut(s)	1203
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.