Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Reverse (-)

18441885 .. 18446013

Gene Structure 4129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGGAGCCATAGGAGAAAAGCTAGACCTTGAATCGGATGAGGAGATCCCATTTACCTCATCAGCAGCTACAAATAAAGTAGAGGCCTTGGATTTCGAGATGGTTCATTTGCCTTCCCGGCCAGTTATGGCAAACTCATGGATTGCAAGACATATAGGGATAAGAGCCGTGAGGAGTATTTATATTGTCTTATTAAAAGCAAAGATCAACATGTTGCTGCCATTTGGTCCACTGGCAATTCTACTACATTACGTTACTGGAAAGCATGGATGGGTCTTTTTCTTCAGCTTATTGGGCATCATACCTTTGGCAGAGCGTCTAGGATATGCGACTGAGCAACTCGCTTTCTACACAGGGCCAACAGTTGGGGGACTTTTAAATGCCACATTTGGAAATGCAACAGAAATGATCATATCAATTTATGCATTGAAGAATGGAATGATTAGGGTTGTTCAACAATCGTTGTTGGGGTCAATCTTGTCAAACATGCTCTTAGTTCTGGGTTGTGCCTTCTTCTCTGGTGGGATCGTTCATTACAATAAAGTTCAGGTGTTCAACAAGTCGGCTGCCGTCGTGAATTCTGGATTGTTGTTGATGGCTGTAATGGGGATAATGTTTCCAGCTGTGCTTCATTTTACACACACAGAGGTGCATTTTGGGAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCATCGTAGTCTTTATAACCCCATTAATGAGGAAGGAGACAATGATGAAGATTGTGATGAGGATGAGATTCCTGAGATAACTCACTGGGAAGCAATTGGCTGGCTTTCTGTTTTAACTGTGTGGGTGTCCATTTTATCTGGATACCTTGTCGATGCCATCCAGGGAGCATCAGACTCTTTCAACATTCCTGTGGCATTTATCAGTGTCATTTTGCTCCCTATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCATGAAAGATAAGCTTGACATTACACTTGGAGTTGCGATTGGATCATCAACACAAATATCCATGTTTGTGATTCCCTTCTGTGTGGTTGTTGGGTGGATCATGGGAGAGCAAATGGACTTGAATTTTCAACTCTTTGAGACTGCTACACTCTTTGTCACCGTGCTTGTAGTGGCATTCATGTTGCAGGAAGGGGACGTCAAACTACTTCAAAGGATTGATGCTTATCCTGTGTTATCTCATAGTTGCAGCCAGTTTTTTTTTGTACATGTAGATCCTTCAAATGACTGTGAACTGGACCTCACAATCAAAATAATCCTGATGCTAACTAAACTAACAGTTGGAGTGGCCGCCGTGTATTTGAAAATCAATGCAGTATCTGCACGCAAAGAAAATCCATATGATCTTCCAGTACCAAAAAGCTGGGAGATTTCATCTTTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

483

Amino Acids

53.18

Weight (kDa)

5.21

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	91 - 246	4e-22	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	280 - 400	6.3e-21	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AatII	GACGTC	1 cut(s)	1206
AccB7I	CCANNNNNTGG	1 cut(s)	365
AciI	CCGC	1 cut(s)	1356
AclWI	GGATC	5 cut(s)	40, 533, 1057, 1112, 1274
AcoI	YGGCCR	2 cut(s)	119, 1353
AcsI	RAATTY	2 cut(s)	577, 1129
AcuI	CTGAAG	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	1203
AfaI	GTAC	2 cut(s)	1272, 1419
AfiI	CCNNNNNNNGG	3 cut(s)	34, 365, 968
AflIII	ACRYGT	2 cut(s)	210, 1273
AjnI	CCWGG	1 cut(s)	903
AjuI	GAANNNNNNNTTGG	2 cut(s)	653, 685
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	8 cut(s)	22, 68, 288, 623, 693, 720, 1021, 1428
AluI	AGCT	8 cut(s)	22, 68, 288, 623, 693, 720, 1021, 1428
Alw26I	GTCTC	2 cut(s)	774, 1139
AlwI	GGATC	5 cut(s)	40, 533, 1057, 1112, 1274
AlwNI	CAGNNNCTG	1 cut(s)	1385
AoxI	GGCC	4 cut(s)	84, 119, 356, 1353
ApeKI	GCWGC	5 cut(s)	65, 217, 566, 977, 1254
ApoI	RAATTY	2 cut(s)	577, 1129
AseI	ATTAAT	1 cut(s)	768
AspS9I	GGNCC	3 cut(s)	227, 356, 1303
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	1156
AvaII	GGWCC	2 cut(s)	227, 1303
BbvI	GCAGC	5 cut(s)	77, 204, 553, 964, 1266
BccI	CCATC	4 cut(s)	94, 264, 589, 908
BceAI	ACGGC	3 cut(s)	152, 554, 1343
BciT130I	CCWGG	1 cut(s)	905
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	774, 1139
BfaI	CTAG	3 cut(s)	23, 320, 704
BfmI	CTRYAG	1 cut(s)	978
BfuI	GTATCC	1 cut(s)	878
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	6 cut(s)	66, 218, 567, 978, 1255, 1356
BlsI	GCNGC	6 cut(s)	67, 219, 568, 979, 1256, 1357
Bme1390I	CCNGG	2 cut(s)	118, 905
Bme18I	GGWCC	2 cut(s)	227, 1303
BmgT120I	GGNCC	3 cut(s)	227, 356, 1303
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	118, 905
BmrI	ACTGGG	1 cut(s)	838
BmsI	GCATC	5 cut(s)	306, 886, 920, 1216, 1317
BmuI	ACTGGG	1 cut(s)	838
BpuMI	CCSGG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	1230
BsaHI	GRCGYC	1 cut(s)	1203
BsaJI	CCNNGG	2 cut(s)	87, 904
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 365, 968
Bse1I	ACTGG	7 cut(s)	122, 237, 262, 833, 1258, 1305, 1415
Bse8I	GATNNNNATC	1 cut(s)	1230
BseBI	CCWGG	1 cut(s)	905
BseDI	CCNNGG	2 cut(s)	87, 904
BseGI	GGATG	4 cut(s)	43, 275, 811, 900
BseJI	GATNNNNATC	1 cut(s)	1230
BseLI	CCNNNNNNNGG	3 cut(s)	34, 365, 968
BseMII	CTCAG	2 cut(s)	324, 807
BseNI	ACTGG	7 cut(s)	122, 237, 262, 833, 1258, 1305, 1415
BseRI	GAGGAG	2 cut(s)	56, 187
BseXI	GCAGC	5 cut(s)	77, 204, 553, 964, 1266
BseYI	CCCAGC	1 cut(s)	1428
BsgI	GTGCAG	1 cut(s)	1371
BshFI	GGCC	4 cut(s)	86, 121, 358, 1355
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	384, 1214
BslI	CCNNNNNNNGG	3 cut(s)	34, 365, 968
BsmAI	GTCTC	2 cut(s)	774, 1139
BsmFI	GGGAC	2 cut(s)	384, 1214
BsmI	GAATGC	1 cut(s)	1181
BsnI	GGCC	4 cut(s)	86, 121, 358, 1355
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp143I	GATC	8 cut(s)	45, 204, 408, 525, 1049, 1104, 1279, 1408
BspACI	CCGC	1 cut(s)	1356
BspANI	GGCC	4 cut(s)	86, 121, 358, 1355
BspCNI	CTCAG	2 cut(s)	325, 808
BspLI	GGNNCC	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	982
BspPI	GGATC	5 cut(s)	40, 533, 1057, 1112, 1274
BsrGI	TGTACA	1 cut(s)	1270
BsrI	ACTGG	7 cut(s)	122, 237, 262, 833, 1258, 1305, 1415
BssECI	CCNNGG	2 cut(s)	87, 904
BssMI	GATC	8 cut(s)	45, 204, 408, 525, 1049, 1104, 1279, 1408
BssNI	GRCGYC	1 cut(s)	1203
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	905
Bst4CI	ACNGT	5 cut(s)	364, 862, 1168, 1295, 1345
BstACI	GRCGYC	1 cut(s)	1203
BstAPI	GCANNNNNTGC	2 cut(s)	986, 1385
BstAUI	TGTACA	1 cut(s)	1270
BstC8I	GCNNGC	4 cut(s)	718, 845, 987, 1390
BstDEI	CTNAG	4 cut(s)	333, 493, 737, 816
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstF5I	GGATG	4 cut(s)	43, 275, 811, 900
BstKTI	GATC	8 cut(s)	48, 207, 411, 528, 1052, 1107, 1282, 1411
BstMAI	GTCTC	2 cut(s)	774, 1139
BstMBI	GATC	8 cut(s)	45, 204, 408, 525, 1049, 1104, 1279, 1408
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 294, 986, 1385
BstNI	CCWGG	1 cut(s)	905
BstNSI	RCATGY	4 cut(s)	214, 490, 989, 1277
BstSCI	CCNGG	2 cut(s)	116, 903
BstSFI	CTRYAG	1 cut(s)	978
BstV1I	GCAGC	5 cut(s)	77, 204, 553, 964, 1266
BstX2I	RGATCY	2 cut(s)	45, 1279
BstXI	CCANNNNNNTGG	1 cut(s)	1428
BstYI	RGATCY	2 cut(s)	45, 1279
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	4 cut(s)	86, 121, 358, 1355
BtsCI	GGATG	4 cut(s)	43, 275, 811, 900
BtsIMutI	CAGTG	3 cut(s)	230, 826, 952
Cac8I	GCNNGC	4 cut(s)	718, 845, 987, 1390
CaiI	CAGNNNCTG	1 cut(s)	1385
Cfr13I	GGNCC	3 cut(s)	227, 356, 1303
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	1271, 1418
CviQI	GTAC	2 cut(s)	1271, 1418
DdeI	CTNAG	4 cut(s)	333, 493, 737, 816
DpnI	GATC	8 cut(s)	47, 206, 410, 527, 1051, 1106, 1281, 1410
DpnII	GATC	8 cut(s)	45, 204, 408, 525, 1049, 1104, 1279, 1408
DraI	TTTAAA	1 cut(s)	378
EaeI	YGGCCR	2 cut(s)	119, 1353
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	227, 1303
Eco57I	CTGAAG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	903
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	87
FalI	AAGNNNNNCTT	2 cut(s)	1005, 1037
FaqI	GGGAC	2 cut(s)	384, 1214
FauNDI	CATATG	2 cut(s)	712, 1405
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	66, 218, 567, 978, 1255, 1356
FokI	GGATG	4 cut(s)	50, 282, 818, 887
Fsp4HI	GCNGC	6 cut(s)	66, 218, 567, 978, 1255, 1356
FspBI	CTAG	3 cut(s)	23, 320, 704
GluI	GCNGC	6 cut(s)	66, 218, 567, 978, 1255, 1356
GsaI	CCCAGC	1 cut(s)	1432
HaeIII	GGCC	4 cut(s)	86, 121, 358, 1355
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	1203
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	4 cut(s)	32, 811, 917, 1078
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	1156
Hpy166II	GTNNAC	2 cut(s)	230, 1298
Hpy188I	TCNGA	3 cut(s)	37, 667, 916
Hpy188III	TCNNGA	7 cut(s)	97, 574, 582, 681, 815, 882, 1324
Hpy8I	GTNNAC	2 cut(s)	230, 1298
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	6 cut(s)	123, 520, 770, 1093, 1190, 1293
HpyCH4III	ACNGT	5 cut(s)	364, 862, 1168, 1295, 1345
HpyCH4IV	ACGT	2 cut(s)	252, 1203
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 294, 986, 1385
HpyF3I	CTNAG	4 cut(s)	333, 493, 737, 816
HpySE526I	ACGT	2 cut(s)	252, 1203
Hsp92I	GRCGYC	1 cut(s)	1203
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	8 cut(s)	45, 204, 408, 525, 1049, 1104, 1279, 1408
LmnI	GCTCC	3 cut(s)	5, 908, 963
Lsp1109I	GCAGC	5 cut(s)	77, 204, 553, 964, 1266
LweI	GCATC	5 cut(s)	306, 886, 920, 1216, 1317
MaeI	CTAG	3 cut(s)	23, 320, 704
MaeII	ACGT	2 cut(s)	252, 1203
MaeIII	GTNAC	2 cut(s)	253, 1162
MalI	GATC	8 cut(s)	47, 206, 410, 527, 1051, 1106, 1281, 1410
MboI	GATC	8 cut(s)	45, 204, 408, 525, 1049, 1104, 1279, 1408
MboII	GAAGA	5 cut(s)	274, 442, 505, 803, 1403
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	2 cut(s)	45, 1279
MluCI	AATT	5 cut(s)	237, 417, 577, 837, 1129
MlyI	GAGTC	1 cut(s)	911
MmeI	TCCRAC	1 cut(s)	1327
MnlI	CCTC	8 cut(s)	34, 67, 76, 165, 640, 766, 796, 1316
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	4 cut(s)	194, 377, 768, 857
MslI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	118, 905
MunI	CAATTG	1 cut(s)	837
Mva1269I	GAATGC	1 cut(s)	1181
MvaI	CCWGG	1 cut(s)	905
MwoI	GCNNNNNNNGC	4 cut(s)	118, 294, 986, 1385
NciI	CCSGG	1 cut(s)	118
NdeI	CATATG	2 cut(s)	712, 1405
NdeII	GATC	8 cut(s)	45, 204, 408, 525, 1049, 1104, 1279, 1408
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	1162
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	4 cut(s)	214, 490, 989, 1277
OliI	CACNNNNGTG	1 cut(s)	647
PaeI	GCATGC	1 cut(s)	989
PceI	AGGCCT	1 cut(s)	86
PciI	ACATGT	2 cut(s)	210, 1273
PctI	GAATGC	1 cut(s)	1181
PfeI	GAWTC	3 cut(s)	32, 811, 1078
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	6 cut(s)	67, 219, 568, 979, 1256, 1357
PleI	GAGTC	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	911
PscI	ACATGT	2 cut(s)	210, 1273
PshBI	ATTAAT	1 cut(s)	768
PsiI	TTATAA	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	903
PspFI	CCCAGC	1 cut(s)	1428
PspGI	CCWGG	1 cut(s)	903
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	3 cut(s)	227, 356, 1303
PstI	CTGCAG	1 cut(s)	982
PstNI	CAGNNNCTG	1 cut(s)	1385
PsuI	RGATCY	2 cut(s)	45, 1279
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	1272, 1419
RsaNI	GTAC	2 cut(s)	1271, 1418
RseI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
SaqAI	TTAA	4 cut(s)	194, 377, 768, 857
SatI	GCNGC	6 cut(s)	66, 218, 567, 978, 1255, 1356
Sau3AI	GATC	8 cut(s)	45, 204, 408, 525, 1049, 1104, 1279, 1408
Sau96I	GGNCC	3 cut(s)	227, 356, 1303
SchI	GAGTC	1 cut(s)	911
ScrFI	CCNGG	2 cut(s)	118, 905
SfaNI	GCATC	5 cut(s)	306, 886, 920, 1216, 1317
SfcI	CTRYAG	1 cut(s)	978
SinI	GGWCC	2 cut(s)	227, 1303
SmiMI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
SphI	GCATGC	1 cut(s)	989
Sse9I	AATT	5 cut(s)	237, 417, 577, 837, 1129
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	1356
SspMI	CTAG	3 cut(s)	23, 320, 704
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	116, 903
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	5 cut(s)	364, 862, 1168, 1295, 1345
TaiI	ACGT	2 cut(s)	255, 1206
TaqI	TCGA	2 cut(s)	96, 894
TasI	AATT	5 cut(s)	237, 417, 577, 837, 1129
TatI	WGTACW	1 cut(s)	1270
TauI	GCSGC	1 cut(s)	1358
TfiI	GAWTC	3 cut(s)	32, 811, 1078
Tru1I	TTAA	4 cut(s)	194, 377, 768, 857
Tru9I	TTAA	4 cut(s)	194, 377, 768, 857
TscAI	CASTG	3 cut(s)	237, 833, 952
TseFI	GTSAC	1 cut(s)	1162
TseI	GCWGC	5 cut(s)	65, 217, 566, 977, 1254
Tsp45I	GTSAC	1 cut(s)	1162
TspDTI	ATGAA	7 cut(s)	95, 521, 620, 804, 1025, 1174, 1428
TspRI	CASTG	3 cut(s)	237, 833, 952
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	227, 1303
VspI	ATTAAT	1 cut(s)	768
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	2 cut(s)	577, 1129
XceI	RCATGY	4 cut(s)	214, 490, 989, 1277
XspI	CTAG	3 cut(s)	23, 320, 704
ZraI	GACGTC	1 cut(s)	1204
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.