Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Forward (+)

68053005 .. 68055653

Gene Structure 2649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGCCTTCTTCACTGGTGGGATCATCCGTTGCAAGAAATTTCAAGTTTTCAACAAGGAATCCAAGATCAAGATTCTTCTCCGGAAATAACTGCTAATGAAGCAATTGGCTGGCTTTCTATCTTAGCTTTGTGGGTGTACATTTTGTCTTCATACCTTGTGGAGGCTATACAGGAAGCATCCGACTCGCTCAATATTCCTGTAGCATTTATCAGTGCCATCCTGCTCCCAGTTGTAGGAAATATGTGGTCTATCCTGTTTTCCATGAGAGAAAAACTTGACCTCACGCTTGGAGTCGCTATTGGATTATCTATACAAACATCTATGTTTACAATCCCCTTTTGTGTAATTGTTGGGTGGATAATAGGAAATCCTATGGACTTGAATTTTCAACTCTTTGAGACTGTTATATTGGTTATGGCTGTGCTAGTAGTGGCATTTATGTTGCAGCAAGGAACGTCAACCGACTTCAAAGGATTGATGCTTATCCTGTGTTATCTCATGGTTGCAGCCAGTTTTTTTTGTACATGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

178

Amino Acids

19.82

Weight (kDa)

4.14

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	36 - 171	2.2e-14	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	82
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	39, 385
AfaI	GTAC	2 cut(s)	140, 526
AfiI	CCNNNNNNNGG	2 cut(s)	163, 236
AflIII	ACRYGT	1 cut(s)	527
AgsI	TTSAA	5 cut(s)	45, 53, 385, 392, 472
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	1 cut(s)	30
Aor13HI	TCCGGA	1 cut(s)	82
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	448, 509
ApoI	RAATTY	2 cut(s)	39, 385
AspS9I	GGNCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	460, 521
BccI	CCATC	1 cut(s)	227
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	428
BfmI	CTRYAG	1 cut(s)	201
BisI	GCNGC	2 cut(s)	449, 510
BlsI	GCNGC	2 cut(s)	450, 511
BmgT120I	GGNCC	1 cut(s)	4
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	188, 471
BmuI	ACTGGG	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 236
Bse1I	ACTGG	3 cut(s)	20, 230, 513
Bse8I	GATNNNNATC	1 cut(s)	485
BseAI	TCCGGA	1 cut(s)	82
BseGI	GGATG	3 cut(s)	25, 179, 219
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	2 cut(s)	163, 236
BseNI	ACTGG	3 cut(s)	20, 230, 513
BseXI	GCAGC	2 cut(s)	460, 521
BshFI	GGCC	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	163, 236
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	6
Bsp13I	TCCGGA	1 cut(s)	82
Bsp1407I	TGTACA	2 cut(s)	138, 524
Bsp143I	GATC	2 cut(s)	22, 67
BspANI	GGCC	1 cut(s)	6
BspEI	TCCGGA	1 cut(s)	82
BspPI	GGATC	1 cut(s)	30
BsrGI	TGTACA	2 cut(s)	138, 524
BsrI	ACTGG	3 cut(s)	20, 230, 513
BssMI	GATC	2 cut(s)	22, 67
Bst4CI	ACNGT	1 cut(s)	406
BstAUI	TGTACA	2 cut(s)	138, 524
BstC8I	GCNNGC	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	25, 179, 219
BstKTI	GATC	2 cut(s)	25, 70
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	22, 67
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	531
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	460, 521
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	3 cut(s)	25, 179, 219
BtsIMutI	CAGTG	2 cut(s)	13, 220
Cac8I	GCNNGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	139, 525
CviAII	CATG	3 cut(s)	265, 502, 528
CviJI	RGCY	7 cut(s)	6, 111, 115, 128, 167, 422, 512
CviKI_1	RGCY	7 cut(s)	6, 111, 115, 128, 167, 422, 512
CviQI	GTAC	2 cut(s)	139, 525
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	2 cut(s)	24, 69
DpnII	GATC	2 cut(s)	22, 67
EcoNI	CCTNNNNNAGG	1 cut(s)	161
FaeI	CATG	3 cut(s)	268, 505, 531
FatI	CATG	3 cut(s)	264, 501, 527
Fnu4HI	GCNGC	2 cut(s)	449, 510
FokI	GGATG	3 cut(s)	12, 166, 206
Fsp4HI	GCNGC	2 cut(s)	449, 510
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	2 cut(s)	449, 510
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	3 cut(s)	268, 505, 531
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	4 cut(s)	60, 74, 185, 294
HpaII	CCGG	1 cut(s)	83
Hpy166II	GTNNAC	3 cut(s)	139, 330, 462
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	71, 83
Hpy8I	GTNNAC	3 cut(s)	139, 330, 462
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	3 cut(s)	34, 448, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	3 cut(s)	268, 505, 531
Kpn2I	TCCGGA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	22, 67
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	96, 97, 158, 213, 236, 243, 269, 503, 526
Lsp1109I	GCAGC	2 cut(s)	460, 521
LweI	GCATC	2 cut(s)	188, 471
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	458
MalI	GATC	2 cut(s)	24, 69
MboI	GATC	2 cut(s)	22, 67
MboII	GAAGA	2 cut(s)	69, 141
MfeI	CAATTG	1 cut(s)	105
MluCI	AATT	4 cut(s)	39, 105, 348, 385
MlyI	GAGTC	2 cut(s)	179, 303
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	2 cut(s)	157, 293
MroI	TCCGGA	1 cut(s)	82
MslI	CAYNNNNRTG	1 cut(s)	532
MspI	CCGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	2 cut(s)	22, 67
NlaIII	CATG	3 cut(s)	268, 505, 531
NspI	RCATGY	1 cut(s)	531
PciI	ACATGT	1 cut(s)	527
PfeI	GAWTC	2 cut(s)	60, 74
PkrI	GCNGC	2 cut(s)	450, 511
PleI	GAGTC	2 cut(s)	179, 302
PpsI	GAGTC	2 cut(s)	179, 302
PscI	ACATGT	1 cut(s)	527
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	140, 526
RsaNI	GTAC	2 cut(s)	139, 525
RseI	CAYNNNNRTG	1 cut(s)	532
SatI	GCNGC	2 cut(s)	449, 510
Sau3AI	GATC	2 cut(s)	22, 67
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	179, 303
SetI	ASST	4 cut(s)	130, 159, 285, 461
SfaNI	GCATC	2 cut(s)	188, 471
SfcI	CTRYAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	532
Sse9I	AATT	4 cut(s)	39, 105, 348, 385
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	1 cut(s)	461
TasI	AATT	4 cut(s)	39, 105, 348, 385
TatI	WGTACW	2 cut(s)	138, 524
TfiI	GAWTC	2 cut(s)	60, 74
TscAI	CASTG	2 cut(s)	20, 220
TseI	GCWGC	2 cut(s)	448, 509
TspDTI	ATGAA	2 cut(s)	114, 141
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	2 cut(s)	20, 220
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	39, 385
XceI	RCATGY	1 cut(s)	531
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.