Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Reverse (-)

5775116 .. 5776664

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTATCCAGGATATCACACTTGGAGGTGCAATTGGATCGATCTACACAAATATCCATGTTTGTGATACCCTTCTGTGTTGTCATTGGGTGGATCATGGGACAGCCAATGGACTTGAATTTTCAACTGTTTGAGACTGCCACACTTTTTATTACAGTGTTAGTCGTGGCATTTATGTTGCAGGAAGGGACGTCAAACTACTTTAAAGGCTTGATGCTTATTCTGTGCTATCTCATAGTTGCTGCCAGTTTTTTTGTACACGTCGATCCTTCAGAAGATGGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

4.49

Isoelectric Point (pI)

23.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AclWI	GGATC	3 cut(s)	45, 101, 260
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	258
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	2 cut(s)	118, 125
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	45, 101, 260
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	272
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	10
BseCI	ATCGAT	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	40
BslFI	GGGAC	2 cut(s)	114, 202
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	114, 202
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	37, 41, 93, 265
BspDI	ATCGAT	1 cut(s)	40
BspPI	GGATC	3 cut(s)	45, 101, 260
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	246
BssMI	GATC	4 cut(s)	37, 41, 93, 265
BssNI	GRCGYC	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	129, 157
BstACI	GRCGYC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	256
BstKTI	GATC	4 cut(s)	40, 44, 96, 268
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	37, 41, 93, 265
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	229
Bsu15I	ATCGAT	1 cut(s)	40
BsuTUI	ATCGAT	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	2 cut(s)	58, 97
CviJI	RGCY	2 cut(s)	106, 210
CviKI_1	RGCY	2 cut(s)	106, 210
CviQI	GTAC	1 cut(s)	257
DpnI	GATC	4 cut(s)	39, 43, 95, 267
DpnII	GATC	4 cut(s)	37, 41, 93, 265
DraI	TTTAAA	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	8
EcoRV	GATATC	1 cut(s)	15
FaeI	CATG	2 cut(s)	61, 100
FaiI	YATR	4 cut(s)	59, 98, 176, 236
FaqI	GGGAC	2 cut(s)	114, 202
FatI	CATG	2 cut(s)	57, 96
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	243
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	61, 100
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	3 cut(s)	82, 179, 279
HpyCH4III	ACNGT	2 cut(s)	129, 157
HpyCH4IV	ACGT	2 cut(s)	191, 261
HpyCH4V	TGCA	2 cut(s)	31, 181
HpySE526I	ACGT	2 cut(s)	191, 261
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	61, 100
Kzo9I	GATC	4 cut(s)	37, 41, 93, 265
LpnPI	CCDG	3 cut(s)	22, 167, 259
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	2 cut(s)	191, 261
MalI	GATC	4 cut(s)	39, 43, 95, 267
MboI	GATC	4 cut(s)	37, 41, 93, 265
MboII	GAAGA	1 cut(s)	287
MfeI	CAATTG	1 cut(s)	32
MluCI	AATT	3 cut(s)	32, 118, 283
MnlI	CCTC	1 cut(s)	19
MseI	TTAA	2 cut(s)	204, 286
MslI	CAYNNNNRTG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	10
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	10
NdeII	GATC	4 cut(s)	37, 41, 93, 265
NlaIII	CATG	2 cut(s)	61, 100
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	204, 286
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	4 cut(s)	37, 41, 93, 265
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	3 cut(s)	30, 194, 264
SfaNI	GCATC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	3 cut(s)	32, 118, 283
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	129, 157
TaiI	ACGT	2 cut(s)	194, 264
TaqI	TCGA	2 cut(s)	40, 264
TasI	AATT	3 cut(s)	32, 118, 283
TatI	WGTACW	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	204, 286
Tru9I	TTAA	2 cut(s)	204, 286
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	1 cut(s)	242
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	1 cut(s)	118
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.