Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Forward (+)

18744527 .. 18750820

Gene Structure 6294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G168500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGTTTCCATAGATGAAAAGACAGACCTTGAATATGATGAAGAGATCCCTTTTAGCTCGTCATCAGCCACCAGTAAAATGGAGGCTTTGGACTTTGAGATGATCCATTTGCATTCCCGGGCAGAATTGGCAAACTCATGGATTTCAAGACATATACGGATGAGAGTTCCGAAGAGTATCTACTTTGTCTTAATCAAAGCAAAAATCAACGTATTGCTACCATTTGGTCCGTTAGCGATTTTGCTACATTACCTTACTGGACAGCATGGATGGGTTTTCTTCTTCAGCTTAGTGGGCATTGTGCCTTTGGCAGAGCGTCTAGGATATGCGACTGAGCAACTTGCTTTCTACACAGGACCAACAGTTGGAGGTCTTTTAAATGCCACATTTGGAAATGCAACGGAAATGATTATATCAATTTATGCATTAAAGAATGGAATGATTAGGGTTGTTCAGCAATCTTTATTGGGATCAATCTTGTCCAACATGCTTTTAGTGCTCGGATGTGCCTTCTTCACTGGTGGAATTGTTCATTACCAGAAAGTTCAGGTTTTCAACAAGTCTGCCGCCGTTGTGAATTCAGGATTGCTGTTGATGGCTGTCATGGGGTTAATGTTTCCAGCTGTGCTTCATTCTACACACTCAGAGGTCCATATCGGGAAGTCAGAGTTATCTCTTTCAAGATTTAGCAGCTGTGTAATGCTAGTGGCATATGCGAGCTACCTTTTCTTTCAACTTAGAAGTCATCGTAATCTTTATAGTCCTATTGAGGAGGAAGGAAACCAGGGTGGAGATGATTCTGATGAAGAGGAGGCACCTGAGATAACTCACTGGGAAGCAATTGGCTGGCTTGCTATTTTAACTGTGTGGGTGTCCATTTTGTCTGGATACCTTGTTGATGCTATCCAGGGAGCATCTGACTCATTCAACATGCCCGTGGCATTTATCAGTGTTATACTGCTCCCAATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTCGCCATGAAGGACAAGCTTGACATCACACTTGGAGTTGCTATTGGATCTTCTACACAAATATCCATGTTTGTGATTCCCTTCTGTGTAGTTGTTGGGTGGATCATGGGACAGCGAATGGACTTGAATTTTCAACTCTTTGAGACTGCTACACTTTTTATTACAGTGTTAGTAGTGGCATTTATGTTGCAGGAAGGGACATCAAACTATTTTAAAGGCTTGATGCTTATTCTGTGCTATCTCATAGTTGCAGCCAGTTTCTTTGTACATGTCGATCCTTCGGATGCTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

434

Amino Acids

47.69

Weight (kDa)

5.11

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	814
AccB7I	CCANNNNNTGG	1 cut(s)	365
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	6 cut(s)	40, 97, 478, 1060, 1115, 1274
AcsI	RAATTY	2 cut(s)	577, 1132
AcuI	CTGAAG	1 cut(s)	268
AfaI	GTAC	1 cut(s)	1272
AfiI	CCNNNNNNNGG	2 cut(s)	365, 971
AflIII	ACRYGT	1 cut(s)	1273
AgsI	TTSAA	8 cut(s)	32, 147, 556, 681, 734, 928, 1132, 1139
AjnI	CCWGG	2 cut(s)	783, 906
AluBI	AGCT	6 cut(s)	57, 288, 623, 693, 720, 1024
AluI	AGCT	6 cut(s)	57, 288, 623, 693, 720, 1024
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	1 cut(s)	1142
AlwI	GGATC	6 cut(s)	40, 97, 478, 1060, 1115, 1274
Ama87I	CYCGRG	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	690, 980, 1256
ApoI	RAATTY	2 cut(s)	577, 1132
AspS9I	GGNCC	3 cut(s)	227, 356, 649
AsuC2I	CCSGG	2 cut(s)	118, 119
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	3 cut(s)	227, 356, 649
BanI	GGYRCC	1 cut(s)	814
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	3 cut(s)	702, 967, 1268
BccI	CCATC	2 cut(s)	264, 589
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	2 cut(s)	785, 908
BciVI	GTATCC	1 cut(s)	881
BcnI	CCSGG	2 cut(s)	118, 119
BcoDI	GTCTC	1 cut(s)	1142
BfaI	CTAG	2 cut(s)	320, 704
BfmI	CTRYAG	1 cut(s)	981
BfuI	GTATCC	1 cut(s)	881
BisI	GCNGC	4 cut(s)	567, 691, 981, 1257
BlsI	GCNGC	4 cut(s)	568, 692, 982, 1258
Bme1390I	CCNGG	4 cut(s)	118, 119, 785, 908
Bme18I	GGWCC	3 cut(s)	227, 356, 649
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	3 cut(s)	227, 356, 649
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	4 cut(s)	118, 119, 785, 908
BmrI	ACTGGG	1 cut(s)	841
BmsI	GCATC	4 cut(s)	889, 923, 1218, 1279
BmuI	ACTGGG	1 cut(s)	841
BpuMI	CCSGG	2 cut(s)	118, 119
BsaJI	CCNNGG	4 cut(s)	117, 784, 907, 936
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 971
Bse1I	ACTGG	5 cut(s)	72, 262, 523, 836, 1260
BseBI	CCWGG	2 cut(s)	785, 908
BseDI	CCNNGG	4 cut(s)	117, 784, 907, 936
BseGI	GGATG	4 cut(s)	165, 275, 509, 1294
BseLI	CCNNNNNNNGG	2 cut(s)	365, 971
BseMII	CTCAG	3 cut(s)	324, 657, 810
BseNI	ACTGG	5 cut(s)	72, 262, 523, 836, 1260
BseRI	GAGGAG	2 cut(s)	785, 824
BseXI	GCAGC	3 cut(s)	702, 967, 1268
BshNI	GGYRCC	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	501
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	2 cut(s)	1128, 1216
BslI	CCNNNNNNNGG	2 cut(s)	365, 971
BsmAI	GTCTC	1 cut(s)	1142
BsmFI	GGGAC	2 cut(s)	1128, 1216
BsmI	GAATGC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp143I	GATC	6 cut(s)	45, 102, 470, 1052, 1107, 1279
BspACI	CCGC	1 cut(s)	567
BspCNI	CTCAG	3 cut(s)	325, 656, 811
BspLI	GGNNCC	1 cut(s)	816
BspMAI	CTGCAG	1 cut(s)	985
BspPI	GGATC	6 cut(s)	40, 97, 478, 1060, 1115, 1274
BspT107I	GGYRCC	1 cut(s)	814
BsrGI	TGTACA	1 cut(s)	1270
BsrI	ACTGG	5 cut(s)	72, 262, 523, 836, 1260
BssECI	CCNNGG	4 cut(s)	117, 784, 907, 936
BssMI	GATC	6 cut(s)	45, 102, 470, 1052, 1107, 1279
Bst2UI	CCWGG	2 cut(s)	785, 908
Bst4CI	ACNGT	3 cut(s)	364, 865, 1171
Bst6I	CTCTTC	3 cut(s)	36, 167, 801
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstAUI	TGTACA	1 cut(s)	1270
BstC8I	GCNNGC	4 cut(s)	718, 848, 852, 990
BstDEI	CTNAG	5 cut(s)	289, 333, 643, 737, 819
BstDSI	CCRYGG	1 cut(s)	936
BstF5I	GGATG	4 cut(s)	165, 275, 509, 1294
BstKTI	GATC	6 cut(s)	48, 105, 473, 1055, 1110, 1282
BstMAI	GTCTC	1 cut(s)	1142
BstMBI	GATC	6 cut(s)	45, 102, 470, 1052, 1107, 1279
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 294, 496, 989
BstNI	CCWGG	2 cut(s)	785, 908
BstNSI	RCATGY	4 cut(s)	490, 934, 992, 1277
BstSCI	CCNGG	4 cut(s)	116, 117, 783, 906
BstSFI	CTRYAG	1 cut(s)	981
BstV1I	GCAGC	3 cut(s)	702, 967, 1268
BstX2I	RGATCY	2 cut(s)	45, 1052
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	2 cut(s)	45, 1052
BsuI	GTATCC	1 cut(s)	881
BtgI	CCRYGG	1 cut(s)	936
BtsCI	GGATG	4 cut(s)	165, 275, 509, 1294
BtsIMutI	CAGTG	4 cut(s)	516, 829, 955, 1176
Cac8I	GCNNGC	4 cut(s)	718, 848, 852, 990
Cfr13I	GGNCC	3 cut(s)	227, 356, 649
Cfr9I	CCCGGG	1 cut(s)	117
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	1271
CviQI	GTAC	1 cut(s)	1271
DdeI	CTNAG	5 cut(s)	289, 333, 643, 737, 819
DpnI	GATC	6 cut(s)	47, 104, 472, 1054, 1109, 1281
DpnII	GATC	6 cut(s)	45, 102, 470, 1052, 1107, 1279
DraI	TTTAAA	2 cut(s)	378, 1219
Eam1104I	CTCTTC	3 cut(s)	36, 167, 801
EarI	CTCTTC	3 cut(s)	36, 167, 801
Eco47I	GGWCC	3 cut(s)	227, 356, 649
Eco57I	CTGAAG	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	2 cut(s)	783, 906
EcoT22I	ATGCAT	1 cut(s)	427
FaqI	GGGAC	2 cut(s)	1128, 1216
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	4 cut(s)	567, 691, 981, 1257
FokI	GGATG	3 cut(s)	172, 282, 516
Fsp4HI	GCNGC	4 cut(s)	567, 691, 981, 1257
FspBI	CTAG	2 cut(s)	320, 704
GluI	GCNGC	4 cut(s)	567, 691, 981, 1257
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	3 cut(s)	797, 920, 1081
HpaII	CCGG	1 cut(s)	118
Hpy188I	TCNGA	7 cut(s)	171, 503, 646, 667, 802, 919, 1288
Hpy188III	TCNNGA	5 cut(s)	147, 582, 658, 681, 885
HpyAV	CCTTC	6 cut(s)	520, 770, 1009, 1096, 1193, 1293
HpyCH4III	ACNGT	3 cut(s)	364, 865, 1171
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	7 cut(s)	112, 398, 425, 983, 992, 1195, 1256
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 294, 496, 989
HpyF3I	CTNAG	5 cut(s)	289, 333, 643, 737, 819
HpySE526I	ACGT	1 cut(s)	210
Kzo9I	GATC	6 cut(s)	45, 102, 470, 1052, 1107, 1279
LmnI	GCTCC	2 cut(s)	911, 966
Lsp1109I	GCAGC	3 cut(s)	702, 967, 1268
LweI	GCATC	4 cut(s)	889, 923, 1218, 1279
MaeI	CTAG	2 cut(s)	320, 704
MaeII	ACGT	1 cut(s)	210
MalI	GATC	6 cut(s)	47, 104, 472, 1054, 1109, 1281
MboI	GATC	6 cut(s)	45, 102, 470, 1052, 1107, 1279
MboII	GAAGA	7 cut(s)	53, 184, 271, 274, 505, 818, 1047
MfeI	CAATTG	2 cut(s)	840, 966
MflI	RGATCY	2 cut(s)	45, 1052
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	7 cut(s)	125, 417, 525, 577, 840, 966, 1132
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	2 cut(s)	346, 507
MnlI	CCTC	7 cut(s)	76, 362, 640, 763, 766, 802, 805
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	7 cut(s)	191, 377, 428, 611, 860, 1218, 1300
MslI	CAYNNNNRTG	3 cut(s)	935, 993, 1076
MspA1I	CMGCKG	2 cut(s)	623, 693
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	4 cut(s)	118, 119, 785, 908
MunI	CAATTG	2 cut(s)	840, 966
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	785, 908
MwoI	GCNNNNNNNGC	4 cut(s)	128, 294, 496, 989
NciI	CCSGG	2 cut(s)	118, 119
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	6 cut(s)	45, 102, 470, 1052, 1107, 1279
NlaIV	GGNNCC	1 cut(s)	816
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	4 cut(s)	490, 934, 992, 1277
PaeI	GCATGC	1 cut(s)	992
PciI	ACATGT	1 cut(s)	1273
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	797, 1081
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	568, 692, 982, 1258
PleI	GAGTC	1 cut(s)	914
PpsI	GAGTC	1 cut(s)	914
PscI	ACATGT	1 cut(s)	1273
Psp6I	CCWGG	2 cut(s)	783, 906
PspGI	CCWGG	2 cut(s)	783, 906
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	3 cut(s)	227, 356, 649
PstI	CTGCAG	1 cut(s)	985
PsuI	RGATCY	2 cut(s)	45, 1052
PvuII	CAGCTG	2 cut(s)	623, 693
RsaI	GTAC	1 cut(s)	1272
RsaNI	GTAC	1 cut(s)	1271
RseI	CAYNNNNRTG	3 cut(s)	935, 993, 1076
SaqAI	TTAA	7 cut(s)	191, 377, 428, 611, 860, 1218, 1300
SatI	GCNGC	4 cut(s)	567, 691, 981, 1257
Sau3AI	GATC	6 cut(s)	45, 102, 470, 1052, 1107, 1279
Sau96I	GGNCC	3 cut(s)	227, 356, 649
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	4 cut(s)	118, 119, 785, 908
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	4 cut(s)	889, 923, 1218, 1279
SfcI	CTRYAG	1 cut(s)	981
SinI	GGWCC	3 cut(s)	227, 356, 649
SmaI	CCCGGG	1 cut(s)	119
SmiMI	CAYNNNNRTG	3 cut(s)	935, 993, 1076
SphI	GCATGC	1 cut(s)	992
Sse9I	AATT	7 cut(s)	125, 417, 525, 577, 840, 966, 1132
SsiI	CCGC	1 cut(s)	567
SspMI	CTAG	2 cut(s)	320, 704
StyD4I	CCNGG	4 cut(s)	116, 117, 783, 906
TaaI	ACNGT	3 cut(s)	364, 865, 1171
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	1278
TasI	AATT	7 cut(s)	125, 417, 525, 577, 840, 966, 1132
TatI	WGTACW	1 cut(s)	1270
TauI	GCSGC	1 cut(s)	569
TfiI	GAWTC	2 cut(s)	797, 1081
Tru1I	TTAA	7 cut(s)	191, 377, 428, 611, 860, 1218, 1300
Tru9I	TTAA	7 cut(s)	191, 377, 428, 611, 860, 1218, 1300
TscAI	CASTG	4 cut(s)	523, 836, 955, 1176
TseI	GCWGC	3 cut(s)	690, 980, 1256
TspDTI	ATGAA	6 cut(s)	30, 54, 521, 620, 819, 1028
TspGWI	ACGGA	3 cut(s)	172, 219, 416
TspMI	CCCGGG	1 cut(s)	117
TspRI	CASTG	4 cut(s)	523, 836, 955, 1176
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	3 cut(s)	227, 356, 649
XapI	RAATTY	2 cut(s)	577, 1132
XceI	RCATGY	4 cut(s)	490, 934, 992, 1277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	76
XmaI	CCCGGG	1 cut(s)	117
XspI	CTAG	2 cut(s)	320, 704
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.