Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Forward (+)

65592463 .. 65597693

Gene Structure 5231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGAACACACTTTGTATTTAGATCCTCCTGCTAGGTCTGAGATGGGAGCCATAGGTGTAAAGGTAGACCTTGAATCAGATGAGGAGATCCCATTTAGCTCATCAGCAGCTATGAATAAAGTAGAGGCCTTGGATTTTGAGATGGTTCATTTGCCTTCGCGGCCAGTTATGCCAAACTCATGGATTGCAAGACATATAGGGATAAGAGCCGTGAGGAGTATTTATATTGTCTTATTAAAAGCAAAGATCAACATGTTGCTACCGTTTGGTCCACTGGCAATTCTGCTGCATTACGTTACTGGAAAGCATGGATGGGTCTTTTTCTTCAGCTTATTGGGCATCATACCTTTGGCAGAGCGTCTAGGATATGCGACTGAGCAACTCGCTTTCTACACAGGGCCAACAGTTGGGGGACTTTTAAATGCCACATTTGGAAATGCAACAGAAATGATCATATCAATTTATGCATTGAAGAATGGAATGATTAGGGTTGTTCAACAATCGTTGTTGGGGTCAATCTTGTCAAACATGCTCTTAGTTCTGGGTTGTGCCTTCTTCTCTGGTGGGATCGTTCATTACAATAAAGTTCAGGTGTTCAACAAGTCGGCTGCCGTCGTGAATTCTGGATTGTTGTTGATGGCTGTAATGGGGATAATGTTTCCAGCTGTGCTTCATTTTACACGCACAGAGGTGCATTTTGGGAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCTGTATAATGCTAGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCATCGTAGTCTTTATAACCCCATTAATGAGGAAGGAGACAATGTTGAAGATTGTGATGAGGATGAGATTCCTGAGATAACTCACTGGGAAGCAATTGGCTGGCTTTCTGTTTTAACTGTGTGGGTGTCCATTTTGTCCGGATACCTTGTCGATGCCATCCAGGGAGCATCAGACTCTTTCAACATTCCTGTGGCATTTATCAGTGTCATTTTGCTCCCTATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCATGAAAGATAAGCTTGACATTACACTTGGAGTTGCAATTGGATCATCAACACAAATATCCATGTTTGTGATTCCCTTCTGTGTGGTTGTTGGGTGGATCATGGGAGAGCCAATGGACTTGAATTTTCAACTCTTTGAGACTGCTACACTCTTTATCACCGTGCTTGTAGTGGCATTTATGTTGCAGGAAGGAACGTCAAACTACTTCAAAGGATTGATGCTTATCCTGTGTTATCTCATAGTTGCAGCCAGTTTTTTTGTACATGTAGATCCTTCAAATGATGCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

447

Amino Acids

49.02

Weight (kDa)

5.18

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	105 - 260	3.1e-22	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	294 - 435	1.2e-23	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	801
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	66
AccII	CGCG	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	923
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	6 cut(s)	17, 82, 575, 1099, 1154, 1313
AcoI	YGGCCR	1 cut(s)	161
AcsI	RAATTY	2 cut(s)	619, 1171
AcuI	CTGAAG	1 cut(s)	310
AfaI	GTAC	1 cut(s)	1311
AfiI	CCNNNNNNNGG	2 cut(s)	407, 1010
AflIII	ACRYGT	2 cut(s)	252, 1312
AjnI	CCWGG	1 cut(s)	945
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AleI	CACNNNNGTG	1 cut(s)	689
AluBI	AGCT	7 cut(s)	99, 110, 330, 665, 735, 762, 1063
AluI	AGCT	7 cut(s)	99, 110, 330, 665, 735, 762, 1063
Alw26I	GTCTC	2 cut(s)	816, 1181
AlwI	GGATC	6 cut(s)	17, 82, 575, 1099, 1154, 1313
Aor13HI	TCCGGA	1 cut(s)	923
AoxI	GGCC	3 cut(s)	126, 161, 398
ApeKI	GCWGC	5 cut(s)	107, 286, 608, 1019, 1295
ApoI	RAATTY	2 cut(s)	619, 1171
AseI	ATTAAT	1 cut(s)	810
AspS9I	GGNCC	2 cut(s)	269, 398
AsuHPI	GGTGA	1 cut(s)	1198
AvaII	GGWCC	1 cut(s)	269
BbvI	GCAGC	5 cut(s)	119, 273, 595, 1006, 1307
BccI	CCATC	5 cut(s)	37, 136, 306, 631, 950
BceAI	ACGGC	2 cut(s)	194, 596
BciT130I	CCWGG	1 cut(s)	947
BciVI	GTATCC	1 cut(s)	920
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	816, 1181
BfaI	CTAG	3 cut(s)	33, 362, 746
BfmI	CTRYAG	1 cut(s)	1020
BfuI	GTATCC	1 cut(s)	920
BglI	GCCNNNNNGGC	1 cut(s)	160
BisI	GCNGC	6 cut(s)	108, 161, 287, 609, 1020, 1296
BlsI	GCNGC	6 cut(s)	109, 162, 288, 610, 1021, 1297
Bme1390I	CCNGG	1 cut(s)	947
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	269, 398
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	947
BmrI	ACTGGG	1 cut(s)	880
BmsI	GCATC	5 cut(s)	348, 928, 962, 1257, 1321
BmuI	ACTGGG	1 cut(s)	880
BsaBI	GATNNNNATC	1 cut(s)	1271
BsaJI	CCNNGG	2 cut(s)	129, 946
BsaWI	WCCGGW	1 cut(s)	923
BsaXI	ACNNNNNCTCC	2 cut(s)	813, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 1010
Bse1I	ACTGG	5 cut(s)	164, 279, 304, 875, 1299
Bse8I	GATNNNNATC	1 cut(s)	1271
BseAI	TCCGGA	1 cut(s)	923
BseBI	CCWGG	1 cut(s)	947
BseDI	CCNNGG	2 cut(s)	129, 946
BseGI	GGATG	3 cut(s)	317, 853, 942
BseJI	GATNNNNATC	1 cut(s)	1271
BseLI	CCNNNNNNNGG	2 cut(s)	407, 1010
BseMII	CTCAG	3 cut(s)	30, 366, 849
BseNI	ACTGG	5 cut(s)	164, 279, 304, 875, 1299
BseRI	GAGGAG	2 cut(s)	98, 229
BseXI	GCAGC	5 cut(s)	119, 273, 595, 1006, 1307
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	128, 163, 400
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	1 cut(s)	426
BslI	CCNNNNNNNGG	2 cut(s)	407, 1010
BsmAI	GTCTC	2 cut(s)	816, 1181
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	3 cut(s)	128, 163, 400
Bsp13I	TCCGGA	1 cut(s)	923
Bsp1407I	TGTACA	1 cut(s)	1309
Bsp143I	GATC	8 cut(s)	22, 87, 246, 450, 567, 1091, 1146, 1318
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	3 cut(s)	128, 163, 400
BspCNI	CTCAG	3 cut(s)	31, 367, 850
BspEI	TCCGGA	1 cut(s)	923
BspFNI	CGCG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	1024
BspPI	GGATC	6 cut(s)	17, 82, 575, 1099, 1154, 1313
BsrGI	TGTACA	1 cut(s)	1309
BsrI	ACTGG	5 cut(s)	164, 279, 304, 875, 1299
BssECI	CCNNGG	2 cut(s)	129, 946
BssMI	GATC	8 cut(s)	22, 87, 246, 450, 567, 1091, 1146, 1318
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	947
Bst4CI	ACNGT	4 cut(s)	264, 406, 904, 1210
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstAUI	TGTACA	1 cut(s)	1309
BstC8I	GCNNGC	3 cut(s)	760, 887, 1029
BstDEI	CTNAG	5 cut(s)	39, 375, 535, 779, 858
BstENI	CCTNNNNNAGG	1 cut(s)	1008
BstF5I	GGATG	3 cut(s)	317, 853, 942
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	8 cut(s)	25, 90, 249, 453, 570, 1094, 1149, 1321
BstMAI	GTCTC	2 cut(s)	816, 1181
BstMBI	GATC	8 cut(s)	22, 87, 246, 450, 567, 1091, 1146, 1318
BstMWI	GCNNNNNNNGC	4 cut(s)	160, 169, 336, 1028
BstNI	CCWGG	1 cut(s)	947
BstNSI	RCATGY	4 cut(s)	256, 532, 1031, 1316
BstSCI	CCNGG	1 cut(s)	945
BstSFI	CTRYAG	1 cut(s)	1020
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	5 cut(s)	119, 273, 595, 1006, 1307
BstX2I	RGATCY	3 cut(s)	22, 87, 1318
BstXI	CCANNNNNNTGG	1 cut(s)	180
BstYI	RGATCY	3 cut(s)	22, 87, 1318
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	3 cut(s)	128, 163, 400
BtsCI	GGATG	3 cut(s)	317, 853, 942
BtsIMutI	CAGTG	3 cut(s)	272, 868, 994
Cac8I	GCNNGC	3 cut(s)	760, 887, 1029
Cfr13I	GGNCC	2 cut(s)	269, 398
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	1310
CviQI	GTAC	1 cut(s)	1310
DdeI	CTNAG	5 cut(s)	39, 375, 535, 779, 858
DpnI	GATC	8 cut(s)	24, 89, 248, 452, 569, 1093, 1148, 1320
DpnII	GATC	8 cut(s)	22, 87, 246, 450, 567, 1091, 1146, 1318
DraI	TTTAAA	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	310
EcoNI	CCTNNNNNAGG	1 cut(s)	1008
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	945
EcoT14I	CCWWGG	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	129
FalI	AAGNNNNNCTT	2 cut(s)	1047, 1079
FaqI	GGGAC	1 cut(s)	426
FauNDI	CATATG	1 cut(s)	754
FbaI	TGATCA	1 cut(s)	450
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	6 cut(s)	108, 161, 287, 609, 1020, 1296
FokI	GGATG	3 cut(s)	324, 860, 929
Fsp4HI	GCNGC	6 cut(s)	108, 161, 287, 609, 1020, 1296
FspBI	CTAG	3 cut(s)	33, 362, 746
GluI	GCNGC	6 cut(s)	108, 161, 287, 609, 1020, 1296
HaeIII	GGCC	3 cut(s)	128, 163, 400
HapII	CCGG	1 cut(s)	924
HgaI	GACGC	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	1061
HinfI	GANTC	4 cut(s)	74, 853, 959, 1120
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	1 cut(s)	1198
Hpy166II	GTNNAC	2 cut(s)	67, 272
Hpy188I	TCNGA	4 cut(s)	40, 79, 709, 958
Hpy188III	TCNNGA	5 cut(s)	616, 624, 723, 857, 924
Hpy8I	GTNNAC	2 cut(s)	67, 272
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	6 cut(s)	165, 562, 812, 1135, 1232, 1332
HpyCH4III	ACNGT	4 cut(s)	264, 406, 904, 1210
HpyCH4IV	ACGT	2 cut(s)	294, 1244
HpyF10VI	GCNNNNNNNGC	4 cut(s)	160, 169, 336, 1028
HpyF3I	CTNAG	5 cut(s)	39, 375, 535, 779, 858
HpySE526I	ACGT	2 cut(s)	294, 1244
Kpn2I	TCCGGA	1 cut(s)	923
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	8 cut(s)	22, 87, 246, 450, 567, 1091, 1146, 1318
LmnI	GCTCC	3 cut(s)	47, 950, 1005
Lsp1109I	GCAGC	5 cut(s)	119, 273, 595, 1006, 1307
LweI	GCATC	5 cut(s)	348, 928, 962, 1257, 1321
MaeI	CTAG	3 cut(s)	33, 362, 746
MaeII	ACGT	2 cut(s)	294, 1244
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	8 cut(s)	24, 89, 248, 452, 569, 1093, 1148, 1320
MboI	GATC	8 cut(s)	22, 87, 246, 450, 567, 1091, 1146, 1318
MboII	GAAGA	4 cut(s)	316, 484, 547, 845
MfeI	CAATTG	2 cut(s)	879, 1086
MflI	RGATCY	3 cut(s)	22, 87, 1318
MluCI	AATT	6 cut(s)	279, 459, 619, 879, 1086, 1171
MlyI	GAGTC	1 cut(s)	953
MnlI	CCTC	7 cut(s)	36, 76, 118, 207, 682, 808, 838
Mph1103I	ATGCAT	1 cut(s)	469
MroI	TCCGGA	1 cut(s)	923
MseI	TTAA	4 cut(s)	236, 419, 810, 899
MslI	CAYNNNNRTG	4 cut(s)	689, 974, 1032, 1115
MspA1I	CMGCKG	1 cut(s)	665
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	1 cut(s)	947
MunI	CAATTG	2 cut(s)	879, 1086
MvaI	CCWGG	1 cut(s)	947
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	4 cut(s)	160, 169, 336, 1028
NdeI	CATATG	1 cut(s)	754
NdeII	GATC	8 cut(s)	22, 87, 246, 450, 567, 1091, 1146, 1318
NlaIV	GGNNCC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	4 cut(s)	256, 532, 1031, 1316
OliI	CACNNNNGTG	1 cut(s)	689
PaeI	GCATGC	1 cut(s)	1031
PceI	AGGCCT	1 cut(s)	128
PciI	ACATGT	2 cut(s)	252, 1312
PfeI	GAWTC	3 cut(s)	74, 853, 1120
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	6 cut(s)	109, 162, 288, 610, 1021, 1297
PleI	GAGTC	1 cut(s)	953
PpsI	GAGTC	1 cut(s)	953
PscI	ACATGT	2 cut(s)	252, 1312
PshBI	ATTAAT	1 cut(s)	810
PsiI	TTATAA	1 cut(s)	801
Psp6I	CCWGG	1 cut(s)	945
PspGI	CCWGG	1 cut(s)	945
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	2 cut(s)	269, 398
PstI	CTGCAG	1 cut(s)	1024
PsuI	RGATCY	3 cut(s)	22, 87, 1318
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	1 cut(s)	1311
RsaNI	GTAC	1 cut(s)	1310
RseI	CAYNNNNRTG	4 cut(s)	689, 974, 1032, 1115
SaqAI	TTAA	4 cut(s)	236, 419, 810, 899
SatI	GCNGC	6 cut(s)	108, 161, 287, 609, 1020, 1296
Sau3AI	GATC	8 cut(s)	22, 87, 246, 450, 567, 1091, 1146, 1318
Sau96I	GGNCC	2 cut(s)	269, 398
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	1 cut(s)	947
SfaNI	GCATC	5 cut(s)	348, 928, 962, 1257, 1321
SfcI	CTRYAG	1 cut(s)	1020
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	4 cut(s)	689, 974, 1032, 1115
SphI	GCATGC	1 cut(s)	1031
Sse9I	AATT	6 cut(s)	279, 459, 619, 879, 1086, 1171
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	3 cut(s)	33, 362, 746
StuI	AGGCCT	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	945
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	4 cut(s)	264, 406, 904, 1210
TaiI	ACGT	2 cut(s)	297, 1247
TaqI	TCGA	1 cut(s)	936
TasI	AATT	6 cut(s)	279, 459, 619, 879, 1086, 1171
TatI	WGTACW	1 cut(s)	1309
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	3 cut(s)	74, 853, 1120
Tru1I	TTAA	4 cut(s)	236, 419, 810, 899
Tru9I	TTAA	4 cut(s)	236, 419, 810, 899
TscAI	CASTG	3 cut(s)	279, 875, 994
TseI	GCWGC	5 cut(s)	107, 286, 608, 1019, 1295
TspDTI	ATGAA	5 cut(s)	128, 137, 563, 662, 1067
TspRI	CASTG	3 cut(s)	279, 875, 994
Van91I	CCANNNNNTGG	1 cut(s)	407
VpaK11BI	GGWCC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	810
XagI	CCTNNNNNAGG	1 cut(s)	1008
XapI	RAATTY	2 cut(s)	619, 1171
XceI	RCATGY	4 cut(s)	256, 532, 1031, 1316
XmiI	GTMKAC	1 cut(s)	66
XspI	CTAG	3 cut(s)	33, 362, 746
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.