Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Reverse (-)

5757763 .. 5761466

Gene Structure 3704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGATTCATTTGCAGTCACGGGCAGATTTGGCGAACTCATGGATTTCAAGACATATGTGGATAAGAGTTCCGAGAAGTATTTATATAGTCTTATTTAAAGCAAAGATCAATGTGTTGCTACCCTTTGGTCCATTGGCAATCTTGCTACATTATATTACTGGAAAGCATGGATGGGTCTTCTTCTTCAGCTTAGTGGGCATCGTACCTTTAGCAGAGCGTATAGGATATGCGACTGAGCAACTTGCTTTTTACACAGGACCAACAGTTGGGGGTCTGTTAAATGCCACATTTGGAAATGCAACGGAAATGATTATATCAATATATGCATTAAAGAACGGAATGATAAGGGTTGTTCAGCAGTCATTATTGGGATCAATCTTGTCCAACATGCTCTTAGTGCTCGGATGTGCCTTCTTCACTGGTGGAATCATTCATTACCAAAAAATTCAGGTTTTCAACAAGTCTGCCGCCCTTGTGAATTCTGGATTGCTGTTGATGGCTGTCATGGGGTTAATGTTTCCAGCTGTGCTTCATTTTACGCACTCAGAGATCCACTTTGGGAAGTCAGAGTTGTCTCTTTCAAGATTTAGCAGCTGTGTAATGCTAGTGGCATATGCAAGTTACCTCTTCTTTCAACTTAGAAGTCATCGTAATCTTTATAATCCCATTGAGGAGGAAGGAGTCGGGGATGAAGATGAATCCGATGAGGAAGAGGCTCCCGAGATAACTCATTGGGAAGCAATTGGCTGGCTTGCTGTTTTAACTGTCTGGGTGTCCGTTTTGTCTGGATACCTTGTTGATGCTATCCAGGGAGCATCTGACTCATTCAACATGCCTGTGGCATTTATCAGTGTTATACTACTACCAATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCATGAAGGACAAGCTTGATATCACACTTGGAGTTGCAATTGGATCGATCTACACAAATATCCATGTTTGTGATACCCTTCTGCGTAGTTGTGGGGTGGATCATGGGACAGCCAATGGACTTGAATTTTCAACTGTTCGAGACTGCCACACTTTTTATTACAGTGTTAGTCGTGGCATTTATGTTGCAGGAAGGGACGTCAAACTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

374

Amino Acids

41.15

Weight (kDa)

6.14

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	58 - 213	9.6e-23	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	247 - 326	5.4e-13	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AatII	GACGTC	1 cut(s)	1110
AccB7I	CCANNNNNTGG	1 cut(s)	266
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	4 cut(s)	379, 544, 961, 1017
AcsI	RAATTY	3 cut(s)	444, 478, 1034
AcuI	CTGAAG	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	1107
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	266, 872
AgsI	TTSAA	7 cut(s)	48, 457, 582, 635, 829, 1034, 1041
AjnI	CCWGG	1 cut(s)	807
AluBI	AGCT	4 cut(s)	189, 524, 594, 925
AluI	AGCT	4 cut(s)	189, 524, 594, 925
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	2 cut(s)	579, 1044
AlwI	GGATC	4 cut(s)	379, 544, 961, 1017
Ama87I	CYCGRG	1 cut(s)	719
ApeKI	GCWGC	2 cut(s)	591, 881
ApoI	RAATTY	3 cut(s)	444, 478, 1034
AspS9I	GGNCC	2 cut(s)	128, 257
AvaI	CYCGRG	1 cut(s)	719
AvaII	GGWCC	2 cut(s)	128, 257
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	603, 868
BccI	CCATC	2 cut(s)	165, 490
BcgI	CGANNNNNNTGC	2 cut(s)	936, 970
BciT130I	CCWGG	1 cut(s)	809
BciVI	GTATCC	1 cut(s)	782
BcoDI	GTCTC	2 cut(s)	579, 1044
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	882
BfuI	GTATCC	1 cut(s)	782
BisI	GCNGC	3 cut(s)	468, 592, 882
BlsI	GCNGC	3 cut(s)	469, 593, 883
Bme1390I	CCNGG	1 cut(s)	809
Bme18I	GGWCC	2 cut(s)	128, 257
BmeT110I	CYCGRG	1 cut(s)	719
BmgT120I	GGNCC	2 cut(s)	128, 257
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	809
BmsI	GCATC	3 cut(s)	207, 790, 824
BpiI	GAAGAC	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	956
BsaHI	GRCGYC	1 cut(s)	1107
BsaJI	CCNNGG	1 cut(s)	808
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 872
Bse1I	ACTGG	2 cut(s)	163, 424
BseBI	CCWGG	1 cut(s)	809
BseCI	ATCGAT	1 cut(s)	956
BseDI	CCNNGG	1 cut(s)	808
BseGI	GGATG	3 cut(s)	176, 410, 694
BseLI	CCNNNNNNNGG	2 cut(s)	266, 872
BseMII	CTCAG	2 cut(s)	225, 558
BseNI	ACTGG	2 cut(s)	163, 424
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	603, 868
BshVI	ATCGAT	1 cut(s)	956
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	719
BslFI	GGGAC	2 cut(s)	1030, 1118
BslI	CCNNNNNNNGG	2 cut(s)	266, 872
BsmAI	GTCTC	2 cut(s)	579, 1044
BsmFI	GGGAC	2 cut(s)	1030, 1118
BsoBI	CYCGRG	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	6 cut(s)	105, 371, 549, 953, 957, 1009
BspACI	CCGC	1 cut(s)	468
BspCNI	CTCAG	2 cut(s)	226, 557
BspDI	ATCGAT	1 cut(s)	956
BspLI	GGNNCC	1 cut(s)	717
BspMAI	CTGCAG	1 cut(s)	886
BspPI	GGATC	4 cut(s)	379, 544, 961, 1017
BsrI	ACTGG	2 cut(s)	163, 424
BssECI	CCNNGG	1 cut(s)	808
BssMI	GATC	6 cut(s)	105, 371, 549, 953, 957, 1009
BssNI	GRCGYC	1 cut(s)	1107
Bst2UI	CCWGG	1 cut(s)	809
Bst4CI	ACNGT	4 cut(s)	265, 766, 1045, 1073
Bst6I	CTCTTC	2 cut(s)	632, 705
BstACI	GRCGYC	1 cut(s)	1107
BstAPI	GCANNNNNTGC	1 cut(s)	890
BstC8I	GCNNGC	3 cut(s)	749, 753, 891
BstDEI	CTNAG	5 cut(s)	190, 234, 394, 544, 638
BstF5I	GGATG	3 cut(s)	176, 410, 694
BstKTI	GATC	6 cut(s)	108, 374, 552, 956, 960, 1012
BstMAI	GTCTC	2 cut(s)	579, 1044
BstMBI	GATC	6 cut(s)	105, 371, 549, 953, 957, 1009
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 195, 397, 890
BstNI	CCWGG	1 cut(s)	809
BstNSI	RCATGY	3 cut(s)	391, 835, 893
BstSCI	CCNGG	1 cut(s)	807
BstSFI	CTRYAG	1 cut(s)	882
BstV1I	GCAGC	2 cut(s)	603, 868
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	549
Bsu15I	ATCGAT	1 cut(s)	956
BsuI	GTATCC	1 cut(s)	782
BsuTUI	ATCGAT	1 cut(s)	956
BtsCI	GGATG	3 cut(s)	176, 410, 694
BtsIMutI	CAGTG	3 cut(s)	417, 856, 1078
Cac8I	GCNNGC	3 cut(s)	749, 753, 891
Cfr13I	GGNCC	2 cut(s)	128, 257
ClaI	ATCGAT	1 cut(s)	956
Csp6I	GTAC	1 cut(s)	203
CviJI	RGCY	9 cut(s)	189, 500, 524, 594, 716, 747, 751, 925, 1022
CviKI_1	RGCY	9 cut(s)	189, 500, 524, 594, 716, 747, 751, 925, 1022
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	5 cut(s)	190, 234, 394, 544, 638
DpnI	GATC	6 cut(s)	107, 373, 551, 955, 959, 1011
DpnII	GATC	6 cut(s)	105, 371, 549, 953, 957, 1009
DraI	TTTAAA	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	632, 705
EarI	CTCTTC	2 cut(s)	632, 705
Eco32I	GATATC	1 cut(s)	931
Eco47I	GGWCC	2 cut(s)	128, 257
Eco57I	CTGAAG	1 cut(s)	169
Eco88I	CYCGRG	1 cut(s)	719
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	807
EcoRV	GATATC	1 cut(s)	931
EcoT22I	ATGCAT	1 cut(s)	328
FaqI	GGGAC	2 cut(s)	1030, 1118
FauNDI	CATATG	2 cut(s)	54, 613
Fnu4HI	GCNGC	3 cut(s)	468, 592, 882
FokI	GGATG	3 cut(s)	183, 417, 701
Fsp4HI	GCNGC	3 cut(s)	468, 592, 882
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	3 cut(s)	468, 592, 882
Hin1I	GRCGYC	1 cut(s)	1107
HindIII	AAGCTT	1 cut(s)	923
HinfI	GANTC	5 cut(s)	4, 426, 681, 698, 821
Hpy188I	TCNGA	6 cut(s)	72, 404, 547, 568, 703, 820
Hpy188III	TCNNGA	6 cut(s)	48, 483, 582, 719, 786, 1049
HpyAV	CCTTC	5 cut(s)	421, 671, 910, 998, 1095
HpyCH4III	ACNGT	4 cut(s)	265, 766, 1045, 1073
HpyCH4IV	ACGT	1 cut(s)	1107
HpyCH4V	TGCA	8 cut(s)	13, 299, 326, 617, 884, 893, 947, 1097
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 195, 397, 890
HpyF3I	CTNAG	5 cut(s)	190, 234, 394, 544, 638
HpySE526I	ACGT	1 cut(s)	1107
Hsp92I	GRCGYC	1 cut(s)	1107
Kzo9I	GATC	6 cut(s)	105, 371, 549, 953, 957, 1009
LmnI	GCTCC	2 cut(s)	721, 812
Lsp1109I	GCAGC	2 cut(s)	603, 868
LweI	GCATC	3 cut(s)	207, 790, 824
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	1107
MaeIII	GTNAC	2 cut(s)	15, 620
MalI	GATC	6 cut(s)	107, 373, 551, 955, 959, 1011
MboI	GATC	6 cut(s)	105, 371, 549, 953, 957, 1009
MboII	GAAGA	7 cut(s)	169, 172, 175, 406, 619, 704, 722
MfeI	CAATTG	3 cut(s)	741, 867, 948
MflI	RGATCY	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	6 cut(s)	444, 478, 741, 867, 948, 1034
MlyI	GAGTC	2 cut(s)	690, 815
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	635, 664, 667, 700, 706
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	6 cut(s)	96, 278, 329, 512, 761, 1120
MslI	CAYNNNNRTG	3 cut(s)	836, 894, 978
MspA1I	CMGCKG	2 cut(s)	524, 594
MspR9I	CCNGG	1 cut(s)	809
MunI	CAATTG	3 cut(s)	741, 867, 948
MvaI	CCWGG	1 cut(s)	809
MwoI	GCNNNNNNNGC	4 cut(s)	29, 195, 397, 890
NdeI	CATATG	2 cut(s)	54, 613
NdeII	GATC	6 cut(s)	105, 371, 549, 953, 957, 1009
NlaIV	GGNNCC	1 cut(s)	717
NmuCI	GTSAC	1 cut(s)	15
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	3 cut(s)	391, 835, 893
PaeI	GCATGC	1 cut(s)	893
PfeI	GAWTC	3 cut(s)	4, 426, 698
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	469, 593, 883
PleI	GAGTC	2 cut(s)	689, 815
PpsI	GAGTC	2 cut(s)	689, 815
PsiI	TTATAA	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	807
PspGI	CCWGG	1 cut(s)	807
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	2 cut(s)	128, 257
PstI	CTGCAG	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	549
PvuII	CAGCTG	2 cut(s)	524, 594
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	3 cut(s)	836, 894, 978
SaqAI	TTAA	6 cut(s)	96, 278, 329, 512, 761, 1120
SatI	GCNGC	3 cut(s)	468, 592, 882
Sau3AI	GATC	6 cut(s)	105, 371, 549, 953, 957, 1009
Sau96I	GGNCC	2 cut(s)	128, 257
SchI	GAGTC	2 cut(s)	690, 815
ScrFI	CCNGG	1 cut(s)	809
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	9 cut(s)	191, 208, 453, 526, 596, 627, 795, 927, 1110
SfaNI	GCATC	3 cut(s)	207, 790, 824
SfcI	CTRYAG	1 cut(s)	882
SinI	GGWCC	2 cut(s)	128, 257
SmiMI	CAYNNNNRTG	3 cut(s)	836, 894, 978
SphI	GCATGC	1 cut(s)	893
Sse9I	AATT	6 cut(s)	444, 478, 741, 867, 948, 1034
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	807
TaaI	ACNGT	4 cut(s)	265, 766, 1045, 1073
TaiI	ACGT	1 cut(s)	1110
TaqI	TCGA	2 cut(s)	956, 1048
TasI	AATT	6 cut(s)	444, 478, 741, 867, 948, 1034
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	3 cut(s)	4, 426, 698
Tru1I	TTAA	6 cut(s)	96, 278, 329, 512, 761, 1120
Tru9I	TTAA	6 cut(s)	96, 278, 329, 512, 761, 1120
TscAI	CASTG	3 cut(s)	424, 856, 1078
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	591, 881
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	5 cut(s)	422, 521, 705, 711, 929
TspGWI	ACGGA	3 cut(s)	317, 351, 766
TspRI	CASTG	3 cut(s)	424, 856, 1078
Van91I	CCANNNNNTGG	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	128, 257
XapI	RAATTY	3 cut(s)	444, 478, 1034
XceI	RCATGY	3 cut(s)	391, 835, 893
XspI	CTAG	1 cut(s)	605
ZraI	GACGTC	1 cut(s)	1108
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.