Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Forward (+)

72069270 .. 72075233

Gene Structure 5964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG501100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGGAGCCATAGGTGTAAAGGTAGACCTTGAATCAGATGAGGAGATCCCATTTAGCTCATCAGCAGCTACGAATAAAGTAGAGGCCTTGGATTTTGAGATGGTTCATTTGCCTTCGCGGCCAGTTATGCCAAACTCATGGATTGCAAGACATATAGGGATGAGAGCCGTGAGGAGTATTTATATTGTCTTATTAAAAGCAAAGATCAACATGTTGCTACCATTTGGTCCACTGGCAATTCTGCTACATTACGTTACTGGAAAGCATGGATGGGTCTTTTTCTTCAGCTTATTGGGCATCATACCTTTGGCAGAGCGTCTAGGATATGCGACTGAGCAACTCGCTTTCTACACAGGGCCAACAGTTGGGGGACTTTTAAATGCCACATTTGGAAATGCAACAGAAATGATCATATCGATTTATGCATTGAAGAATGGAATGATTAGGGTTGTTCAACAATCGTTGTTGGGGTCAATCTTGTCAAACATGCTCTTAGTTCTGGGTTGTGCCTTTTTCTCTGGTGGGATTGTTCATTACAATAAAGTTCAGGTGTTCAACAAGTCGGCTGCCGTCGTGAATTCTGGATTGTTGTTGATGGCTGTAATGGGGATAATGTTTCCAGCTGTGCTTCATTTTACACGCACAGAGGTGCATTTTGGGAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCTGTATAATGCTTGTGGCATATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCATCGTAGTCTTTATAACCCCATCAATGAGGAAGGAGACAATGATCAAGATTGTGATGAGGATGAGATTCCTGAGATAACTCACTGGGAAGCAATTGGCTGGCTTTCTGTTTTAACTGTGTGGGTGTCCATTTTGTCCGGATACCTTGTCGATGCCATCCAGGGAGCATCAGACTCTTTCAACATTCCTGTGGCATTTATCAGTGTCATTTTGCTCCCTATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCATGAAAGATAAGCTTGACATTACACTTGGAGTTGCGATTGGATCATCGACGCAAATATCCATGTTTGTGATTCCCTTCTGTGTGGTTGTTGGGTGGATCATGGGAGAGCCAATGGACTTGAATTTTCAACTCTTTGAGACTGCAACACTCTTTATCACCGTGCTTGTAGTGGCATTTATGTTGCAGGAAGGGACGTCAAACTACTTCAAAGGATTGATGCTTATCCTGTGTTATCTCATAGTTGCAGCCAGTTTTTTTGTACATGTAGATCCTTCAAATGGTGAGTTAAGCAATTTATTATACATCTTAAGTGAAAAAGAGAAAAGGATAGTAGAGTCATTCTTGTATGCATGGGCATATAGAGGTGTACAAACTATGGCTCTCCTTATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

467

Amino Acids

51.47

Weight (kDa)

5.37

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	91 - 246	3.4e-22	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	280 - 421	1.3e-23	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AatII	GACGTC	1 cut(s)	1205
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	118
AccIII	TCCGGA	1 cut(s)	881
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	4 cut(s)	40, 1057, 1112, 1271
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	2 cut(s)	577, 1129
AcuI	CTGAAG	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	1202
AfaI	GTAC	2 cut(s)	1269, 1377
AfiI	CCNNNNNNNGG	3 cut(s)	365, 968, 1286
AflII	CTTAAG	1 cut(s)	1315
AflIII	ACRYGT	2 cut(s)	210, 1270
AjnI	CCWGG	1 cut(s)	903
AjuI	GAANNNNNNNTTGG	2 cut(s)	653, 685
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	7 cut(s)	57, 68, 288, 623, 693, 720, 1021
AluI	AGCT	7 cut(s)	57, 68, 288, 623, 693, 720, 1021
Alw26I	GTCTC	2 cut(s)	774, 1139
AlwI	GGATC	4 cut(s)	40, 1057, 1112, 1271
Aor13HI	TCCGGA	1 cut(s)	881
AoxI	GGCC	3 cut(s)	84, 119, 356
ApeKI	GCWGC	4 cut(s)	65, 566, 977, 1253
ApoI	RAATTY	2 cut(s)	577, 1129
AspS9I	GGNCC	2 cut(s)	227, 356
AsuHPI	GGTGA	2 cut(s)	1156, 1301
AvaII	GGWCC	1 cut(s)	227
BbvI	GCAGC	4 cut(s)	77, 553, 964, 1265
BccI	CCATC	5 cut(s)	94, 264, 589, 773, 908
BceAI	ACGGC	2 cut(s)	152, 554
BciT130I	CCWGG	1 cut(s)	905
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	2 cut(s)	408, 787
BcoDI	GTCTC	2 cut(s)	774, 1139
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	978
BfrI	CTTAAG	1 cut(s)	1315
BfuI	GTATCC	1 cut(s)	878
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	5 cut(s)	66, 119, 567, 978, 1254
BlsI	GCNGC	5 cut(s)	67, 120, 568, 979, 1255
Bme1390I	CCNGG	1 cut(s)	905
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	227, 356
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	905
BmrI	ACTGGG	1 cut(s)	838
BmsI	GCATC	4 cut(s)	306, 886, 920, 1215
BmuI	ACTGGG	1 cut(s)	838
Bsa29I	ATCGAT	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	1229
BsaHI	GRCGYC	1 cut(s)	1202
BsaJI	CCNNGG	2 cut(s)	87, 904
BsaWI	WCCGGW	1 cut(s)	881
Bsc4I	CCNNNNNNNGG	3 cut(s)	365, 968, 1286
Bse1I	ACTGG	5 cut(s)	122, 237, 262, 833, 1257
Bse8I	GATNNNNATC	1 cut(s)	1229
BseAI	TCCGGA	1 cut(s)	881
BseBI	CCWGG	1 cut(s)	905
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	87, 904
BseGI	GGATG	4 cut(s)	165, 275, 811, 900
BseJI	GATNNNNATC	1 cut(s)	1229
BseLI	CCNNNNNNNGG	3 cut(s)	365, 968, 1286
BseMII	CTCAG	2 cut(s)	324, 807
BseNI	ACTGG	5 cut(s)	122, 237, 262, 833, 1257
BseRI	GAGGAG	2 cut(s)	56, 187
BseXI	GCAGC	4 cut(s)	77, 553, 964, 1265
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	3 cut(s)	86, 121, 358
BshVI	ATCGAT	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	882
BslFI	GGGAC	2 cut(s)	384, 1213
BslI	CCNNNNNNNGG	3 cut(s)	365, 968, 1286
BsmAI	GTCTC	2 cut(s)	774, 1139
BsmFI	GGGAC	2 cut(s)	384, 1213
BsnI	GGCC	3 cut(s)	86, 121, 358
Bsp13I	TCCGGA	1 cut(s)	881
Bsp1407I	TGTACA	2 cut(s)	1267, 1375
Bsp143I	GATC	7 cut(s)	45, 204, 408, 787, 1049, 1104, 1276
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	3 cut(s)	86, 121, 358
BspCNI	CTCAG	2 cut(s)	325, 808
BspDI	ATCGAT	1 cut(s)	416
BspEI	TCCGGA	1 cut(s)	881
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	982
BspPI	GGATC	4 cut(s)	40, 1057, 1112, 1271
BspTI	CTTAAG	1 cut(s)	1315
BsrGI	TGTACA	2 cut(s)	1267, 1375
BsrI	ACTGG	5 cut(s)	122, 237, 262, 833, 1257
BssECI	CCNNGG	2 cut(s)	87, 904
BssMI	GATC	7 cut(s)	45, 204, 408, 787, 1049, 1104, 1276
BssNI	GRCGYC	1 cut(s)	1202
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	905
Bst4CI	ACNGT	3 cut(s)	364, 862, 1168
BstACI	GRCGYC	1 cut(s)	1202
BstAFI	CTTAAG	1 cut(s)	1315
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstAUI	TGTACA	2 cut(s)	1267, 1375
BstC8I	GCNNGC	3 cut(s)	718, 845, 987
BstDEI	CTNAG	4 cut(s)	333, 493, 737, 816
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstF5I	GGATG	4 cut(s)	165, 275, 811, 900
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	7 cut(s)	48, 207, 411, 790, 1052, 1107, 1279
BstMAI	GTCTC	2 cut(s)	774, 1139
BstMBI	GATC	7 cut(s)	45, 204, 408, 787, 1049, 1104, 1276
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 127, 294, 986
BstNI	CCWGG	1 cut(s)	905
BstNSI	RCATGY	4 cut(s)	214, 490, 989, 1274
BstSCI	CCNGG	1 cut(s)	903
BstSFI	CTRYAG	1 cut(s)	978
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	4 cut(s)	77, 553, 964, 1265
BstX2I	RGATCY	2 cut(s)	45, 1276
BstXI	CCANNNNNNTGG	1 cut(s)	138
BstYI	RGATCY	2 cut(s)	45, 1276
Bsu15I	ATCGAT	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	3 cut(s)	86, 121, 358
BsuTUI	ATCGAT	1 cut(s)	416
BtsCI	GGATG	4 cut(s)	165, 275, 811, 900
BtsIMutI	CAGTG	3 cut(s)	230, 826, 952
Cac8I	GCNNGC	3 cut(s)	718, 845, 987
Cfr13I	GGNCC	2 cut(s)	227, 356
ClaI	ATCGAT	1 cut(s)	416
CseI	GACGC	2 cut(s)	305, 1066
Csp6I	GTAC	2 cut(s)	1268, 1376
CviQI	GTAC	2 cut(s)	1268, 1376
DdeI	CTNAG	4 cut(s)	333, 493, 737, 816
DpnI	GATC	7 cut(s)	47, 206, 410, 789, 1051, 1106, 1278
DpnII	GATC	7 cut(s)	45, 204, 408, 787, 1049, 1104, 1276
DraI	TTTAAA	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	903
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	2 cut(s)	427, 1360
ErhI	CCWWGG	1 cut(s)	87
FalI	AAGNNNNNCTT	2 cut(s)	1005, 1037
FaqI	GGGAC	2 cut(s)	384, 1213
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	2 cut(s)	408, 787
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	5 cut(s)	66, 119, 567, 978, 1254
FokI	GGATG	4 cut(s)	172, 282, 818, 887
Fsp4HI	GCNGC	5 cut(s)	66, 119, 567, 978, 1254
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	5 cut(s)	66, 119, 567, 978, 1254
HaeIII	GGCC	3 cut(s)	86, 121, 358
HapII	CCGG	1 cut(s)	882
HgaI	GACGC	2 cut(s)	305, 1066
Hin1I	GRCGYC	1 cut(s)	1202
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	5 cut(s)	32, 811, 917, 1078, 1343
HpaII	CCGG	1 cut(s)	882
HphI	GGTGA	2 cut(s)	1156, 1301
Hpy166II	GTNNAC	3 cut(s)	25, 230, 1376
Hpy188I	TCNGA	3 cut(s)	37, 667, 916
Hpy188III	TCNNGA	6 cut(s)	574, 582, 681, 791, 815, 882
Hpy8I	GTNNAC	3 cut(s)	25, 230, 1376
Hpy99I	CGWCG	2 cut(s)	575, 1060
HpyAV	CCTTC	5 cut(s)	123, 770, 1093, 1190, 1290
HpyCH4III	ACNGT	3 cut(s)	364, 862, 1168
HpyCH4IV	ACGT	2 cut(s)	252, 1202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 127, 294, 986
HpyF3I	CTNAG	4 cut(s)	333, 493, 737, 816
HpySE526I	ACGT	2 cut(s)	252, 1202
Hsp92I	GRCGYC	1 cut(s)	1202
Kpn2I	TCCGGA	1 cut(s)	881
Ksp22I	TGATCA	2 cut(s)	408, 787
Kzo9I	GATC	7 cut(s)	45, 204, 408, 787, 1049, 1104, 1276
LmnI	GCTCC	3 cut(s)	5, 908, 963
Lsp1109I	GCAGC	4 cut(s)	77, 553, 964, 1265
LweI	GCATC	4 cut(s)	306, 886, 920, 1215
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	252, 1202
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	7 cut(s)	47, 206, 410, 789, 1051, 1106, 1278
MboI	GATC	7 cut(s)	45, 204, 408, 787, 1049, 1104, 1276
MboII	GAAGA	2 cut(s)	274, 442
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	2 cut(s)	45, 1276
MluCI	AATT	5 cut(s)	237, 577, 837, 1129, 1300
MlyI	GAGTC	2 cut(s)	911, 1352
MnlI	CCTC	7 cut(s)	34, 76, 165, 640, 766, 796, 1364
Mph1103I	ATGCAT	2 cut(s)	427, 1360
MroI	TCCGGA	1 cut(s)	881
MseI	TTAA	6 cut(s)	194, 377, 857, 1295, 1316, 1402
MslI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
MspA1I	CMGCKG	1 cut(s)	623
MspCI	CTTAAG	1 cut(s)	1315
MspI	CCGG	1 cut(s)	882
MspR9I	CCNGG	1 cut(s)	905
MunI	CAATTG	1 cut(s)	837
MvaI	CCWGG	1 cut(s)	905
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	118, 127, 294, 986
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	7 cut(s)	45, 204, 408, 787, 1049, 1104, 1276
NlaIV	GGNNCC	1 cut(s)	7
NsiI	ATGCAT	2 cut(s)	427, 1360
NspI	RCATGY	4 cut(s)	214, 490, 989, 1274
OliI	CACNNNNGTG	1 cut(s)	647
PaeI	GCATGC	1 cut(s)	989
PceI	AGGCCT	1 cut(s)	86
PciI	ACATGT	2 cut(s)	210, 1270
PfeI	GAWTC	3 cut(s)	32, 811, 1078
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	5 cut(s)	67, 120, 568, 979, 1255
PleI	GAGTC	2 cut(s)	911, 1351
PpsI	GAGTC	2 cut(s)	911, 1351
PscI	ACATGT	2 cut(s)	210, 1270
PsiI	TTATAA	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	903
PspGI	CCWGG	1 cut(s)	903
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	227, 356
PstI	CTGCAG	1 cut(s)	982
PsuI	RGATCY	2 cut(s)	45, 1276
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	2 cut(s)	1269, 1377
RsaNI	GTAC	2 cut(s)	1268, 1376
RseI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
SaqAI	TTAA	6 cut(s)	194, 377, 857, 1295, 1316, 1402
SatI	GCNGC	5 cut(s)	66, 119, 567, 978, 1254
Sau3AI	GATC	7 cut(s)	45, 204, 408, 787, 1049, 1104, 1276
Sau96I	GGNCC	2 cut(s)	227, 356
SchI	GAGTC	2 cut(s)	911, 1352
ScrFI	CCNGG	1 cut(s)	905
SfaNI	GCATC	4 cut(s)	306, 886, 920, 1215
SfcI	CTRYAG	1 cut(s)	978
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
SmlI	CTYRAG	1 cut(s)	1315
SmoI	CTYRAG	1 cut(s)	1315
SphI	GCATGC	1 cut(s)	989
Sse9I	AATT	5 cut(s)	237, 577, 837, 1129, 1300
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	903
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	364, 862, 1168
TaiI	ACGT	2 cut(s)	255, 1205
TaqI	TCGA	3 cut(s)	416, 894, 1055
TasI	AATT	5 cut(s)	237, 577, 837, 1129, 1300
TatI	WGTACW	2 cut(s)	1267, 1375
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	3 cut(s)	32, 811, 1078
Tru1I	TTAA	6 cut(s)	194, 377, 857, 1295, 1316, 1402
Tru9I	TTAA	6 cut(s)	194, 377, 857, 1295, 1316, 1402
TscAI	CASTG	3 cut(s)	237, 833, 952
TseI	GCWGC	4 cut(s)	65, 566, 977, 1253
TspDTI	ATGAA	4 cut(s)	95, 521, 620, 1025
TspRI	CASTG	3 cut(s)	237, 833, 952
Van91I	CCANNNNNTGG	1 cut(s)	365
Vha464I	CTTAAG	1 cut(s)	1315
VpaK11BI	GGWCC	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	2 cut(s)	577, 1129
XceI	RCATGY	4 cut(s)	214, 490, 989, 1274
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	320
ZraI	GACGTC	1 cut(s)	1203
Zsp2I	ATGCAT	2 cut(s)	427, 1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.