MD09G1157100.v1.1

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
12520620 .. 12526155
5536 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1157100.v1.1.491

Sequence Viewer

Length: 1542 bp
ATGTATAATAAGTCTCGTTTTGTCTTAAAATCTTTTGCCGGGTTCTGGCATCCAACGCCATCTCCTCCTCCACTCTTGACTCTATCTCTCTTCTGCTTTTCACAGACCCAAAGTGCTGGGCTCCATTTTCAGACAAACGTTCTCTCTCTCTCTCTCTCTCTGAAGGAGGCAAAGACTGAGGAGAAGTTGGTCCATTTGCTCAAATCCAATCCATTTTTGCTTCTGGGTTTGAGTGGGTTGATGGTTTCCATAGATGGAAAGACAGACCTTGAGTCTGATGAAGAAATCCCTTTTAGCTCATCAGCAGCCACCAGTAAAGTAGAGGCCTTGGACTTTGAGATGATTCATTTGCGGTCACGGGCAGATTTGGCGAACTCATGGGTTTCAACACATATGTGGATAAGAGTTCCAAGGAGTATTTATATAGTCTTATTTAAAGCAAAGATCAATGTGTTGCTACCCCTTGGTCCGTTGGCAATCTTGCTACATTATATTACTGGAAAGCATGGATGGGTCTTCTTCTTCAGCTTAGTGGGCATCGTACCTTTAGCAGAGCGTATAGGATATGTGACTGAGCAACTTGCTTTTTACACCGGACCAACAGTTGGGGGTCTGTTAAATGCCACATTTGGAAATGCAACGGAAATGATTATATCAATATATGCATTAAAGAACGGAATGATAAGGGTTGTTCAGCAGTCTTTATTGGGATCAATCTTGTCTAACATGCTCTTAGTGCTCGGATGTGCCTTCTTCACTGGTGGAATCATTCATTACCAAAAAATTCAGGTTTTCAACAAGTCTGCCGCCCTTGTGAATTCCGGATTGCTGTTGATGGCTGTCATGGGGTTAATGTTTCCAGCTGTGCTTCATTTTACGCACTCAGAGATCCACTTTGGGAAGTCAGAGTTGTCTCTTTCAAGATTTAGCAGCTGTGTAATGCTAGTGGCATATGCAAGTTACCTCTTCTTTCAACTTAGAAGTCATCGTAATCTTTATAATCCCATTGAGGAGGAAGGAATCAGGGATGAAGATGAATCCGATGAAGAAGAGGCTCCCGAGATAACTCATTGGGAAGCAATTGGCTGGCTTGCTGTTTTAACCGTCTGGGTGTCCGTTTTGTCTGGATACCTTGTTGATGCTATCCAGGGAGCATCTGACTCATTCAACATGCCTGTGGCATTTATCAGTGTTATACTACTACCAATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCATGAAGGACAAGCTTGATATCACACTTGGAGTTGCAATTGGATCATCTACACAAATATCCATGTTTGTGATACCCTTCTGCGTAGTTGTGGGGTGGATCATGGGACTGCCAATGGACTTGAATTTTCAACTGTTCGAAACTGCCACACTTTTTATTACAGTGTTAGTCGTGGCATTTATGTTGCAGGATGGGACGTCAAACTATTTTAAAGGCTTGATGCTTATTCTGTGCTATCTCATAGTTGCAGCCAGTTTTTTTGTGCACGTCGATCCTTCAGAAGATGGTAATTAA

Protein Analysis

514

Amino Acids

56.6

Weight (kDa)

5.58

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 171 - 326 4e-22 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 360 - 502 4e-23 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AatII GACGTC 1 cut(s) 1448
AccB7I CCANNNNNTGG 1 cut(s) 605
AccIII TCCGGA 1 cut(s) 821
AciI CCGC 2 cut(s) 352, 807
AclI AACGTT 1 cut(s) 138
AclWI GGATC 5 cut(s) 718, 883, 1300, 1355, 1514
AcsI RAATTY 3 cut(s) 783, 817, 1372
AcuI CTGAAG 3 cut(s) 182, 508, 1509
AcyI GRCGYC 1 cut(s) 1445
AfaI GTAC 1 cut(s) 543
AfiI CCNNNNNNNGG 3 cut(s) 45, 605, 1211
AgsI TTSAA 7 cut(s) 387, 796, 921, 974, 1168, 1372, 1379
AhdI GACNNNNNGTC 1 cut(s) 271
AjiI CACGTC 1 cut(s) 1516
AjnI CCWGG 1 cut(s) 1146
AleI CACNNNNGTG 1 cut(s) 394
AluBI AGCT 5 cut(s) 297, 528, 863, 933, 1264
AluI AGCT 5 cut(s) 297, 528, 863, 933, 1264
Alw21I GWGCWC 2 cut(s) 741, 1515
Alw26I GTCTC 2 cut(s) 18, 918
Alw44I GTGCAC 1 cut(s) 1511
AlwI GGATC 5 cut(s) 718, 883, 1300, 1355, 1514
Ama87I CYCGRG 1 cut(s) 1058
Aor13HI TCCGGA 1 cut(s) 821
AoxI GGCC 1 cut(s) 324
ApaLI GTGCAC 1 cut(s) 1511
ApeKI GCWGC 4 cut(s) 305, 930, 1220, 1496
ApoI RAATTY 3 cut(s) 783, 817, 1372
AspS9I GGNCC 3 cut(s) 190, 467, 596
AsuC2I CCSGG 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 1386
AvaI CYCGRG 1 cut(s) 1058
AvaII GGWCC 3 cut(s) 190, 467, 596
BaeGI GKGCMC 1 cut(s) 1515
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 508
Bbv12I GWGCWC 2 cut(s) 741, 1515
BbvI GCAGC 4 cut(s) 317, 942, 1207, 1508
BccI CCATC 7 cut(s) 67, 235, 248, 504, 829, 1433, 1526
BciT130I CCWGG 1 cut(s) 1148
BciVI GTATCC 1 cut(s) 1121
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 2 cut(s) 18, 918
BfaI CTAG 1 cut(s) 944
BfmI CTRYAG 1 cut(s) 1221
BfuI GTATCC 1 cut(s) 1121
BisI GCNGC 5 cut(s) 306, 807, 931, 1221, 1497
BlsI GCNGC 5 cut(s) 307, 808, 932, 1222, 1498
Bme1390I CCNGG 2 cut(s) 40, 1148
Bme18I GGWCC 3 cut(s) 190, 467, 596
BmeRI GACNNNNNGTC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 1058
BmgBI CACGTC 1 cut(s) 1516
BmgT120I GGNCC 3 cut(s) 190, 467, 596
BmiI GGNNCC 2 cut(s) 122, 1056
BmrFI CCNGG 2 cut(s) 40, 1148
BmsI GCATC 5 cut(s) 58, 546, 1129, 1163, 1458
BpiI GAAGAC 1 cut(s) 508
Bpu14I TTCGAA 1 cut(s) 1386
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 1445
BsaJI CCNNGG 4 cut(s) 327, 410, 463, 1147
BsaWI WCCGGW 2 cut(s) 593, 821
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 605, 1211
Bse1I ACTGG 4 cut(s) 312, 502, 763, 1500
BseAI TCCGGA 1 cut(s) 821
BseBI CCWGG 1 cut(s) 1148
BseDI CCNNGG 4 cut(s) 327, 410, 463, 1147
BseGI GGATG 5 cut(s) 49, 515, 749, 1033, 1444
BseLI CCNNNNNNNGG 3 cut(s) 45, 605, 1211
BseMII CTCAG 3 cut(s) 168, 564, 897
BseNI ACTGG 4 cut(s) 312, 502, 763, 1500
BseRI GAGGAG 4 cut(s) 54, 57, 194, 1025
BseSI GKGCMC 1 cut(s) 1515
BseXI GCAGC 4 cut(s) 317, 942, 1207, 1508
BseYI CCCAGC 1 cut(s) 116
BshFI GGCC 1 cut(s) 326
BsiHKAI GWGCWC 2 cut(s) 741, 1515
BsiHKCI CYCGRG 1 cut(s) 1058
BsiSI CCGG 3 cut(s) 39, 594, 822
BslFI GGGAC 2 cut(s) 1368, 1456
BslI CCNNNNNNNGG 3 cut(s) 45, 605, 1211
BsmAI GTCTC 2 cut(s) 18, 918
BsmFI GGGAC 2 cut(s) 1368, 1456
BsnI GGCC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 1058
Bsp119I TTCGAA 1 cut(s) 1386
Bsp1286I GDGCHC 3 cut(s) 123, 741, 1515
Bsp13I TCCGGA 1 cut(s) 821
Bsp143I GATC 6 cut(s) 444, 710, 888, 1292, 1347, 1519
BspACI CCGC 2 cut(s) 352, 807
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 3 cut(s) 169, 565, 896
BspEI TCCGGA 1 cut(s) 821
BspLI GGNNCC 2 cut(s) 122, 1056
BspMAI CTGCAG 1 cut(s) 1225
BspPI GGATC 5 cut(s) 718, 883, 1300, 1355, 1514
BspT104I TTCGAA 1 cut(s) 1386
BsrI ACTGG 4 cut(s) 312, 502, 763, 1500
BssECI CCNNGG 4 cut(s) 327, 410, 463, 1147
BssMI GATC 6 cut(s) 444, 710, 888, 1292, 1347, 1519
BssNI GRCGYC 1 cut(s) 1445
BssT1I CCWWGG 3 cut(s) 327, 410, 463
Bst2UI CCWGG 1 cut(s) 1148
Bst4CI ACNGT 4 cut(s) 604, 1105, 1383, 1411
Bst6I CTCTTC 3 cut(s) 95, 971, 1044
BstACI GRCGYC 1 cut(s) 1445
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstBI TTCGAA 1 cut(s) 1386
BstC8I GCNNGC 3 cut(s) 1088, 1092, 1230
BstDEI CTNAG 6 cut(s) 177, 529, 573, 733, 883, 977
BstF5I GGATG 5 cut(s) 49, 515, 749, 1033, 1444
BstKTI GATC 6 cut(s) 447, 713, 891, 1295, 1350, 1522
BstMAI GTCTC 2 cut(s) 18, 918
BstMBI GATC 6 cut(s) 444, 710, 888, 1292, 1347, 1519
BstMWI GCNNNNNNNGC 5 cut(s) 55, 368, 534, 736, 1229
BstNI CCWGG 1 cut(s) 1148
BstNSI RCATGY 3 cut(s) 730, 1174, 1232
BstSCI CCNGG 2 cut(s) 38, 1146
BstSFI CTRYAG 1 cut(s) 1221
BstSLI GKGCMC 1 cut(s) 1515
BstV1I GCAGC 4 cut(s) 317, 942, 1207, 1508
BstV2I GAAGAC 1 cut(s) 508
BstX2I RGATCY 1 cut(s) 888
BstXI CCANNNNNNTGG 1 cut(s) 116
BstYI RGATCY 1 cut(s) 888
BsuI GTATCC 1 cut(s) 1121
BsuRI GGCC 1 cut(s) 326
BtrI CACGTC 1 cut(s) 1516
BtsCI GGATG 5 cut(s) 49, 515, 749, 1033, 1444
BtsIMutI CAGTG 3 cut(s) 756, 1195, 1416
Cac8I GCNNGC 3 cut(s) 1088, 1092, 1230
Cfr13I GGNCC 3 cut(s) 190, 467, 596
Csp6I GTAC 1 cut(s) 542
CviQI GTAC 1 cut(s) 542
DdeI CTNAG 6 cut(s) 177, 529, 573, 733, 883, 977
DpnI GATC 6 cut(s) 446, 712, 890, 1294, 1349, 1521
DpnII GATC 6 cut(s) 444, 710, 888, 1292, 1347, 1519
DraI TTTAAA 2 cut(s) 436, 1459
DriI GACNNNNNGTC 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 95, 971, 1044
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 3 cut(s) 95, 971, 1044
Eco130I CCWWGG 3 cut(s) 327, 410, 463
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 123
Eco32I GATATC 1 cut(s) 1270
Eco47I GGWCC 3 cut(s) 190, 467, 596
Eco57I CTGAAG 3 cut(s) 182, 508, 1509
Eco88I CYCGRG 1 cut(s) 1058
EcoRI GAATTC 1 cut(s) 817
EcoRII CCWGG 1 cut(s) 1146
EcoRV GATATC 1 cut(s) 1270
EcoT14I CCWWGG 3 cut(s) 327, 410, 463
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 3 cut(s) 327, 410, 463
FaqI GGGAC 2 cut(s) 1368, 1456
FauNDI CATATG 2 cut(s) 393, 952
Fnu4HI GCNGC 5 cut(s) 306, 807, 931, 1221, 1497
FokI GGATG 5 cut(s) 36, 522, 756, 1040, 1451
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 5 cut(s) 306, 807, 931, 1221, 1497
FspBI CTAG 1 cut(s) 944
GluI GCNGC 5 cut(s) 306, 807, 931, 1221, 1497
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 326
HapII CCGG 3 cut(s) 39, 594, 822
Hin1I GRCGYC 1 cut(s) 1445
HindIII AAGCTT 1 cut(s) 1262
HinfI GANTC 7 cut(s) 79, 272, 343, 765, 1020, 1037, 1160
HpaII CCGG 3 cut(s) 39, 594, 822
Hpy166II GTNNAC 1 cut(s) 1513
Hpy188I TCNGA 9 cut(s) 132, 162, 277, 743, 886, 907, 1042, 1159, 1528
Hpy188III TCNNGA 5 cut(s) 76, 822, 921, 1058, 1125
Hpy8I GTNNAC 1 cut(s) 1513
Hpy99I CGWCG 1 cut(s) 1520
HpyAV CCTTC 6 cut(s) 157, 760, 1010, 1249, 1336, 1533
HpyCH4III ACNGT 4 cut(s) 604, 1105, 1383, 1411
HpyCH4IV ACGT 3 cut(s) 138, 1445, 1515
HpyCH4V TGCA 9 cut(s) 638, 665, 956, 1223, 1232, 1286, 1435, 1496, 1513
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 368, 534, 736, 1229
HpyF3I CTNAG 6 cut(s) 177, 529, 573, 733, 883, 977
HpySE526I ACGT 3 cut(s) 138, 1445, 1515
Hsp92I GRCGYC 1 cut(s) 1445
Kpn2I TCCGGA 1 cut(s) 821
Kzo9I GATC 6 cut(s) 444, 710, 888, 1292, 1347, 1519
LmnI GCTCC 3 cut(s) 126, 1060, 1151
Lsp1109I GCAGC 4 cut(s) 317, 942, 1207, 1508
LweI GCATC 5 cut(s) 58, 546, 1129, 1163, 1458
MaeI CTAG 1 cut(s) 944
MaeII ACGT 3 cut(s) 138, 1445, 1515
MaeIII GTNAC 3 cut(s) 354, 568, 959
MalI GATC 6 cut(s) 446, 712, 890, 1294, 1349, 1521
MboI GATC 6 cut(s) 444, 710, 888, 1292, 1347, 1519
MfeI CAATTG 3 cut(s) 1080, 1206, 1287
MflI RGATCY 1 cut(s) 888
MhlI GDGCHC 3 cut(s) 123, 741, 1515
MluCI AATT 7 cut(s) 783, 817, 1080, 1206, 1287, 1372, 1537
MlyI GAGTC 3 cut(s) 73, 281, 1154
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 9 cut(s) 75, 78, 160, 172, 316, 974, 1003, 1006, 1045
Mph1103I ATGCAT 1 cut(s) 667
MroI TCCGGA 1 cut(s) 821
MseI TTAA 8 cut(s) 26, 435, 617, 668, 851, 1100, 1458, 1540
MslI CAYNNNNRTG 4 cut(s) 394, 1175, 1233, 1316
MspA1I CMGCKG 2 cut(s) 863, 933
MspI CCGG 3 cut(s) 39, 594, 822
MspR9I CCNGG 2 cut(s) 40, 1148
MunI CAATTG 3 cut(s) 1080, 1206, 1287
MvaI CCWGG 1 cut(s) 1148
MwoI GCNNNNNNNGC 5 cut(s) 55, 368, 534, 736, 1229
NciI CCSGG 1 cut(s) 40
NdeI CATATG 2 cut(s) 393, 952
NdeII GATC 6 cut(s) 444, 710, 888, 1292, 1347, 1519
NlaIV GGNNCC 2 cut(s) 122, 1056
NmuCI GTSAC 2 cut(s) 354, 568
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 3 cut(s) 730, 1174, 1232
NspV TTCGAA 1 cut(s) 1386
OliI CACNNNNGTG 1 cut(s) 394
PaeI GCATGC 1 cut(s) 1232
PceI AGGCCT 1 cut(s) 326
PfeI GAWTC 4 cut(s) 343, 765, 1020, 1037
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 5 cut(s) 307, 808, 932, 1222, 1498
PleI GAGTC 3 cut(s) 73, 280, 1154
PpsI GAGTC 3 cut(s) 73, 280, 1154
PsiI TTATAA 1 cut(s) 999
Psp1406I AACGTT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 1146
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 1 cut(s) 1146
PspN4I GGNNCC 2 cut(s) 122, 1056
PspPI GGNCC 3 cut(s) 190, 467, 596
PstI CTGCAG 1 cut(s) 1225
PsuI RGATCY 1 cut(s) 888
PvuII CAGCTG 2 cut(s) 863, 933
RsaI GTAC 1 cut(s) 543
RsaNI GTAC 1 cut(s) 542
RseI CAYNNNNRTG 4 cut(s) 394, 1175, 1233, 1316
SaqAI TTAA 8 cut(s) 26, 435, 617, 668, 851, 1100, 1458, 1540
SatI GCNGC 5 cut(s) 306, 807, 931, 1221, 1497
Sau3AI GATC 6 cut(s) 444, 710, 888, 1292, 1347, 1519
Sau96I GGNCC 3 cut(s) 190, 467, 596
SchI GAGTC 3 cut(s) 73, 281, 1154
ScrFI CCNGG 2 cut(s) 40, 1148
SduI GDGCHC 3 cut(s) 123, 741, 1515
SfaNI GCATC 5 cut(s) 58, 546, 1129, 1163, 1458
SfcI CTRYAG 1 cut(s) 1221
SfuI TTCGAA 1 cut(s) 1386
SinI GGWCC 3 cut(s) 190, 467, 596
SmiMI CAYNNNNRTG 4 cut(s) 394, 1175, 1233, 1316
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SphI GCATGC 1 cut(s) 1232
Sse9I AATT 7 cut(s) 783, 817, 1080, 1206, 1287, 1372, 1537
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 2 cut(s) 352, 807
SspMI CTAG 1 cut(s) 944
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 2 cut(s) 38, 1146
StyI CCWWGG 3 cut(s) 327, 410, 463
TaaI ACNGT 4 cut(s) 604, 1105, 1383, 1411
TaiI ACGT 3 cut(s) 141, 1448, 1518
TaqI TCGA 2 cut(s) 1386, 1518
TasI AATT 7 cut(s) 783, 817, 1080, 1206, 1287, 1372, 1537
TauI GCSGC 1 cut(s) 809
TfiI GAWTC 4 cut(s) 343, 765, 1020, 1037
Tru1I TTAA 8 cut(s) 26, 435, 617, 668, 851, 1100, 1458, 1540
Tru9I TTAA 8 cut(s) 26, 435, 617, 668, 851, 1100, 1458, 1540
TscAI CASTG 3 cut(s) 763, 1195, 1416
TseFI GTSAC 2 cut(s) 354, 568
TseI GCWGC 4 cut(s) 305, 930, 1220, 1496
Tsp45I GTSAC 2 cut(s) 354, 568
TspDTI ATGAA 8 cut(s) 294, 335, 761, 860, 1044, 1050, 1059, 1268
TspGWI ACGGA 4 cut(s) 459, 656, 690, 1105
TspRI CASTG 3 cut(s) 763, 1195, 1416
Van91I CCANNNNNTGG 1 cut(s) 605
VneI GTGCAC 1 cut(s) 1511
VpaK11BI GGWCC 3 cut(s) 190, 467, 596
XapI RAATTY 3 cut(s) 783, 817, 1372
XceI RCATGY 3 cut(s) 730, 1174, 1232
XspI CTAG 1 cut(s) 944
ZraI GACGTC 1 cut(s) 1446
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.