Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Forward (+)

65611799 .. 65616049

Gene Structure 4251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTTTAATTGGGATTATGCTTCCAACTGTGGTTCACTTTACACACTTAGAGGCGCATTTTGGGAAGTCGGAGTTATCCCTTTCAAGATTTAGTAGCAGTGTAATGCTAGTGGCATATGCAAGCTTCCTGTTCTTTAAATTTAGAAGTCAACATGATCGTTATAGTCCCATTCATGAGGATGAGGATGAGGAAGGAGTCCATGATCCAGATTCTTCTCCGGAAATAACTGCTAATGAAGCAATTGGCTGGCTTTCTATCTTCGCTCTGTGGGTGTCCATTTTGTCTTCATACCTTGTGGAGGCTATACTGGGAGCATCTGATTCTCTCACTATTCCTGTAGCATTTATCAGTGCCATCCTGCTCCCAGTTGTAGGAAATATATGGTCTATCATGTTTTCTATGAGAGAAAAACTTGTGAGACCGATCAAACTCGAAGTTGCTATTGGATTATCTACACGCACATCTATGTTTACACTAAGGACTCGAATTCATATTCTCAATATCCCCTTCTGTGTAGTTGTTGGGTGGATAATAGGAAAGCCTATGGACTTGAATTTTGAACTCTTTGAGACTGCTATACATATATTGGTTATGGCTGTGCTAGTAGTGCCATTTATGTTGCAGATCTGCTATGTCATGACTGAAAAGTCTGTGCACAGTGAACTGAACTTTGAGGTTTCTGATTACATAATCCAAGAGGAGCGTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

238

Amino Acids

26.78

Weight (kDa)

5.2

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	649
AccIII	TCCGGA	1 cut(s)	220
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	140, 489, 556
AfiI	CCNNNNNNNGG	2 cut(s)	301, 374
AgsI	TTSAA	3 cut(s)	87, 556, 563
AjuI	GAANNNNNNNTTGG	2 cut(s)	429, 461
AluBI	AGCT	1 cut(s)	126
AluI	AGCT	1 cut(s)	126
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	2 cut(s)	415, 566
Alw44I	GTGCAC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	220
ApaLI	GTGCAC	1 cut(s)	656
ApoI	RAATTY	3 cut(s)	140, 489, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	542, 574
AspLEI	GCGC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	660
BccI	CCATC	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	415, 566
BfaI	CTAG	2 cut(s)	110, 605
BfmI	CTRYAG	1 cut(s)	339
BglII	AGATCT	1 cut(s)	627
BmrI	ACTGGG	2 cut(s)	320, 362
BmsI	GCATC	1 cut(s)	326
BmuI	ACTGGG	2 cut(s)	320, 362
BpiI	GAAGAC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	415
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 374
Bse1I	ACTGG	2 cut(s)	315, 368
BseAI	TCCGGA	1 cut(s)	220
BseGI	GGATG	3 cut(s)	187, 193, 357
BseLI	CCNNNNNNNGG	2 cut(s)	301, 374
BseNI	ACTGG	2 cut(s)	315, 368
BseSI	GKGCMC	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	301, 374
BsmAI	GTCTC	2 cut(s)	415, 566
BsmFI	GGGAC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	4 cut(s)	157, 205, 426, 627
BspEI	TCCGGA	1 cut(s)	220
BspHI	TCATGA	2 cut(s)	175, 639
BspPI	GGATC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	315, 368
BssMI	GATC	4 cut(s)	157, 205, 426, 627
Bst4CI	ACNGT	2 cut(s)	31, 662
BstC8I	GCNNGC	2 cut(s)	124, 251
BstDEI	CTNAG	2 cut(s)	49, 479
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstF5I	GGATG	3 cut(s)	187, 193, 357
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	4 cut(s)	160, 208, 429, 630
BstMAI	GTCTC	2 cut(s)	415, 566
BstMBI	GATC	4 cut(s)	157, 205, 426, 627
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 610
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	660
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
BtsCI	GGATG	3 cut(s)	187, 193, 357
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	106, 358, 667
Cac8I	GCNNGC	2 cut(s)	124, 251
CciI	TCATGA	2 cut(s)	175, 639
CfoI	GCGC	1 cut(s)	58
CviAII	CATG	5 cut(s)	155, 176, 203, 394, 640
CviJI	RGCY	7 cut(s)	5, 126, 249, 253, 305, 544, 599
CviKI_1	RGCY	7 cut(s)	5, 126, 249, 253, 305, 544, 599
DdeI	CTNAG	2 cut(s)	49, 479
DpnI	GATC	4 cut(s)	159, 207, 428, 629
DpnII	GATC	4 cut(s)	157, 205, 426, 627
DraI	TTTAAA	1 cut(s)	139
DrdI	GACNNNNNNGTC	1 cut(s)	649
DseDI	GACNNNNNNGTC	1 cut(s)	649
Eco31I	GGTCTC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	489
FaeI	CATG	5 cut(s)	158, 179, 206, 397, 643
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	5 cut(s)	154, 175, 202, 393, 639
FauNDI	CATATG	1 cut(s)	118
FokI	GGATG	3 cut(s)	194, 200, 344
FspBI	CTAG	2 cut(s)	110, 605
GlaI	GCGC	1 cut(s)	57
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	5 cut(s)	158, 179, 206, 397, 643
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	4 cut(s)	198, 212, 323, 484
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	5 cut(s)	37, 152, 474, 658, 665
Hpy188I	TCNGA	3 cut(s)	73, 322, 685
Hpy188III	TCNNGA	5 cut(s)	87, 176, 209, 221, 640
Hpy8I	GTNNAC	5 cut(s)	37, 152, 474, 658, 665
HpyAV	CCTTC	2 cut(s)	188, 520
HpyCH4III	ACNGT	2 cut(s)	31, 662
HpyCH4V	TGCA	3 cut(s)	122, 625, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 610
HpyF3I	CTNAG	2 cut(s)	49, 479
Hsp92II	CATG	5 cut(s)	158, 179, 206, 397, 643
HspAI	GCGC	1 cut(s)	56
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	4 cut(s)	157, 205, 426, 627
LmnI	GCTCC	3 cut(s)	314, 369, 703
LpnPI	CCDG	8 cut(s)	143, 222, 234, 235, 296, 351, 374, 381
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	2 cut(s)	110, 605
MalI	GATC	4 cut(s)	159, 207, 428, 629
MboI	GATC	4 cut(s)	157, 205, 426, 627
MboII	GAAGA	3 cut(s)	207, 253, 279
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	5 cut(s)	9, 140, 243, 489, 556
MlyI	GAGTC	2 cut(s)	207, 478
MmeI	TCCRAC	2 cut(s)	50, 51
MnlI	CCTC	7 cut(s)	46, 172, 178, 184, 295, 670, 694
MroI	TCCGGA	1 cut(s)	220
MseI	TTAA	2 cut(s)	8, 138
MslI	CAYNNNNRTG	2 cut(s)	180, 467
MspI	CCGG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	239, 610
NdeI	CATATG	1 cut(s)	118
NdeII	GATC	4 cut(s)	157, 205, 426, 627
NlaIII	CATG	5 cut(s)	158, 179, 206, 397, 643
PagI	TCATGA	2 cut(s)	175, 639
PfeI	GAWTC	2 cut(s)	212, 323
PleI	GAGTC	2 cut(s)	206, 478
PpsI	GAGTC	2 cut(s)	206, 478
PsuI	RGATCY	1 cut(s)	627
RseI	CAYNNNNRTG	2 cut(s)	180, 467
SaqAI	TTAA	2 cut(s)	8, 138
Sau3AI	GATC	4 cut(s)	157, 205, 426, 627
SchI	GAGTC	2 cut(s)	207, 478
SduI	GDGCHC	1 cut(s)	660
SetI	ASST	3 cut(s)	128, 297, 681
SfaNI	GCATC	1 cut(s)	326
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	2 cut(s)	180, 467
Sse9I	AATT	5 cut(s)	9, 140, 243, 489, 556
SspMI	CTAG	2 cut(s)	110, 605
TaaI	ACNGT	2 cut(s)	31, 662
TaqI	TCGA	2 cut(s)	435, 487
TaqII	GACCGA	1 cut(s)	439
TasI	AATT	5 cut(s)	9, 140, 243, 489, 556
TfiI	GAWTC	2 cut(s)	212, 323
Tru1I	TTAA	2 cut(s)	8, 138
Tru9I	TTAA	2 cut(s)	8, 138
TscAI	CASTG	3 cut(s)	106, 358, 667
TspDTI	ATGAA	4 cut(s)	164, 252, 279, 482
TspRI	CASTG	3 cut(s)	106, 358, 667
VneI	GTGCAC	1 cut(s)	656
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	3 cut(s)	140, 489, 556
XspI	CTAG	2 cut(s)	110, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.