Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003474

Physical Location & Seq

Genomic Coordinates Forward (+)

62941909 .. 62947820

Gene Structure 5912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG466400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGAGCCATAGGTGTAAAGGTAGACCTTGAATCAGATGAGGAGATCCCATTTAGCTCATCAGCAGCTACGAATAAAGTAGAGGCCTTGGATTTTGAGATGGTTCATTTGCCTTCGCGGCCAGTTATGCCAAACTCATGGATTGCAAGACATATAGGGATAAGAGCTGTGAGGAGTATTTATATTGTCTTATTAAAAGCAAAGATCAACATGTTGCTACCATTTGGTCCACTGGCAATTCTGCTACATTACGTTACTGGAAAGCATGGATGGGTCTTTTTCTTCAGCTTATTGGGCATCATACCTTTGGCAGAGCGTCTAGGATATGCGACTGAGCAACTCGCTTTCTACACAGGGCCAACAGTTGGGGGACTTTTAAATGCCACATTTGGAAATGCAACAGAAATGATCATATCGATTTATGCATTGAAGAATGGAATGATTAGGGTTGTTCAACAATCGTTGTTGGGGTCAATCTTGTCAAACATGCTCTTAGTTCTGGGTTGTGCCTTCTTCTCTGGTGGGATCGTTCATTACAATAAAGTTCAGGTGTTCAACAAGTCGGCTGCCGTCGTGAATTCTGGATTGTTGTTGATGGCTGTAATGGGGATAATGTTTCCAGCTGTGCTTCATTTTACACGCACAGAGGTGCATTTTGGGAAGTCAGAGTTGGCTCTTTCAAGATTTAGTAGCTGTATAATGCTTGTGGCATATGCAAGCTACCTTTTTTTTCAACTTAGAAGTCATCGTAGTCTTTATAACCCCATTAATGAGGAAGGAGACAATGATGAAGATTGTGATGAGGATGAGATTCCTGAGATAACTCACTGGGAAGCAATTGGCTGGCTTTCTGTTTTAACTGTGTGGGTGTCCATTTTGTCCGGATACCTTGTCGATGCCATCCAGGGAGCATCAGACTCTTTCAACATTCCTGTGGCATTTATCAGTGTCATTTTGCTCCCTATTGTAGGAAATGCTGCAGAGCATGCAAGTGCTATCATGTTTGCCATGAAAGATAAGCTTGACATTACACTTGGAGTTGCGATTGGATCATCGACACAAATATCCATGTTTGTGGTGAGGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009705 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

362

Amino Acids

39.54

Weight (kDa)

5.67

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	91 - 246	2e-22	Sodium/calcium exchanger protein
Na_Ca_ex	PF01699	280 - 360	5.9e-12	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003474)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37510 FvH4_6g37510
malus_domestica	MD09G1157100.v1.1 MD17G1143500.v1.1
prunus_persica	Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1 Prupe.3G168500_v2.0.a1
pyrus_communis	pycom09g07580 pycom09g07590 pycom17g13660
rosa_chinensis	RchiOBHm_Chr2g0150371 RchiOBHm_Chr2g0150391 RchiOBHm_Chr7g0199401
rosa_laevigata	RLG00000020493 RLG00000020495
rosa_multiflora	Rmu_sc0002179.1_g000009 Rmu_ssc0000480.1_g000006
rosa_roxburghii	Rroxscaffold_2G00097160 Rroxscaffold_2G00097180
rosa_rugosa	Rorug02G0421000 Rorug02G0421000 Rorug02G0421000 Rorug02G0421100
rosa_samantha	Rh2AG480100 Rh2AG480300 Rh2CG466400 Rh2CG466600 Rh2DG501100 Rh5DG402100
rosa_wichuraiana	Rw2G039180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	759
AccB7I	CCANNNNNTGG	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	118
AccIII	TCCGGA	1 cut(s)	881
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	3 cut(s)	40, 533, 1057
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	365, 968
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	7 cut(s)	32, 430, 455, 556, 681, 734, 925
AjnI	CCWGG	1 cut(s)	903
AjuI	GAANNNNNNNTTGG	2 cut(s)	653, 685
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	8 cut(s)	57, 68, 167, 288, 623, 693, 720, 1021
AluI	AGCT	8 cut(s)	57, 68, 167, 288, 623, 693, 720, 1021
Alw26I	GTCTC	1 cut(s)	774
AlwI	GGATC	3 cut(s)	40, 533, 1057
Aor13HI	TCCGGA	1 cut(s)	881
AoxI	GGCC	3 cut(s)	84, 119, 356
ApeKI	GCWGC	3 cut(s)	65, 566, 977
ApoI	RAATTY	1 cut(s)	577
AseI	ATTAAT	1 cut(s)	768
AspS9I	GGNCC	2 cut(s)	227, 356
AvaII	GGWCC	1 cut(s)	227
BbvI	GCAGC	3 cut(s)	77, 553, 964
BccI	CCATC	4 cut(s)	94, 264, 589, 908
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	905
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	774
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	978
BfuI	GTATCC	1 cut(s)	878
BglI	GCCNNNNNGGC	1 cut(s)	118
BisI	GCNGC	4 cut(s)	66, 119, 567, 978
BlsI	GCNGC	4 cut(s)	67, 120, 568, 979
Bme1390I	CCNGG	1 cut(s)	905
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	227, 356
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	905
BmrI	ACTGGG	1 cut(s)	838
BmsI	GCATC	3 cut(s)	306, 886, 920
BmuI	ACTGGG	1 cut(s)	838
Bsa29I	ATCGAT	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	87, 904
BsaWI	WCCGGW	1 cut(s)	881
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 968
Bse1I	ACTGG	4 cut(s)	122, 237, 262, 833
BseAI	TCCGGA	1 cut(s)	881
BseBI	CCWGG	1 cut(s)	905
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	2 cut(s)	87, 904
BseGI	GGATG	3 cut(s)	275, 811, 900
BseLI	CCNNNNNNNGG	2 cut(s)	365, 968
BseMII	CTCAG	2 cut(s)	324, 807
BseNI	ACTGG	4 cut(s)	122, 237, 262, 833
BseRI	GAGGAG	2 cut(s)	56, 187
BseXI	GCAGC	3 cut(s)	77, 553, 964
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	3 cut(s)	86, 121, 358
BshVI	ATCGAT	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	882
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	365, 968
BsmAI	GTCTC	1 cut(s)	774
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	3 cut(s)	86, 121, 358
Bsp13I	TCCGGA	1 cut(s)	881
Bsp143I	GATC	5 cut(s)	45, 204, 408, 525, 1049
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	3 cut(s)	86, 121, 358
BspCNI	CTCAG	2 cut(s)	325, 808
BspDI	ATCGAT	1 cut(s)	416
BspEI	TCCGGA	1 cut(s)	881
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	982
BspPI	GGATC	3 cut(s)	40, 533, 1057
BsrI	ACTGG	4 cut(s)	122, 237, 262, 833
BssECI	CCNNGG	2 cut(s)	87, 904
BssMI	GATC	5 cut(s)	45, 204, 408, 525, 1049
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	905
Bst4CI	ACNGT	2 cut(s)	364, 862
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstC8I	GCNNGC	3 cut(s)	718, 845, 987
BstDEI	CTNAG	4 cut(s)	333, 493, 737, 816
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstF5I	GGATG	3 cut(s)	275, 811, 900
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	5 cut(s)	48, 207, 411, 528, 1052
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	5 cut(s)	45, 204, 408, 525, 1049
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 127, 294, 986
BstNI	CCWGG	1 cut(s)	905
BstNSI	RCATGY	3 cut(s)	214, 490, 989
BstSCI	CCNGG	1 cut(s)	903
BstSFI	CTRYAG	1 cut(s)	978
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	3 cut(s)	77, 553, 964
BstX2I	RGATCY	1 cut(s)	45
BstXI	CCANNNNNNTGG	2 cut(s)	138, 1075
BstYI	RGATCY	1 cut(s)	45
Bsu15I	ATCGAT	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	3 cut(s)	86, 121, 358
BsuTUI	ATCGAT	1 cut(s)	416
BtsCI	GGATG	3 cut(s)	275, 811, 900
BtsIMutI	CAGTG	3 cut(s)	230, 826, 952
Cac8I	GCNNGC	3 cut(s)	718, 845, 987
Cfr13I	GGNCC	2 cut(s)	227, 356
ClaI	ATCGAT	1 cut(s)	416
CseI	GACGC	1 cut(s)	305
CviAII	CATG	8 cut(s)	138, 211, 266, 487, 986, 1000, 1009, 1069
DdeI	CTNAG	4 cut(s)	333, 493, 737, 816
DpnI	GATC	5 cut(s)	47, 206, 410, 527, 1051
DpnII	GATC	5 cut(s)	45, 204, 408, 525, 1049
DraI	TTTAAA	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	268
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	903
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	8 cut(s)	141, 214, 269, 490, 989, 1003, 1012, 1072
FalI	AAGNNNNNCTT	2 cut(s)	1005, 1037
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	8 cut(s)	137, 210, 265, 486, 985, 999, 1008, 1068
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	4 cut(s)	66, 119, 567, 978
FokI	GGATG	3 cut(s)	282, 818, 887
Fsp4HI	GCNGC	4 cut(s)	66, 119, 567, 978
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	4 cut(s)	66, 119, 567, 978
HaeIII	GGCC	3 cut(s)	86, 121, 358
HapII	CCGG	1 cut(s)	882
HgaI	GACGC	1 cut(s)	305
Hin1II	CATG	8 cut(s)	141, 214, 269, 490, 989, 1003, 1012, 1072
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	3 cut(s)	32, 811, 917
HpaII	CCGG	1 cut(s)	882
Hpy166II	GTNNAC	2 cut(s)	25, 230
Hpy188I	TCNGA	3 cut(s)	37, 667, 916
Hpy188III	TCNNGA	5 cut(s)	574, 582, 681, 815, 882
Hpy8I	GTNNAC	2 cut(s)	25, 230
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	3 cut(s)	123, 520, 770
HpyCH4III	ACNGT	2 cut(s)	364, 862
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	7 cut(s)	146, 398, 425, 652, 716, 980, 989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 127, 294, 986
HpyF3I	CTNAG	4 cut(s)	333, 493, 737, 816
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	8 cut(s)	141, 214, 269, 490, 989, 1003, 1012, 1072
Kpn2I	TCCGGA	1 cut(s)	881
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	5 cut(s)	45, 204, 408, 525, 1049
LmnI	GCTCC	3 cut(s)	5, 908, 963
Lsp1109I	GCAGC	3 cut(s)	77, 553, 964
LweI	GCATC	3 cut(s)	306, 886, 920
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	5 cut(s)	47, 206, 410, 527, 1051
MboI	GATC	5 cut(s)	45, 204, 408, 525, 1049
MboII	GAAGA	4 cut(s)	274, 442, 505, 803
MfeI	CAATTG	1 cut(s)	837
MflI	RGATCY	1 cut(s)	45
MluCI	AATT	3 cut(s)	237, 577, 837
MlyI	GAGTC	1 cut(s)	911
MnlI	CCTC	7 cut(s)	34, 76, 165, 640, 766, 796, 1074
Mph1103I	ATGCAT	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	881
MseI	TTAA	4 cut(s)	194, 377, 768, 857
MslI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	882
MspR9I	CCNGG	1 cut(s)	905
MunI	CAATTG	1 cut(s)	837
MvaI	CCWGG	1 cut(s)	905
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	118, 127, 294, 986
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	5 cut(s)	45, 204, 408, 525, 1049
NlaIII	CATG	8 cut(s)	141, 214, 269, 490, 989, 1003, 1012, 1072
NlaIV	GGNNCC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	3 cut(s)	214, 490, 989
OliI	CACNNNNGTG	1 cut(s)	647
PaeI	GCATGC	1 cut(s)	989
PceI	AGGCCT	1 cut(s)	86
PciI	ACATGT	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	32, 811
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	4 cut(s)	67, 120, 568, 979
PleI	GAGTC	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	911
PscI	ACATGT	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	768
PsiI	TTATAA	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	903
PspGI	CCWGG	1 cut(s)	903
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	227, 356
PstI	CTGCAG	1 cut(s)	982
PsuI	RGATCY	1 cut(s)	45
PvuII	CAGCTG	1 cut(s)	623
RseI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
SaqAI	TTAA	4 cut(s)	194, 377, 768, 857
SatI	GCNGC	4 cut(s)	66, 119, 567, 978
Sau3AI	GATC	5 cut(s)	45, 204, 408, 525, 1049
Sau96I	GGNCC	2 cut(s)	227, 356
SchI	GAGTC	1 cut(s)	911
ScrFI	CCNGG	1 cut(s)	905
SfaNI	GCATC	3 cut(s)	306, 886, 920
SfcI	CTRYAG	1 cut(s)	978
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	4 cut(s)	647, 932, 990, 1073
SphI	GCATGC	1 cut(s)	989
Sse9I	AATT	3 cut(s)	237, 577, 837
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	903
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	364, 862
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	3 cut(s)	416, 894, 1055
TasI	AATT	3 cut(s)	237, 577, 837
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	32, 811
Tru1I	TTAA	4 cut(s)	194, 377, 768, 857
Tru9I	TTAA	4 cut(s)	194, 377, 768, 857
TscAI	CASTG	3 cut(s)	237, 833, 952
TseI	GCWGC	3 cut(s)	65, 566, 977
TspDTI	ATGAA	5 cut(s)	95, 521, 620, 804, 1025
TspRI	CASTG	3 cut(s)	237, 833, 952
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	227
VspI	ATTAAT	1 cut(s)	768
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	3 cut(s)	214, 490, 989
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	320
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.