Rmu_ssc0000480.1_g000006

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000480.1
Physical Location & Seq
Forward (+)
24191 .. 29112
4922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000480.1_g000006.1.cds

Sequence Viewer

Length: 1551 bp
atgagcttggaagggacacttcgcagaaccttcgtggtgttaagtttacttcgttgtcttcaactcaactgtttgcttgttgccggcattcaacgccatctctccactattgagtctccatcatcttcttcattctatcaatatttgatcggagcaaccaaagtagcccatttgattatctccactttcagagtggccaagactttgaagaaagttgatcaaatccaatccatttttgcttctgggtctgagatgggagccataggtgtaaaggtagaccttgaatcagatgaggagatcccatttagctcatcagcagctacgaataaagtagaggccttggattttgagatggttcatttgccttcgcggccagttatgccaaactcatggattgcaagacatatagggatgagagccgtgaggagtatttatgttgtcttattaaaagcaaagatcaacatgttgctaccatttggtccactggcaatcctgctacattacgttactggaaagcatggatgggtctttttcttcagcttattgggcatcatacctttggcagagcgtctaggatatgcgactgagcaactcgctttctacacagggccaacagttgggggacttttaaatgccacatttggaaatgcaacagaaatgatcatatcgatttatgcattgaagaatggaatgattagggttgttcaacaatcgttgttggggtcaatcttgtcaaacatgctcttagttctgggttgtgcctttttctctggtgggattgttcattacaataaagttcaggtgttcaacaagtcggctgccgtcgtgaattctggattgttgttgatggctgtaatggggataatgtttccagctgtgcttcattttacacgcacagaggtgcattttgggaagtcagagttggctctttcaagatttagtagctgtataatgcttgtggcatatgcaagctaccttttctttcaacttagaagtcatcgtagtctttataaccccatcaatgaggaaggagacaatgatcaagattgtgatgaggatgagattcctgagataactcactgggaagcaattggctggctttctgttttaactgtgtgggtgtccattttgtccggataccttgtcgatgccatccagggagcatcagactctttcaacattcctgtggcatttatcagtgtcattttgctccctattgtaggaaatgctgcagagcatgcaagtgctatcatgtttgccatgaaagataagcttgacattacacttggagttgcgattggatcatcgacgcaaatatccatgtttgtgattcccttctgtgtggttgttgggtggatcatgggagagccaatggacttgaattttcaactctttgagactgctacactctttatcaccgtgcttgtagtggcatttatgttgcaggaagggacgtcaaactacttcaaaggattgatgcttatcctgtgttatctcatagttgcagccagtttttttgtacatgtagatccttcaaatgatgctaactaa

Protein Analysis

516

Amino Acids

56.63

Weight (kDa)

5.9

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1011
AatII GACGTC 1 cut(s) 1457
AccB7I CCANNNNNTGG 1 cut(s) 617
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 370
AccIII TCCGGA 1 cut(s) 1133
AciI CCGC 1 cut(s) 370
AclWI GGATC 4 cut(s) 292, 1309, 1364, 1523
AcoI YGGCCR 2 cut(s) 195, 371
AcsI RAATTY 2 cut(s) 829, 1381
AcuI CTGAAG 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 1454
AfaI GTAC 1 cut(s) 1521
AfiI CCNNNNNNNGG 2 cut(s) 617, 1220
AflIII ACRYGT 2 cut(s) 462, 1522
AjnI CCWGG 1 cut(s) 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AleI CACNNNNGTG 1 cut(s) 899
AluBI AGCT 8 cut(s) 6, 309, 320, 540, 875, 945, 972, 1273
AluI AGCT 8 cut(s) 6, 309, 320, 540, 875, 945, 972, 1273
Alw26I GTCTC 3 cut(s) 120, 1026, 1391
AlwI GGATC 4 cut(s) 292, 1309, 1364, 1523
Aor13HI TCCGGA 1 cut(s) 1133
AoxI GGCC 4 cut(s) 195, 336, 371, 608
ApeKI GCWGC 4 cut(s) 317, 818, 1229, 1505
ApoI RAATTY 2 cut(s) 829, 1381
AspS9I GGNCC 2 cut(s) 479, 608
AsuHPI GGTGA 1 cut(s) 1408
AvaII GGWCC 1 cut(s) 479
BalI TGGCCA 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 4 cut(s) 329, 805, 1216, 1517
BccI CCATC 8 cut(s) 105, 127, 247, 346, 516, 841, 1025, 1160
BceAI ACGGC 2 cut(s) 404, 806
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 1 cut(s) 1157
BciVI GTATCC 1 cut(s) 1130
BclI TGATCA 3 cut(s) 217, 660, 1039
BcoDI GTCTC 3 cut(s) 120, 1026, 1391
BfaI CTAG 1 cut(s) 572
BfmI CTRYAG 1 cut(s) 1230
BfuI GTATCC 1 cut(s) 1130
BglI GCCNNNNNGGC 1 cut(s) 370
BisI GCNGC 5 cut(s) 318, 371, 819, 1230, 1506
BlsI GCNGC 5 cut(s) 319, 372, 820, 1231, 1507
Bme1390I CCNGG 1 cut(s) 1157
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 479, 608
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 1157
BmrI ACTGGG 1 cut(s) 1090
BmsI GCATC 5 cut(s) 558, 1138, 1172, 1467, 1531
BmuI ACTGGG 1 cut(s) 1090
BpiI GAAGAC 1 cut(s) 50
Bsa29I ATCGAT 1 cut(s) 668
BsaBI GATNNNNATC 1 cut(s) 1481
BsaHI GRCGYC 1 cut(s) 1454
BsaJI CCNNGG 2 cut(s) 339, 1156
BsaWI WCCGGW 1 cut(s) 1133
Bsc4I CCNNNNNNNGG 2 cut(s) 617, 1220
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 5 cut(s) 374, 489, 514, 1085, 1509
Bse8I GATNNNNATC 1 cut(s) 1481
BseAI TCCGGA 1 cut(s) 1133
BseBI CCWGG 1 cut(s) 1157
BseCI ATCGAT 1 cut(s) 668
BseDI CCNNGG 2 cut(s) 339, 1156
BseGI GGATG 4 cut(s) 417, 527, 1063, 1152
BseJI GATNNNNATC 1 cut(s) 1481
BseLI CCNNNNNNNGG 2 cut(s) 617, 1220
BseMII CTCAG 3 cut(s) 240, 576, 1059
BseNI ACTGG 5 cut(s) 374, 489, 514, 1085, 1509
BseRI GAGGAG 2 cut(s) 308, 439
BseXI GCAGC 4 cut(s) 329, 805, 1216, 1517
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 4 cut(s) 197, 338, 373, 610
BshVI ATCGAT 1 cut(s) 668
BsiSI CCGG 2 cut(s) 84, 1134
BslFI GGGAC 3 cut(s) 28, 636, 1465
BslI CCNNNNNNNGG 2 cut(s) 617, 1220
BsmAI GTCTC 3 cut(s) 120, 1026, 1391
BsmFI GGGAC 3 cut(s) 28, 636, 1465
BsmI GAATGC 1 cut(s) 87
BsnI GGCC 4 cut(s) 197, 338, 373, 610
Bsp13I TCCGGA 1 cut(s) 1133
Bsp1407I TGTACA 1 cut(s) 1519
Bsp143I GATC 9 cut(s) 147, 217, 297, 456, 660, 1039, 1301, 1356, 1528
BspACI CCGC 1 cut(s) 370
BspANI GGCC 4 cut(s) 197, 338, 373, 610
BspCNI CTCAG 3 cut(s) 241, 577, 1060
BspDI ATCGAT 1 cut(s) 668
BspEI TCCGGA 1 cut(s) 1133
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 1234
BspPI GGATC 4 cut(s) 292, 1309, 1364, 1523
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 1519
BsrI ACTGG 5 cut(s) 374, 489, 514, 1085, 1509
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 339, 1156
BssMI GATC 9 cut(s) 147, 217, 297, 456, 660, 1039, 1301, 1356, 1528
BssNI GRCGYC 1 cut(s) 1454
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 1157
Bst4CI ACNGT 4 cut(s) 71, 616, 1114, 1420
BstACI GRCGYC 1 cut(s) 1454
BstAPI GCANNNNNTGC 1 cut(s) 1238
BstAUI TGTACA 1 cut(s) 1519
BstC8I GCNNGC 4 cut(s) 85, 970, 1097, 1239
BstDEI CTNAG 5 cut(s) 249, 585, 745, 989, 1068
BstENI CCTNNNNNAGG 1 cut(s) 1218
BstF5I GGATG 4 cut(s) 417, 527, 1063, 1152
BstFNI CGCG 1 cut(s) 370
BstKTI GATC 9 cut(s) 150, 220, 300, 459, 663, 1042, 1304, 1359, 1531
BstMAI GTCTC 3 cut(s) 120, 1026, 1391
BstMBI GATC 9 cut(s) 147, 217, 297, 456, 660, 1039, 1301, 1356, 1528
BstMWI GCNNNNNNNGC 5 cut(s) 93, 370, 379, 546, 1238
BstNI CCWGG 1 cut(s) 1157
BstNSI RCATGY 4 cut(s) 466, 742, 1241, 1526
BstSCI CCNGG 1 cut(s) 1155
BstSFI CTRYAG 1 cut(s) 1230
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 4 cut(s) 329, 805, 1216, 1517
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 2 cut(s) 297, 1528
BstXI CCANNNNNNTGG 1 cut(s) 390
BstYI RGATCY 2 cut(s) 297, 1528
Bsu15I ATCGAT 1 cut(s) 668
BsuI GTATCC 1 cut(s) 1130
BsuRI GGCC 4 cut(s) 197, 338, 373, 610
BsuTUI ATCGAT 1 cut(s) 668
BtsCI GGATG 4 cut(s) 417, 527, 1063, 1152
BtsIMutI CAGTG 3 cut(s) 482, 1078, 1204
Cac8I GCNNGC 4 cut(s) 85, 970, 1097, 1239
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 479, 608
ClaI ATCGAT 1 cut(s) 668
CseI GACGC 2 cut(s) 557, 1318
Csp6I GTAC 1 cut(s) 1520
CviQI GTAC 1 cut(s) 1520
DdeI CTNAG 5 cut(s) 249, 585, 745, 989, 1068
DpnI GATC 9 cut(s) 149, 219, 299, 458, 662, 1041, 1303, 1358, 1530
DpnII GATC 9 cut(s) 147, 217, 297, 456, 660, 1039, 1301, 1356, 1528
DraI TTTAAA 1 cut(s) 630
EaeI YGGCCR 2 cut(s) 195, 371
Eco130I CCWWGG 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 520
EcoNI CCTNNNNNAGG 1 cut(s) 1218
EcoRI GAATTC 1 cut(s) 829
EcoRII CCWGG 1 cut(s) 1155
EcoT14I CCWWGG 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 339
FalI AAGNNNNNCTT 3 cut(s) 35, 1257, 1289
FaqI GGGAC 3 cut(s) 28, 636, 1465
FauNDI CATATG 1 cut(s) 964
FbaI TGATCA 3 cut(s) 217, 660, 1039
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 5 cut(s) 318, 371, 819, 1230, 1506
FokI GGATG 4 cut(s) 424, 534, 1070, 1139
Fsp4HI GCNGC 5 cut(s) 318, 371, 819, 1230, 1506
FspBI CTAG 1 cut(s) 572
GluI GCNGC 5 cut(s) 318, 371, 819, 1230, 1506
HaeIII GGCC 4 cut(s) 197, 338, 373, 610
HapII CCGG 2 cut(s) 84, 1134
HgaI GACGC 2 cut(s) 557, 1318
Hin1I GRCGYC 1 cut(s) 1454
HindIII AAGCTT 1 cut(s) 1271
HinfI GANTC 5 cut(s) 113, 284, 1063, 1169, 1330
HpaII CCGG 2 cut(s) 84, 1134
HphI GGTGA 1 cut(s) 1408
Hpy166II GTNNAC 3 cut(s) 47, 277, 482
Hpy188I TCNGA 6 cut(s) 152, 191, 250, 289, 919, 1168
Hpy188III TCNNGA 6 cut(s) 826, 834, 933, 1043, 1067, 1134
Hpy8I GTNNAC 3 cut(s) 47, 277, 482
Hpy99I CGWCG 2 cut(s) 827, 1312
HpyAV CCTTC 7 cut(s) 5, 40, 375, 1022, 1345, 1442, 1542
HpyCH4III ACNGT 4 cut(s) 71, 616, 1114, 1420
HpyCH4IV ACGT 2 cut(s) 504, 1454
HpyCH4V TGCA 9 cut(s) 398, 650, 677, 904, 968, 1232, 1241, 1444, 1505
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 370, 379, 546, 1238
HpyF3I CTNAG 5 cut(s) 249, 585, 745, 989, 1068
HpySE526I ACGT 2 cut(s) 504, 1454
Hsp92I GRCGYC 1 cut(s) 1454
Kpn2I TCCGGA 1 cut(s) 1133
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Ksp22I TGATCA 3 cut(s) 217, 660, 1039
Kzo9I GATC 9 cut(s) 147, 217, 297, 456, 660, 1039, 1301, 1356, 1528
LmnI GCTCC 4 cut(s) 152, 257, 1160, 1215
Lsp1109I GCAGC 4 cut(s) 329, 805, 1216, 1517
LweI GCATC 5 cut(s) 558, 1138, 1172, 1467, 1531
MaeI CTAG 1 cut(s) 572
MaeII ACGT 2 cut(s) 504, 1454
MaeIII GTNAC 1 cut(s) 505
MalI GATC 9 cut(s) 149, 219, 299, 458, 662, 1041, 1303, 1358, 1530
MboI GATC 9 cut(s) 147, 217, 297, 456, 660, 1039, 1301, 1356, 1528
MboII GAAGA 6 cut(s) 50, 117, 120, 220, 526, 694
MfeI CAATTG 1 cut(s) 1089
MflI RGATCY 2 cut(s) 297, 1528
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 3 cut(s) 829, 1089, 1381
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 2 cut(s) 122, 1163
MnlI CCTC 6 cut(s) 286, 328, 417, 892, 1018, 1048
Mox20I TGGCCA 1 cut(s) 197
Mph1103I ATGCAT 1 cut(s) 679
MroI TCCGGA 1 cut(s) 1133
MroNI GCCGGC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 197
MseI TTAA 4 cut(s) 41, 446, 629, 1109
MslI CAYNNNNRTG 4 cut(s) 899, 1184, 1242, 1325
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 875
MspI CCGG 2 cut(s) 84, 1134
MspR9I CCNGG 1 cut(s) 1157
MunI CAATTG 1 cut(s) 1089
Mva1269I GAATGC 1 cut(s) 87
MvaI CCWGG 1 cut(s) 1157
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 5 cut(s) 93, 370, 379, 546, 1238
NaeI GCCGGC 1 cut(s) 85
NdeI CATATG 1 cut(s) 964
NdeII GATC 9 cut(s) 147, 217, 297, 456, 660, 1039, 1301, 1356, 1528
NgoMIV GCCGGC 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 4 cut(s) 466, 742, 1241, 1526
OliI CACNNNNGTG 1 cut(s) 899
PaeI GCATGC 1 cut(s) 1241
PceI AGGCCT 1 cut(s) 338
PciI ACATGT 2 cut(s) 462, 1522
PctI GAATGC 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 3 cut(s) 284, 1063, 1330
PflMI CCANNNNNTGG 1 cut(s) 617
PkrI GCNGC 5 cut(s) 319, 372, 820, 1231, 1507
PleI GAGTC 2 cut(s) 121, 1163
PpsI GAGTC 2 cut(s) 121, 1163
PscI ACATGT 2 cut(s) 462, 1522
PsiI TTATAA 1 cut(s) 1011
Psp6I CCWGG 1 cut(s) 1155
PspGI CCWGG 1 cut(s) 1155
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 479, 608
PstI CTGCAG 1 cut(s) 1234
PsuI RGATCY 2 cut(s) 297, 1528
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 1 cut(s) 1521
RsaNI GTAC 1 cut(s) 1520
RseI CAYNNNNRTG 4 cut(s) 899, 1184, 1242, 1325
SaqAI TTAA 4 cut(s) 41, 446, 629, 1109
SatI GCNGC 5 cut(s) 318, 371, 819, 1230, 1506
Sau3AI GATC 9 cut(s) 147, 217, 297, 456, 660, 1039, 1301, 1356, 1528
Sau96I GGNCC 2 cut(s) 479, 608
SchI GAGTC 2 cut(s) 122, 1163
ScrFI CCNGG 1 cut(s) 1157
SfaNI GCATC 5 cut(s) 558, 1138, 1172, 1467, 1531
SfcI CTRYAG 1 cut(s) 1230
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 4 cut(s) 899, 1184, 1242, 1325
SphI GCATGC 1 cut(s) 1241
Sse9I AATT 3 cut(s) 829, 1089, 1381
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 1 cut(s) 370
SspI AATATT 1 cut(s) 143
SspMI CTAG 1 cut(s) 572
StuI AGGCCT 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 1155
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 4 cut(s) 71, 616, 1114, 1420
TaiI ACGT 2 cut(s) 507, 1457
TaqI TCGA 3 cut(s) 668, 1146, 1307
TasI AATT 3 cut(s) 829, 1089, 1381
TatI WGTACW 1 cut(s) 1519
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 3 cut(s) 284, 1063, 1330
Tru1I TTAA 4 cut(s) 41, 446, 629, 1109
Tru9I TTAA 4 cut(s) 41, 446, 629, 1109
TscAI CASTG 3 cut(s) 489, 1085, 1204
TseI GCWGC 4 cut(s) 317, 818, 1229, 1505
TspDTI ATGAA 5 cut(s) 120, 347, 773, 872, 1277
TspRI CASTG 3 cut(s) 489, 1085, 1204
Van91I CCANNNNNTGG 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 1218
XapI RAATTY 2 cut(s) 829, 1381
XceI RCATGY 4 cut(s) 466, 742, 1241, 1526
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 1 cut(s) 572
ZraI GACGTC 1 cut(s) 1455
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.