Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Reverse (-)

30658524 .. 30661230

Gene Structure 2707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTGGTAAAGGTGTATGGCCCCTCATATGCTTCTCCTAAACGAGTTCTAGTGTGTCTTGTTGAGAAGGAGATTGAGTTTGAAACCATCCCCATTGATCTTTTCAAGGGAGAACATAAAGATCCTGAATTCCTCAAATTACAACCCTTTGGAGCAGTTCCTGTTATTCAAGATGGGGATTATACTTTATATGAATCACGGGCAATTATAAGATACTACGCAGAAAAGTACAAGTCACAAGGGACTGATTTGCTAGGAAAGACGATTGAGGAAAGAGGCCTTGTGGAACAATGGCTAGAGGTTGAAGCTCAAAACTACCACCCATCAATTGACAACTTGGTCATTCACATTTTGTTTGCCCCAGTCCAGGGTTTCCCTTCAGACCCAAAGATAATTCAAGAGAGTGAAGAGAAGTTAGGCAAGGTGTTGGATGTTTATGAGGAGAGGCTATCAAAGAGCAAATATTTGGCTGGTGATTTTTTCAGCCTTGCTGATCTTAGCCACCTTCCATTTACACAGTACTTGGTGGGTGCTGTAGGGAAAGACTACATGATAAAGAGCAGAAAGCATGTCTCAGCTTGGTGGGATGATATTAGCAACAGGCCATCGTGGAAGAAGGTGCTCGAGTTCGGTGCCCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

215

Amino Acids

24.58

Weight (kDa)

5.46

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	4.8e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	10 - 78	1.4e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 75	7.1e-14	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	130 - 202	1.5e-13	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	135 - 207	3.2e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	209
AasI	GACNNNNNNGTC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	632
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	230, 521
AfiI	CCNNNNNNNGG	2 cut(s)	367, 368
AgsI	TTSAA	5 cut(s)	83, 106, 170, 305, 398
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	2 cut(s)	308, 578
AluI	AGCT	2 cut(s)	308, 578
Alw21I	GWGCWC	1 cut(s)	624
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	3 cut(s)	19, 277, 602
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	623
BaeGI	GKGCMC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	632
Bbv12I	GWGCWC	1 cut(s)	624
BccI	CCATC	4 cut(s)	95, 167, 331, 613
BcgI	CGANNNNNNTGC	1 cut(s)	614
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	3 cut(s)	50, 254, 296
BfmI	CTRYAG	1 cut(s)	534
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	22, 634
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 368
Bse1I	ACTGG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	367
BseGI	GGATG	3 cut(s)	87, 436, 592
BseLI	CCNNNNNNNGG	2 cut(s)	367, 368
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	637
BshFI	GGCC	3 cut(s)	21, 279, 604
BshNI	GGYRCC	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	367, 368
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	21, 279, 604
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	2 cut(s)	624, 637
Bsp143I	GATC	3 cut(s)	97, 121, 493
BspANI	GGCC	3 cut(s)	21, 279, 604
BspCNI	CTCAG	1 cut(s)	587
BspLI	GGNNCC	2 cut(s)	22, 634
BspPI	GGATC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	367
BssMI	GATC	3 cut(s)	97, 121, 493
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	519
Bst6I	CTCTTC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	497, 574
BstF5I	GGATG	3 cut(s)	87, 436, 592
BstKTI	GATC	3 cut(s)	100, 124, 496
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	3 cut(s)	97, 121, 493
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	637
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	21, 279, 604
BtsCI	GGATG	3 cut(s)	87, 436, 592
CaiI	CAGNNNCTG	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	229, 520
CviAII	CATG	2 cut(s)	550, 569
CviQI	GTAC	2 cut(s)	229, 520
DdeI	CTNAG	2 cut(s)	497, 574
DpnI	GATC	3 cut(s)	99, 123, 495
DpnII	GATC	3 cut(s)	97, 121, 493
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco147I	AGGCCT	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	553, 572
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	2 cut(s)	549, 568
FauNDI	CATATG	1 cut(s)	28
FokI	GGATG	3 cut(s)	74, 443, 599
FspBI	CTAG	3 cut(s)	50, 254, 296
HaeIII	GGCC	3 cut(s)	21, 279, 604
Hin1II	CATG	2 cut(s)	553, 572
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	1 cut(s)	485
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	125, 170, 398
HpyAV	CCTTC	4 cut(s)	61, 387, 515, 610
HpyCH4III	ACNGT	1 cut(s)	519
HpyF3I	CTNAG	2 cut(s)	497, 574
Hsp92II	CATG	2 cut(s)	553, 572
Kzo9I	GATC	3 cut(s)	97, 121, 493
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	7 cut(s)	138, 174, 353, 375, 380, 456, 586
MaeI	CTAG	3 cut(s)	50, 254, 296
MaeIII	GTNAC	1 cut(s)	234
MalI	GATC	3 cut(s)	99, 123, 495
MboI	GATC	3 cut(s)	97, 121, 493
MboII	GAAGA	2 cut(s)	419, 625
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	624, 637
MluCI	AATT	5 cut(s)	128, 137, 204, 327, 393
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	7 cut(s)	34, 143, 262, 269, 292, 433, 438
MseI	TTAA	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	368
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	3 cut(s)	97, 121, 493
NlaIII	CATG	2 cut(s)	553, 572
NlaIV	GGNNCC	2 cut(s)	22, 634
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	572
PaeR7I	CTCGAG	1 cut(s)	623
PceI	AGGCCT	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	194
PsiI	TTATAA	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	22, 634
PspPI	GGNCC	1 cut(s)	20
PspXI	VCTCGAGB	1 cut(s)	623
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	2 cut(s)	230, 521
RsaNI	GTAC	2 cut(s)	229, 520
SaqAI	TTAA	1 cut(s)	643
Sau3AI	GATC	3 cut(s)	97, 121, 493
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	2 cut(s)	624, 637
SetI	ASST	7 cut(s)	15, 303, 310, 426, 507, 580, 621
SfcI	CTRYAG	1 cut(s)	534
Sfr274I	CTCGAG	1 cut(s)	623
SlaI	CTCGAG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	5 cut(s)	128, 137, 204, 327, 393
SseBI	AGGCCT	1 cut(s)	279
SspI	AATATT	1 cut(s)	464
SspMI	CTAG	3 cut(s)	50, 254, 296
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	624
TasI	AATT	5 cut(s)	128, 137, 204, 327, 393
TatI	WGTACW	2 cut(s)	228, 519
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TseFI	GTSAC	1 cut(s)	234
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	207
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	623
XspI	CTAG	3 cut(s)	50, 254, 296
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.