Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Forward (+)

55356587 .. 55359103

Gene Structure 2517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0432100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCGTCCAAAACCCTAATTCGAACCGGAGCTTCTCTGATGAACCGGTTCCTATCAAAACCACTGCTCCACCCGAACCCGAATTCGACTCACCAGAACCAGATTGTATCCCACGCCCTCGAAATCACTCCCAAGCTATTCCCCTCTCTCTCCAACTTCGACACCTCCCTCCGTTTTCCCCAAAACGACGCCGGATCGATCACAAGGGTCTTCAATGAGGGCTTCGTGCACCCTTGCGGCCTCCCTTATCTCCCGCTCATCTTACCTGAAGGAGATGACTCTTCATCTAATGAGCCAATGATATTATTTCCGAAGCGGACATTCCAGCCTAGTACTATCAGGCGTAAGAGGAACCATGGCTTTTTTGCTCGCAAGGCAACCAAGGGTGGACGGAGAGTAATTGCTCGAAGAATAGCAAAGGGTCGAGCAAGAATTACAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

147

Amino Acids

16.46

Weight (kDa)

11.59

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L34	PF00468	105 - 147	2.2e-18	Ribosomal protein L34

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	256
AciI	CCGC	3 cut(s)	237, 254, 316
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	2 cut(s)	5, 189
AfaI	GTAC	1 cut(s)	334
AgeI	ACCGGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	3 cut(s)	32, 136, 440
AluI	AGCT	3 cut(s)	32, 136, 440
Alw21I	GWGCWC	1 cut(s)	231
Alw44I	GTGCAC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	82
AsiGI	ACCGGT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	83
AsuII	TTCGAA	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
BmcAI	AGTACT	1 cut(s)	334
BmiI	GGNNCC	2 cut(s)	50, 353
BpiI	GAAGAC	1 cut(s)	202
Bpu14I	TTCGAA	1 cut(s)	22
Bsa29I	ATCGAT	1 cut(s)	197
BsaHI	GRCGYC	2 cut(s)	5, 189
BsaJI	CCNNGG	2 cut(s)	355, 381
BsaWI	WCCGGW	2 cut(s)	26, 45
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse118I	RCCGGY	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	355, 381
BseSI	GKGCMC	1 cut(s)	231
BshFI	GGCC	1 cut(s)	240
BshTI	ACCGGT	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	27, 46, 192
BsnI	GGCC	1 cut(s)	240
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	194, 198
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	3 cut(s)	237, 254, 316
BspANI	GGCC	1 cut(s)	240
BspDI	ATCGAT	1 cut(s)	197
BspLI	GGNNCC	2 cut(s)	50, 353
BspPI	GGATC	1 cut(s)	202
BspT104I	TTCGAA	1 cut(s)	22
BsrBI	CCGCTC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	355, 381
BssMI	GATC	2 cut(s)	194, 198
BssNI	GRCGYC	2 cut(s)	5, 189
BssT1I	CCWWGG	2 cut(s)	355, 381
Bst6I	CTCTTC	1 cut(s)	286
BstACI	GRCGYC	2 cut(s)	5, 189
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	441
BstDSI	CCRYGG	1 cut(s)	355
BstKTI	GATC	2 cut(s)	197, 201
BstMBI	GATC	2 cut(s)	194, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	202
Bsu15I	ATCGAT	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	45
ClaI	ATCGAT	1 cut(s)	197
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	333
CspAI	ACCGGT	1 cut(s)	45
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	8 cut(s)	32, 136, 222, 240, 295, 328, 360, 440
CviKI_1	RGCY	8 cut(s)	32, 136, 222, 240, 295, 328, 360, 440
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	2 cut(s)	196, 200
DpnII	GATC	2 cut(s)	194, 198
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	355, 381
Eco57I	CTGAAG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	355, 381
ErhI	CCWWGG	2 cut(s)	355, 381
FaeI	CATG	1 cut(s)	359
FaiI	YATR	1 cut(s)	357
FatI	CATG	1 cut(s)	355
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	3 cut(s)	27, 46, 192
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	2 cut(s)	5, 189
Hin1II	CATG	1 cut(s)	359
HinfI	GANTC	2 cut(s)	88, 278
HpaII	CCGG	3 cut(s)	27, 46, 192
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	229, 389
Hpy188I	TCNGA	2 cut(s)	39, 312
Hpy8I	GTNNAC	2 cut(s)	229, 389
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	441
Hsp92I	GRCGYC	2 cut(s)	5, 189
Hsp92II	CATG	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	194, 198
LmnI	GCTCC	2 cut(s)	29, 72
LpnPI	CCDG	8 cut(s)	40, 59, 107, 113, 205, 279, 325, 338
MaeI	CTAG	1 cut(s)	330
MalI	GATC	2 cut(s)	196, 200
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	2 cut(s)	194, 198
MboII	GAAGA	3 cut(s)	202, 273, 420
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	4 cut(s)	18, 82, 399, 432
MlyI	GAGTC	2 cut(s)	82, 272
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	7 cut(s)	128, 154, 175, 179, 211, 251, 342
MroXI	GAANNNNTTC	1 cut(s)	47
MspI	CCGG	3 cut(s)	27, 46, 192
MwoI	GCNNNNNNNGC	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	2 cut(s)	194, 198
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	2 cut(s)	50, 353
NspV	TTCGAA	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	47
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	239
PleI	GAGTC	2 cut(s)	82, 272
PpsI	GAGTC	2 cut(s)	82, 272
PspN4I	GGNNCC	2 cut(s)	50, 353
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	2 cut(s)	194, 198
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	2 cut(s)	82, 272
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	34, 138, 167, 268, 442
SfuI	TTCGAA	1 cut(s)	22
Sse9I	AATT	4 cut(s)	18, 82, 399, 432
SsiI	CCGC	3 cut(s)	237, 254, 316
SspMI	CTAG	1 cut(s)	330
StyI	CCWWGG	2 cut(s)	355, 381
TaqI	TCGA	7 cut(s)	22, 86, 120, 159, 197, 406, 424
TasI	AATT	4 cut(s)	18, 82, 399, 432
TatI	WGTACW	1 cut(s)	332
TauI	GCSGC	1 cut(s)	240
TscAI	CASTG	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	56, 273
TspGWI	ACGGA	2 cut(s)	161, 406
TspRI	CASTG	1 cut(s)	69
VneI	GTGCAC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.