Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Reverse (-)

71158963 .. 71162341

Gene Structure 3379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG506100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTGGTAAAGGTGTATGGCCCCTCTTATGCTTCTCCTAAACGTGTGTTAGTGTGCCTCGTTGAGAAGGAGGTTGAGTTTGAAACCATCCCCATTGATCTCTTCAAGCGAGAACATAAAGATCCTGAATTCCTCAAATTACAACCCTTTGGAGCAGTTCCTGTTATTCAAGATGGGGATTATACTTTATATGAATCACGTGCAATCATAAGATACTATGCAGAAAAGTACAAGTCGCAAGGGACTGATTTGCTGGGAAAGACAATCGAGGAAAGAGGTCTTGTGGAACAGTGGCTAGAGGTTGAAGCACAAAACTACCACCCATCAATTGTTAACTTGGTCATTCACATCTTGTTTGCCCCGGCCCAGGGTTTGCCTTCAGACCCAAAGATCATTCAAGAGAGTGAGGAAAAGCTAGGCAAGGTGTTGGATGTGTATGAGGAGAGGCTGTCAAAGAACAAGTACTTGGCTGGTGATTTTTTCAGCCTTGCTGATCTTAGCCACCTTCCATTTACCCAGTACTTGGTGGGTGCTATAGGGAAAGATTATATGATAAAGAGCAGAAAGCATGTCTCTGCTTGGTGGGATGATATTAGCAACAGGCCATCCTGGAAGAAGGTCCTTGAGTTCGGTGCACCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

214

Amino Acids

24.63

Weight (kDa)

5.8

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	9.2e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	10 - 78	2.5e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 75	7.4e-13	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	119 - 202	4.8e-14	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	135 - 207	2.4e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	523
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	363
AcvI	CACGTG	1 cut(s)	200
AfaI	GTAC	3 cut(s)	230, 464, 521
AfiI	CCNNNNNNNGG	3 cut(s)	367, 368, 523
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	5 cut(s)	83, 106, 170, 305, 398
AjnI	CCWGG	2 cut(s)	366, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	1 cut(s)	577
Alw44I	GTGCAC	1 cut(s)	633
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	3 cut(s)	19, 363, 602
ApaLI	GTGCAC	1 cut(s)	633
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	20, 364, 619
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	637
BbrPI	CACGTG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	637
BccI	CCATC	4 cut(s)	95, 167, 331, 613
BciT130I	CCWGG	2 cut(s)	368, 610
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	2 cut(s)	296, 416
BfmI	CTRYAG	1 cut(s)	534
BmcAI	AGTACT	2 cut(s)	464, 521
Bme1390I	CCNGG	3 cut(s)	362, 368, 610
Bme18I	GGWCC	1 cut(s)	619
BmgT120I	GGNCC	3 cut(s)	20, 364, 619
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	3 cut(s)	362, 368, 610
BmrI	ACTGGG	1 cut(s)	511
BmuI	ACTGGG	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	360, 366, 367
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 368, 523
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	2 cut(s)	368, 610
BseDI	CCNNGG	3 cut(s)	360, 366, 367
BseGI	GGATG	4 cut(s)	87, 436, 592, 605
BseLI	CCNNNNNNNGG	3 cut(s)	367, 368, 523
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	637
BseYI	CCCAGC	1 cut(s)	253
BshFI	GGCC	3 cut(s)	21, 365, 604
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	367, 368, 523
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	21, 365, 604
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	4 cut(s)	97, 121, 390, 493
BspANI	GGCC	3 cut(s)	21, 365, 604
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	3 cut(s)	360, 366, 367
BssMI	GATC	4 cut(s)	97, 121, 390, 493
Bst2UI	CCWGG	2 cut(s)	368, 610
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	4 cut(s)	87, 436, 592, 605
BstKTI	GATC	4 cut(s)	100, 124, 393, 496
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	4 cut(s)	97, 121, 390, 493
BstNI	CCWGG	2 cut(s)	368, 610
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	3 cut(s)	360, 366, 608
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	637
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	21, 365, 604
BtsCI	GGATG	4 cut(s)	87, 436, 592, 605
BtsIMutI	CAGTG	1 cut(s)	296
CaiI	CAGNNNCTG	1 cut(s)	161
Cfr13I	GGNCC	3 cut(s)	20, 364, 619
Csp6I	GTAC	3 cut(s)	229, 463, 520
CviAII	CATG	1 cut(s)	569
CviJI	RGCY	9 cut(s)	21, 295, 365, 415, 448, 470, 486, 501, 604
CviKI_1	RGCY	9 cut(s)	21, 295, 365, 415, 448, 470, 486, 501, 604
CviQI	GTAC	3 cut(s)	229, 463, 520
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	4 cut(s)	99, 123, 392, 495
DpnII	GATC	4 cut(s)	97, 121, 390, 493
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	363
Eco72I	CACGTG	1 cut(s)	200
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	366, 608
FaeI	CATG	1 cut(s)	572
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	568
FokI	GGATG	4 cut(s)	74, 443, 592, 599
FspBI	CTAG	2 cut(s)	296, 416
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	21, 365, 604
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	1 cut(s)	572
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	1 cut(s)	194
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	2 cut(s)	334, 635
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	125, 170, 398
Hpy8I	GTNNAC	2 cut(s)	334, 635
HpyAV	CCTTC	4 cut(s)	61, 387, 515, 610
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	2 cut(s)	43, 199
HpyCH4V	TGCA	3 cut(s)	203, 221, 635
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	2 cut(s)	43, 199
Hsp92II	CATG	1 cut(s)	572
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	97, 121, 390, 493
LmnI	GCTCC	1 cut(s)	152
MaeI	CTAG	2 cut(s)	296, 416
MaeII	ACGT	2 cut(s)	43, 199
MalI	GATC	4 cut(s)	99, 123, 392, 495
MboI	GATC	4 cut(s)	97, 121, 390, 493
MboII	GAAGA	2 cut(s)	94, 625
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	3 cut(s)	128, 137, 327
MmeI	TCCRAC	1 cut(s)	408
MseI	TTAA	2 cut(s)	333, 643
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	3 cut(s)	362, 368, 610
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	2 cut(s)	368, 610
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	4 cut(s)	97, 121, 390, 493
NlaIII	CATG	1 cut(s)	572
NlaIV	GGNNCC	1 cut(s)	22
NspI	RCATGY	1 cut(s)	572
PasI	CCCWGGG	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	523
PfoI	TCCNGGA	1 cut(s)	608
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	2 cut(s)	366, 608
PspCI	CACGTG	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	2 cut(s)	366, 608
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	3 cut(s)	20, 364, 619
PspPPI	RGGWCCY	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	3 cut(s)	230, 464, 521
RsaNI	GTAC	3 cut(s)	229, 463, 520
SaqAI	TTAA	2 cut(s)	333, 643
Sau3AI	GATC	4 cut(s)	97, 121, 390, 493
Sau96I	GGNCC	3 cut(s)	20, 364, 619
ScaI	AGTACT	2 cut(s)	464, 521
ScrFI	CCNGG	3 cut(s)	362, 368, 610
SduI	GDGCHC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	619
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	3 cut(s)	128, 137, 327
SspMI	CTAG	2 cut(s)	296, 416
StyD4I	CCNGG	3 cut(s)	360, 366, 608
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	2 cut(s)	46, 202
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	128, 137, 327
TatI	WGTACW	3 cut(s)	228, 462, 519
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	333, 643
Tru9I	TTAA	2 cut(s)	333, 643
TscAI	CASTG	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	523
VneI	GTGCAC	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	572
XspI	CTAG	2 cut(s)	296, 416
ZrmI	AGTACT	2 cut(s)	464, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.