Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Forward (+)

11930350 .. 11932418

Gene Structure 2069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1133600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTGGTGAAGGTGTACGGCCCCTTCTATGCTGCGCCGAAGCGTGTGCTGGTGTGCCTTGTTGAGAAGGAGATTGAATTTGAGACCAGCCCCATTGATCTCTTCAAGGGTGAACATAAATCTCCGGAATTTCTCAAATTACAGCCCTTTGGACAAATTCCTGTTATCCAAGATGGGGATTATACTTTGTATGAATCGCGCGCAATCATAAGGTACTACGCTGAAAAATACAAATCCCAGGGGACCGATTTACTTGGAAAGACGATTGAGGAAAGAGGTCTTGTGGAACAGTGGCTAGAGGTTGAAGCAAGCAACTATCACCCGCCACTCGACAACTTGGTCATGCACATTTTGTTTGCCTCGGCATTGGGATTTCCTTCAGACCCGAAGATCATCCAGGAGAGCGAAGAAAAGCTCGGCAAGGTGTTGGACATTTACGAGGAGCGGCTGTCGAAGAGCAAGTACTTGGCCGGTGATTTTTTCAGCCTTGCTGATCTTAGCCACCTTCCGTTCACCCACTACTTGGCCAATAGTATGGGGAAGGAGTATATGATAAGGGACAGAAAGCATGTCTCTGCTTGGTGGGATGATATTAGCAGCAGACCATCCTGGAAGAAGGTCCTCCAATTTGGTGCGCCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

215

Amino Acids

24.72

Weight (kDa)

5.73

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	6.6e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 75	2.6e-14	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	14 - 78	1.3e-10	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	115 - 202	6.8e-14	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	135 - 206	1.1e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	445
AccII	CGCG	2 cut(s)	199, 201
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	2 cut(s)	323, 445
AcoI	YGGCCR	2 cut(s)	468, 525
AcsI	RAATTY	3 cut(s)	77, 128, 156
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	3 cut(s)	17, 215, 464
AfiI	CCNNNNNNNGG	2 cut(s)	175, 523
AgsI	TTSAA	3 cut(s)	77, 106, 305
AjnI	CCWGG	3 cut(s)	237, 396, 608
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw26I	GTCTC	2 cut(s)	77, 577
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	3 cut(s)	19, 468, 525
ApeKI	GCWGC	2 cut(s)	32, 597
ApoI	RAATTY	3 cut(s)	77, 128, 156
AspLEI	GCGC	4 cut(s)	37, 201, 203, 637
AspS9I	GGNCC	3 cut(s)	20, 243, 619
AsuHPI	GGTGA	5 cut(s)	19, 122, 311, 485, 505
AvaII	GGWCC	2 cut(s)	243, 619
BalI	TGGCCA	1 cut(s)	527
BarI	GAAGNNNNNNTAC	4 cut(s)	8, 40, 446, 478
BbvI	GCAGC	2 cut(s)	19, 609
BccI	CCATC	2 cut(s)	167, 613
BceAI	ACGGC	2 cut(s)	34, 622
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	3 cut(s)	239, 398, 610
BcoDI	GTCTC	2 cut(s)	77, 577
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	3 cut(s)	33, 446, 598
BlsI	GCNGC	3 cut(s)	34, 447, 599
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	3 cut(s)	239, 398, 610
Bme18I	GGWCC	2 cut(s)	243, 619
BmgT120I	GGNCC	3 cut(s)	20, 243, 619
BmiI	GGNNCC	2 cut(s)	22, 244
BmrFI	CCNGG	3 cut(s)	239, 398, 610
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	3 cut(s)	237, 238, 360
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 523
Bse118I	RCCGGY	1 cut(s)	470
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	239, 398, 610
BseDI	CCNNGG	3 cut(s)	237, 238, 360
BseGI	GGATG	3 cut(s)	393, 592, 605
BseLI	CCNNNNNNNGG	2 cut(s)	175, 523
BsePI	GCGCGC	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	19, 609
Bsh1236I	CGCG	2 cut(s)	199, 201
BshFI	GGCC	3 cut(s)	21, 470, 527
BsiSI	CCGG	2 cut(s)	125, 471
BslFI	GGGAC	2 cut(s)	256, 572
BslI	CCNNNNNNNGG	2 cut(s)	175, 523
BsmAI	GTCTC	2 cut(s)	77, 577
BsmFI	GGGAC	2 cut(s)	256, 572
BsnI	GGCC	3 cut(s)	21, 470, 527
Bso31I	GGTCTC	1 cut(s)	77
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	97, 390, 493
BspACI	CCGC	2 cut(s)	323, 445
BspANI	GGCC	3 cut(s)	21, 470, 527
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	2 cut(s)	199, 201
BspLI	GGNNCC	2 cut(s)	22, 244
BspQI	GCTCTTC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	470
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	3 cut(s)	237, 238, 360
BssHII	GCGCGC	1 cut(s)	199
BssMI	GATC	3 cut(s)	97, 390, 493
Bst2UI	CCWGG	3 cut(s)	239, 398, 610
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	107, 449
BstC8I	GCNNGC	2 cut(s)	201, 310
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	3 cut(s)	393, 592, 605
BstFNI	CGCG	2 cut(s)	199, 201
BstHHI	GCGC	4 cut(s)	37, 201, 203, 637
BstKTI	GATC	3 cut(s)	100, 393, 496
BstMAI	GTCTC	2 cut(s)	77, 577
BstMBI	GATC	3 cut(s)	97, 390, 493
BstNI	CCWGG	3 cut(s)	239, 398, 610
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	3 cut(s)	237, 396, 608
BstUI	CGCG	2 cut(s)	199, 201
BstV1I	GCAGC	2 cut(s)	19, 609
BstXI	CCANNNNNNTGG	1 cut(s)	535
BsuRI	GGCC	3 cut(s)	21, 470, 527
BtsCI	GGATG	3 cut(s)	393, 592, 605
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	201, 310
CfoI	GCGC	4 cut(s)	37, 201, 203, 637
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	3 cut(s)	20, 243, 619
Csp6I	GTAC	3 cut(s)	16, 214, 463
CviAII	CATG	2 cut(s)	343, 569
CviQI	GTAC	3 cut(s)	16, 214, 463
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	3 cut(s)	99, 392, 495
DpnII	GATC	3 cut(s)	97, 390, 493
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	2 cut(s)	468, 525
Eam1104I	CTCTTC	2 cut(s)	107, 449
EarI	CTCTTC	2 cut(s)	107, 449
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	243, 619
Eco57I	CTGAAG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRII	CCWGG	3 cut(s)	237, 396, 608
FaeI	CATG	2 cut(s)	346, 572
FaqI	GGGAC	2 cut(s)	256, 572
FatI	CATG	2 cut(s)	342, 568
FauI	CCCGC	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	33, 446, 598
FokI	GGATG	3 cut(s)	380, 592, 599
Fsp4HI	GCNGC	3 cut(s)	33, 446, 598
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	4 cut(s)	36, 200, 202, 636
GluI	GCNGC	3 cut(s)	33, 446, 598
HaeIII	GGCC	3 cut(s)	21, 470, 527
HapII	CCGG	2 cut(s)	125, 471
HhaI	GCGC	4 cut(s)	37, 201, 203, 637
Hin1II	CATG	2 cut(s)	346, 572
Hin6I	GCGC	4 cut(s)	35, 199, 201, 635
HinP1I	GCGC	4 cut(s)	35, 199, 201, 635
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	2 cut(s)	125, 471
HphI	GGTGA	5 cut(s)	19, 122, 311, 485, 505
Hpy166II	GTNNAC	3 cut(s)	16, 113, 513
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	3 cut(s)	16, 113, 513
HpyAV	CCTTC	7 cut(s)	4, 34, 61, 387, 515, 535, 610
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	346
HpyF3I	CTNAG	1 cut(s)	497
Hsp92II	CATG	2 cut(s)	346, 572
HspAI	GCGC	4 cut(s)	35, 199, 201, 635
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	97, 390, 493
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	2 cut(s)	19, 609
MaeI	CTAG	1 cut(s)	296
MalI	GATC	3 cut(s)	99, 392, 495
MbiI	CCGCTC	1 cut(s)	445
MboI	GATC	3 cut(s)	97, 390, 493
MboII	GAAGA	5 cut(s)	94, 400, 419, 466, 625
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	5 cut(s)	77, 128, 137, 156, 626
MluNI	TGGCCA	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	6 cut(s)	262, 269, 292, 370, 433, 632
Mox20I	TGGCCA	1 cut(s)	527
MroI	TCCGGA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	1 cut(s)	643
Msp20I	TGGCCA	1 cut(s)	527
MspI	CCGG	2 cut(s)	125, 471
MspR9I	CCNGG	3 cut(s)	239, 398, 610
MvaI	CCWGG	3 cut(s)	239, 398, 610
MvnI	CGCG	2 cut(s)	199, 201
NdeII	GATC	3 cut(s)	97, 390, 493
NlaIII	CATG	2 cut(s)	346, 572
NlaIV	GGNNCC	2 cut(s)	22, 244
NmeAIII	GCCGAG	2 cut(s)	341, 396
NspI	RCATGY	1 cut(s)	572
PasI	CCCWGGG	1 cut(s)	238
PauI	GCGCGC	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	523
PfoI	TCCNGGA	2 cut(s)	396, 608
PkrI	GCNGC	3 cut(s)	34, 447, 599
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	3 cut(s)	237, 396, 608
PspGI	CCWGG	3 cut(s)	237, 396, 608
PspN4I	GGNNCC	2 cut(s)	22, 244
PspPI	GGNCC	3 cut(s)	20, 243, 619
PspPPI	RGGWCCY	1 cut(s)	619
PteI	GCGCGC	1 cut(s)	199
RsaI	GTAC	3 cut(s)	17, 215, 464
RsaNI	GTAC	3 cut(s)	16, 214, 463
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	643
SatI	GCNGC	3 cut(s)	33, 446, 598
Sau3AI	GATC	3 cut(s)	97, 390, 493
Sau96I	GGNCC	3 cut(s)	20, 243, 619
ScaI	AGTACT	1 cut(s)	464
ScrFI	CCNGG	3 cut(s)	239, 398, 610
SetI	ASST	8 cut(s)	15, 215, 280, 303, 417, 426, 507, 621
SinI	GGWCC	2 cut(s)	243, 619
Sse9I	AATT	5 cut(s)	77, 128, 137, 156, 626
SsiI	CCGC	2 cut(s)	323, 445
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	237, 396, 608
TaaI	ACNGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	330, 452
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	5 cut(s)	77, 128, 137, 156, 626
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	448
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TscAI	CASTG	1 cut(s)	296
TseI	GCWGC	2 cut(s)	32, 597
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	2 cut(s)	243, 619
XapI	RAATTY	3 cut(s)	77, 128, 156
XceI	RCATGY	1 cut(s)	572
XspI	CTAG	1 cut(s)	296
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.