Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Forward (+)

11549037 .. 11551449

Gene Structure 2413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1147400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGTGGTGGTGTATGGCCCTCTGTACGCCTCCCCAAAGCGTGTGCTGGAATGCCTTGTTGAGAAAGAGGTGGACTGTGAGACAATCCCCATTGATCTCCTCAAGGGAGAGCACAAACACCCTGATTTTCTCAAATTACAGCCATTTGGATCAGTTCCTCTCATTCAAGATAGGGATTATACTCTATATGACGCCAAGATCATTCAAGAAAGTGGGGAAAAGCTGGGAAAAGTGTTGGATATTTACGAGGAATGGTTGTCGAATAGCAAGTACTTGGCCGGTGATTTCTTCAGCCTTGCTGATCTTAGCCACCTTCCAACCTTCCATTCACTTACTACTTGGTGGCTCATATGGGGAAAAAGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

123

Amino Acids

14.04

Weight (kDa)

5.09

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	13 - 70	8.4e-09	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 71	6.3e-06	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	63 - 109	2.2e-09	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	274
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	26, 272
AgsI	TTSAA	2 cut(s)	167, 206
AjuI	GAANNNNNNNTTGG	2 cut(s)	310, 342
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	2 cut(s)	16, 276
AspS9I	GGNCC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	74
BmcAI	AGTACT	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	2 cut(s)	18, 278
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	18, 278
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	94, 149, 198, 301
BspANI	GGCC	2 cut(s)	18, 278
BspPI	GGATC	1 cut(s)	157
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssMI	GATC	4 cut(s)	94, 149, 198, 301
BssNI	GRCGYC	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	305
BstKTI	GATC	4 cut(s)	97, 152, 201, 304
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	4 cut(s)	94, 149, 198, 301
BsuRI	GGCC	2 cut(s)	18, 278
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	17
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	25, 271
CviJI	RGCY	7 cut(s)	18, 142, 223, 278, 294, 309, 346
CviKI_1	RGCY	7 cut(s)	18, 142, 223, 278, 294, 309, 346
CviQI	GTAC	2 cut(s)	25, 271
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	4 cut(s)	96, 151, 200, 303
DpnII	GATC	4 cut(s)	94, 149, 198, 301
EaeI	YGGCCR	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	274
FaiI	YATR	8 cut(s)	15, 180, 187, 189, 350, 352, 365, 367
FauNDI	CATATG	1 cut(s)	350
GsaI	CCCAGC	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	18, 278
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	167, 206
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	323, 331
HpyCH4III	ACNGT	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	305
Hsp92I	GRCGYC	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	94, 149, 198, 301
LpnPI	CCDG	4 cut(s)	32, 135, 209, 292
MalI	GATC	4 cut(s)	96, 151, 200, 303
MboI	GATC	4 cut(s)	94, 149, 198, 301
MboII	GAAGA	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	216, 341
MnlI	CCTC	6 cut(s)	30, 40, 61, 110, 168, 241
MspI	CCGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	56
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	4 cut(s)	94, 149, 198, 301
PctI	GAATGC	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	17
RsaI	GTAC	2 cut(s)	26, 272
RsaNI	GTAC	2 cut(s)	25, 271
Sau3AI	GATC	4 cut(s)	94, 149, 198, 301
Sau96I	GGNCC	1 cut(s)	17
ScaI	AGTACT	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	4 cut(s)	72, 225, 315, 323
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	260
TasI	AATT	1 cut(s)	134
TatI	WGTACW	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.