Rorug02G0432200
ERF Family

Belongs to the GST superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
55359474 .. 55362098
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0432200.1

Sequence Viewer

Length: 1140 bp
ATGGGACATCACTCATGCTGCAACAAACAGAAAGTGAAGAGAGGGCTATGGTCCCCAGAAGAAGATGAAAAGCTCATAAACTACATTACGAATTACGGCCATGGCTGCTGGAGCTCAGTTCCTAAACTTGCAGGTCTCCAAAGATGTGGAAAGAGCTGCAGACTGAGATGGATAAATTATCTGAGACCCGACTTGAAACGTGGGAGCTTCTCTTCCCAGGAAGCTGCACTCATCATTCAACTCCATAGCATTTTAGGCAACAGATGGGCTCAGATAGCCAAGCACCTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAACTCGAGCATAAAGAAGAAGCTTATCCCCCATGAAGTCATTCCAGCTTTGGTCTCATTCTCTCATTTTCTTAACCCTAGTAGTGCTGGTTCTGATCAGGAAAGTTTCTTCACTACTCTAATCACAAACCCTAATTTCGGTCTTCAACAAGAACAGCCTTACCTTCCCGTTCCAACACCATTGCCACCATCTAGTTTCTACCATGGTGATCATAGTATTTTCAAGTTAGACTACACCAATTATAGTTCCAACCGCCTTCATTTTCCAACCCCCATCCAATTACCATCAAACTATTCATCGTCATATGATTCGTCATGGTCATTAGGTTATCAACCCCATCTATTTGATTCGAATCATCAACAAGATCAAATTCTCAACAATATTGAAGTTGCTCCACATTTTAATATTGGAAATGAGCTTATGGTTCCGAGTGTGGCTTCTCTACCAGGTTATGATCATGAGAATGTATCAGTTGTACCCACAATGCCTCAGTCTTGTGAGATCAATATTGATGGCAGTGCTTGCAGAGCAATGCCATTTGATCCACCTGATAATCATCCTCCACAAGAACTTGACTCACTTGCAAAAGTTCCATCGTGTTTCGGTCCATTTGGTGATCATGGCTCTTATAATCCTTTCGATCTGCAGCTTCCCTCCAATCAGCTGGAATTAGTTGATCCCGTCATATCATCGTTGCCAATGTTATCACAGCCGTCTCCGTCATCCGCGTCTTCATCCTTGTTACCACTACCAAGTAGCCAATTATTCATCACGAACCCTAATGTTCTTTCAAGCTTGGGAAGCCTGGCTAGCTAG

Protein Analysis

379

Amino Acids

42.05

Weight (kDa)

6.12

Isoelectric Point (pI)

68.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 74 3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 110 1.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 115 4.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 954
Acc36I ACCTGC 1 cut(s) 122
AccII CGCG 1 cut(s) 1052
AciI CCGC 2 cut(s) 577, 1050
AclWI GGATC 2 cut(s) 860, 995
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 693
AfaI GTAC 1 cut(s) 801
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 6 cut(s) 196, 239, 470, 547, 710, 1116
AjnI CCWGG 4 cut(s) 216, 289, 769, 1128
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 4 cut(s) 140, 178, 382, 1044
AlwI GGATC 2 cut(s) 860, 995
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 5 cut(s) 18, 105, 156, 224, 970
ApoI RAATTY 1 cut(s) 693
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 51, 929
AsuHPI GGTGA 2 cut(s) 542, 950
AsuII TTCGAA 1 cut(s) 674
AsuNHI GCTAGC 1 cut(s) 1133
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 2 cut(s) 51, 929
BanII GRGCYC 2 cut(s) 116, 271
BbsI GAAGAC 2 cut(s) 458, 1047
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 5 cut(s) 5, 92, 143, 211, 982
BccI CCATC 8 cut(s) 162, 258, 520, 605, 616, 669, 830, 925
BceAI ACGGC 2 cut(s) 112, 1021
BciT130I CCWGG 4 cut(s) 218, 291, 771, 1130
BclI TGATCA 4 cut(s) 418, 532, 778, 940
BcoDI GTCTC 4 cut(s) 140, 178, 382, 1044
BfaI CTAG 4 cut(s) 402, 516, 1134, 1138
BfmI CTRYAG 2 cut(s) 157, 968
BfuAI ACCTGC 1 cut(s) 122
BisI GCNGC 5 cut(s) 19, 106, 157, 225, 971
BlsI GCNGC 5 cut(s) 20, 107, 158, 226, 972
Bme1390I CCNGG 4 cut(s) 218, 291, 771, 1130
Bme18I GGWCC 2 cut(s) 51, 929
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 51, 929
BmiI GGNNCC 2 cut(s) 53, 750
BmrFI CCNGG 4 cut(s) 218, 291, 771, 1130
BmtI GCTAGC 1 cut(s) 1137
BpiI GAAGAC 2 cut(s) 458, 1047
BpmI CTGGAG 1 cut(s) 130
Bpu14I TTCGAA 1 cut(s) 674
BsaBI GATNNNNATC 2 cut(s) 675, 879
BsaI GGTCTC 3 cut(s) 140, 178, 382
BsaJI CCNNGG 3 cut(s) 100, 216, 526
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse3DI GCAATG 2 cut(s) 503, 861
Bse8I GATNNNNATC 2 cut(s) 675, 879
BseBI CCWGG 4 cut(s) 218, 291, 771, 1130
BseDI CCNNGG 3 cut(s) 100, 216, 526
BseGI GGATG 4 cut(s) 597, 880, 1046, 1058
BseJI GATNNNNATC 2 cut(s) 675, 879
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 2 cut(s) 503, 861
BseMII CTCAG 5 cut(s) 129, 155, 173, 284, 827
BseXI GCAGC 5 cut(s) 5, 92, 143, 211, 982
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 1052
BshFI GGCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 328
BslFI GGGAC 2 cut(s) 18, 37
BslI CCNNNNNNNGG 1 cut(s) 461
BsmAI GTCTC 4 cut(s) 140, 178, 382, 1044
BsmBI CGTCTC 1 cut(s) 1044
BsmFI GGGAC 2 cut(s) 18, 37
BsnI GGCC 1 cut(s) 99
Bso31I GGTCTC 3 cut(s) 140, 178, 382
BsoBI CYCGRG 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 674
Bsp1286I GDGCHC 2 cut(s) 116, 271
Bsp143I GATC 9 cut(s) 418, 532, 688, 778, 825, 865, 940, 964, 1000
Bsp19I CCATGG 2 cut(s) 100, 526
BspACI CCGC 2 cut(s) 577, 1050
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 5 cut(s) 128, 156, 174, 283, 826
BspFNI CGCG 1 cut(s) 1052
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 2 cut(s) 53, 750
BspMAI CTGCAG 2 cut(s) 161, 972
BspMI ACCTGC 1 cut(s) 122
BspOI GCTAGC 1 cut(s) 1137
BspPI GGATC 2 cut(s) 860, 995
BspT104I TTCGAA 1 cut(s) 674
BspTNI GGTCTC 3 cut(s) 140, 178, 382
BsrDI GCAATG 2 cut(s) 503, 861
BssECI CCNNGG 3 cut(s) 100, 216, 526
BssMI GATC 9 cut(s) 418, 532, 688, 778, 825, 865, 940, 964, 1000
BssT1I CCWWGG 2 cut(s) 100, 526
Bst2UI CCWGG 4 cut(s) 218, 291, 771, 1130
Bst6I CTCTTC 2 cut(s) 32, 217
BstAPI GCANNNNNTGC 1 cut(s) 846
BstBI TTCGAA 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 847, 1135
BstDEI CTNAG 5 cut(s) 115, 164, 182, 270, 813
BstDSI CCRYGG 2 cut(s) 100, 526
BstF5I GGATG 4 cut(s) 597, 880, 1046, 1058
BstFNI CGCG 1 cut(s) 1052
BstKTI GATC 9 cut(s) 421, 535, 691, 781, 828, 868, 943, 967, 1003
BstMAI GTCTC 4 cut(s) 140, 178, 382, 1044
BstMBI GATC 9 cut(s) 418, 532, 688, 778, 825, 865, 940, 964, 1000
BstMWI GCNNNNNNNGC 8 cut(s) 105, 111, 255, 275, 846, 851, 1125, 1134
BstNI CCWGG 4 cut(s) 218, 291, 771, 1130
BstSCI CCNGG 4 cut(s) 216, 289, 769, 1128
BstSFI CTRYAG 2 cut(s) 157, 968
BstUI CGCG 1 cut(s) 1052
BstV1I GCAGC 5 cut(s) 5, 92, 143, 211, 982
BstV2I GAAGAC 2 cut(s) 458, 1047
BstXI CCANNNNNNTGG 2 cut(s) 146, 988
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 100, 526
BtsCI GGATG 4 cut(s) 597, 880, 1046, 1058
BtsI GCAGTG 1 cut(s) 847
BtsIMutI CAGTG 1 cut(s) 847
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 847, 1135
CciI TCATGA 1 cut(s) 781
Cfr13I GGNCC 2 cut(s) 51, 929
CseI GACGC 1 cut(s) 1041
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 1 cut(s) 800
CviAII CATG 7 cut(s) 15, 101, 356, 527, 639, 782, 944
CviQI GTAC 1 cut(s) 800
DdeI CTNAG 5 cut(s) 115, 164, 182, 270, 813
DpnI GATC 9 cut(s) 420, 534, 690, 780, 827, 867, 942, 966, 1002
DpnII GATC 9 cut(s) 418, 532, 688, 778, 825, 865, 940, 964, 1000
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 32, 217
EarI CTCTTC 2 cut(s) 32, 217
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 100, 526
Eco24I GRGCYC 2 cut(s) 116, 271
Eco31I GGTCTC 3 cut(s) 140, 178, 382
Eco47I GGWCC 2 cut(s) 51, 929
Eco53kI GAGCTC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 114
EcoRII CCWGG 4 cut(s) 216, 289, 769, 1128
EcoT14I CCWWGG 2 cut(s) 100, 526
EcoT38I GRGCYC 2 cut(s) 116, 271
ErhI CCWWGG 2 cut(s) 100, 526
Esp3I CGTCTC 1 cut(s) 1044
FaeI CATG 7 cut(s) 18, 104, 359, 530, 642, 785, 947
FaqI GGGAC 2 cut(s) 18, 37
FatI CATG 7 cut(s) 14, 100, 355, 526, 638, 781, 943
FauNDI CATATG 1 cut(s) 628
FbaI TGATCA 4 cut(s) 418, 532, 778, 940
Fnu4HI GCNGC 5 cut(s) 19, 106, 157, 225, 971
FokI GGATG 4 cut(s) 584, 867, 1033, 1045
FriOI GRGCYC 2 cut(s) 116, 271
Fsp4HI GCNGC 5 cut(s) 19, 106, 157, 225, 971
FspBI CTAG 4 cut(s) 402, 516, 1134, 1138
GluI GCNGC 5 cut(s) 19, 106, 157, 225, 971
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 99
HgaI GACGC 1 cut(s) 1041
Hin1II CATG 7 cut(s) 18, 104, 359, 530, 642, 785, 947
HindIII AAGCTT 2 cut(s) 344, 1117
HinfI GANTC 4 cut(s) 632, 671, 676, 899
HphI GGTGA 2 cut(s) 542, 950
Hpy188I TCNGA 4 cut(s) 183, 273, 418, 753
Hpy188III TCNNGA 3 cut(s) 422, 782, 1096
HpyAV CCTTC 2 cut(s) 497, 590
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 7 cut(s) 21, 131, 159, 227, 849, 908, 970
HpyF10VI GCNNNNNNNGC 8 cut(s) 105, 111, 255, 275, 846, 851, 1125, 1134
HpyF3I CTNAG 5 cut(s) 115, 164, 182, 270, 813
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 7 cut(s) 18, 104, 359, 530, 642, 785, 947
Ksp22I TGATCA 4 cut(s) 418, 532, 778, 940
Kzo9I GATC 9 cut(s) 418, 532, 688, 778, 825, 865, 940, 964, 1000
LmnI GCTCC 3 cut(s) 111, 204, 721
Lsp1109I GCAGC 5 cut(s) 5, 92, 143, 211, 982
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 4 cut(s) 402, 516, 1134, 1138
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 1 cut(s) 1065
MalI GATC 9 cut(s) 420, 534, 690, 780, 827, 867, 942, 966, 1002
MboI GATC 9 cut(s) 418, 532, 688, 778, 825, 865, 940, 964, 1000
MhlI GDGCHC 2 cut(s) 116, 271
MluCI AATT 8 cut(s) 91, 175, 457, 562, 602, 693, 992, 1085
MlyI GAGTC 1 cut(s) 893
MmeI TCCRAC 3 cut(s) 521, 597, 614
MnlI CCTC 4 cut(s) 35, 822, 894, 988
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 396, 726
MslI CAYNNNNRTG 1 cut(s) 786
MspA1I CMGCKG 1 cut(s) 988
MspR9I CCNGG 4 cut(s) 218, 291, 771, 1130
MvaI CCWGG 4 cut(s) 218, 291, 771, 1130
MvnI CGCG 1 cut(s) 1052
MwoI GCNNNNNNNGC 8 cut(s) 105, 111, 255, 275, 846, 851, 1125, 1134
NcoI CCATGG 2 cut(s) 100, 526
NdeI CATATG 1 cut(s) 628
NdeII GATC 9 cut(s) 418, 532, 688, 778, 825, 865, 940, 964, 1000
NheI GCTAGC 1 cut(s) 1133
NlaIII CATG 7 cut(s) 18, 104, 359, 530, 642, 785, 947
NlaIV GGNNCC 2 cut(s) 53, 750
NspV TTCGAA 1 cut(s) 674
PaeR7I CTCGAG 1 cut(s) 328
PagI TCATGA 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 632, 671, 676
PkrI GCNGC 5 cut(s) 20, 107, 158, 226, 972
PleI GAGTC 1 cut(s) 893
PpsI GAGTC 1 cut(s) 893
PsiI TTATAA 1 cut(s) 954
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 4 cut(s) 216, 289, 769, 1128
PspGI CCWGG 4 cut(s) 216, 289, 769, 1128
PspN4I GGNNCC 2 cut(s) 53, 750
PspPI GGNCC 2 cut(s) 51, 929
PspXI VCTCGAGB 1 cut(s) 328
PsrI GAACNNNNNNTAC 2 cut(s) 397, 429
PstI CTGCAG 2 cut(s) 161, 972
PvuII CAGCTG 1 cut(s) 988
RsaI GTAC 1 cut(s) 801
RsaNI GTAC 1 cut(s) 800
RseI CAYNNNNRTG 1 cut(s) 786
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 396, 726
SatI GCNGC 5 cut(s) 19, 106, 157, 225, 971
Sau3AI GATC 9 cut(s) 418, 532, 688, 778, 825, 865, 940, 964, 1000
Sau96I GGNCC 2 cut(s) 51, 929
SchI GAGTC 1 cut(s) 893
ScrFI CCNGG 4 cut(s) 218, 291, 771, 1130
SduI GDGCHC 2 cut(s) 116, 271
SexAI ACCWGGT 1 cut(s) 769
SfcI CTRYAG 2 cut(s) 157, 968
Sfr274I CTCGAG 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 674
SinI GGWCC 2 cut(s) 51, 929
SlaI CTCGAG 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 8 cut(s) 91, 175, 457, 562, 602, 693, 992, 1085
SsiI CCGC 2 cut(s) 577, 1050
SspI AATATT 3 cut(s) 706, 730, 832
SspMI CTAG 4 cut(s) 402, 516, 1134, 1138
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 4 cut(s) 216, 289, 769, 1128
StyI CCWWGG 2 cut(s) 100, 526
TaiI ACGT 1 cut(s) 202
TaqI TCGA 3 cut(s) 329, 674, 963
TaqII GACCGA 2 cut(s) 452, 917
TasI AATT 8 cut(s) 91, 175, 457, 562, 602, 693, 992, 1085
TfiI GAWTC 3 cut(s) 632, 671, 676
Tru1I TTAA 2 cut(s) 396, 726
Tru9I TTAA 2 cut(s) 396, 726
TscAI CASTG 1 cut(s) 847
TseI GCWGC 5 cut(s) 18, 105, 156, 224, 970
TspDTI ATGAA 7 cut(s) 81, 321, 372, 572, 609, 1047, 1081
TspGWI ACGGA 1 cut(s) 1032
TspRI CASTG 1 cut(s) 847
VpaK11BI GGWCC 2 cut(s) 51, 929
XapI RAATTY 1 cut(s) 693
XhoI CTCGAG 1 cut(s) 328
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 4 cut(s) 402, 516, 1134, 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.