Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Forward (+)

55343913 .. 55344366

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0432000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTACGAAAGGGATCCATGGGGCGGCCCGCTGGAGATCAACACGGCGGACTCGGCCACCGACGACGACCGCAGCCGGAACCTGCAGGACCTCGACCGGGCGGCGCTGTCGTCTAGGCCGCTCGACGAGACGCAACAGAGCTGGCTGCTGGGCCCCACCGAGGAGCAAAAGAAGAAGAAGTACGTGGATCTGGGATGCGTCATCGTCAGCCGCAAGATCTTTATCTGGACGGTAAGGACGCTCCTCCTCTCCGGCTTGCTCGCCGGACTGATCGTCCTCATCGTCAAGACCGTGCCGCGTCACCACCATGCCAAGCCTCCTCCGGACAACTACACTCTCGCTCTCCACAAGGCTCTCATGTTCTTCAACGCTCAGAAATGTCAGTTTATTTTTGAGTCTGGGCTAATTTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

138

Amino Acids

15.74

Weight (kDa)

7.81

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	8 cut(s)	24, 29, 47, 70, 101, 119, 211, 296
AclWI	GGATC	3 cut(s)	8, 21, 195
AcoI	YGGCCR	1 cut(s)	54
AfaI	GTAC	2 cut(s)	5, 182
AfiI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
AgsI	TTSAA	1 cut(s)	367
AhdI	GACNNNNNGTC	1 cut(s)	272
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	8, 21, 195
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	4 cut(s)	25, 54, 116, 151
ApaI	GGGCCC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	72, 145
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	4 cut(s)	26, 88, 151, 152
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	13
BanII	GRGCYC	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BbvI	GCAGC	2 cut(s)	84, 132
BceAI	ACGGC	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	7 cut(s)	25, 73, 102, 119, 146, 211, 296
BlsI	GCNGC	7 cut(s)	26, 74, 103, 120, 147, 212, 297
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	88
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	4 cut(s)	26, 88, 151, 152
BmiI	GGNNCC	4 cut(s)	15, 80, 153, 154
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	17, 159
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 97, 160
Bse8I	GATNNNNATC	1 cut(s)	221
BseAI	TCCGGA	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	17, 159
BseGI	GGATG	1 cut(s)	200
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	4 cut(s)	176, 233, 236, 309
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	84, 132
BseYI	CCCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	298
Bsh1285I	CGRYCG	2 cut(s)	70, 97
BshFI	GGCC	4 cut(s)	27, 56, 118, 153
BsiEI	CGRYCG	2 cut(s)	70, 97
BsiSI	CCGG	5 cut(s)	76, 97, 252, 264, 323
BslI	CCNNNNNNNGG	3 cut(s)	23, 97, 160
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	4 cut(s)	27, 56, 118, 153
Bsp120I	GGGCCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	13, 36, 187, 216, 270
Bsp19I	CCATGG	1 cut(s)	17
BspACI	CCGC	8 cut(s)	24, 29, 47, 70, 101, 119, 211, 296
BspANI	GGCC	4 cut(s)	27, 56, 118, 153
BspCNI	CTCAG	1 cut(s)	385
BspEI	TCCGGA	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	15, 80, 153, 154
BspMAI	CTGCAG	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	3 cut(s)	8, 21, 195
BsrBI	CCGCTC	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	17, 159
BssMI	GATC	5 cut(s)	13, 36, 187, 216, 270
BssT1I	CCWWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	232, 292
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	4 cut(s)	29, 143, 257, 261
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	17
BstF5I	GGATG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	5 cut(s)	16, 39, 190, 219, 273
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	5 cut(s)	13, 36, 187, 216, 270
BstMCI	CGRYCG	2 cut(s)	70, 97
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	83
BstSLI	GKGCMC	1 cut(s)	155
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	84, 132
BstX2I	RGATCY	3 cut(s)	13, 187, 216
BstYI	RGATCY	3 cut(s)	13, 187, 216
BsuRI	GGCC	4 cut(s)	27, 56, 118, 153
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	200
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	4 cut(s)	29, 143, 257, 261
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	4 cut(s)	26, 88, 151, 152
CseI	GACGC	4 cut(s)	139, 187, 247, 287
Csp6I	GTAC	2 cut(s)	4, 181
CviAII	CATG	3 cut(s)	18, 308, 358
CviQI	GTAC	2 cut(s)	4, 181
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	5 cut(s)	15, 38, 189, 218, 272
DpnII	GATC	5 cut(s)	13, 36, 187, 216, 270
DriI	GACNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	54
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	88
EcoO109I	RGGNCCY	2 cut(s)	88, 152
EcoT14I	CCWWGG	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	17
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	3 cut(s)	21, 311, 361
FaiI	YATR	3 cut(s)	19, 309, 359
FatI	CATG	3 cut(s)	17, 307, 357
FauI	CCCGC	1 cut(s)	36
Fnu4HI	GCNGC	7 cut(s)	25, 73, 102, 119, 146, 211, 296
FokI	GGATG	1 cut(s)	207
FriOI	GRGCYC	1 cut(s)	155
Fsp4HI	GCNGC	7 cut(s)	25, 73, 102, 119, 146, 211, 296
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	7 cut(s)	25, 73, 102, 119, 146, 211, 296
GsaI	CCCAGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	4 cut(s)	27, 56, 118, 153
HapII	CCGG	5 cut(s)	76, 97, 252, 264, 323
HgaI	GACGC	4 cut(s)	139, 187, 247, 287
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	21, 311, 361
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	2 cut(s)	50, 395
HpaII	CCGG	5 cut(s)	76, 97, 252, 264, 323
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	3 cut(s)	226, 286, 323
Hpy99I	CGWCG	3 cut(s)	65, 68, 128
HpyCH4III	ACNGT	2 cut(s)	232, 292
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	21, 311, 361
HspAI	GCGC	1 cut(s)	104
Kpn2I	TCCGGA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	13, 36, 187, 216, 270
LmnI	GCTCC	2 cut(s)	163, 246
Lsp1109I	GCAGC	2 cut(s)	84, 132
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	5 cut(s)	15, 38, 189, 218, 272
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	5 cut(s)	13, 36, 187, 216, 270
MboII	GAAGA	3 cut(s)	184, 187, 355
MflI	RGATCY	3 cut(s)	13, 187, 216
MhlI	GDGCHC	1 cut(s)	155
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	44, 404
MnlI	CCTC	7 cut(s)	101, 154, 254, 257, 287, 327, 330
MroI	TCCGGA	1 cut(s)	322
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	5 cut(s)	76, 97, 252, 264, 323
MspR9I	CCNGG	1 cut(s)	98
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	17
NdeII	GATC	5 cut(s)	13, 36, 187, 216, 270
NlaIII	CATG	3 cut(s)	21, 311, 361
NlaIV	GGNNCC	4 cut(s)	15, 80, 153, 154
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 288
PkrI	GCNGC	7 cut(s)	26, 74, 103, 120, 147, 212, 297
PleI	GAGTC	2 cut(s)	44, 403
PpsI	GAGTC	2 cut(s)	44, 403
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	148
PspN4I	GGNNCC	4 cut(s)	15, 80, 153, 154
PspOMI	GGGCCC	1 cut(s)	151
PspPI	GGNCC	4 cut(s)	26, 88, 151, 152
PspPPI	RGGWCCY	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	3 cut(s)	13, 187, 216
RsaI	GTAC	2 cut(s)	5, 182
RsaNI	GTAC	2 cut(s)	4, 181
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	7 cut(s)	25, 73, 102, 119, 146, 211, 296
Sau3AI	GATC	5 cut(s)	13, 36, 187, 216, 270
Sau96I	GGNCC	4 cut(s)	26, 88, 151, 152
SbfI	CCTGCAGG	1 cut(s)	87
SchI	GAGTC	2 cut(s)	44, 404
ScrFI	CCNGG	1 cut(s)	98
SdaI	CCTGCAGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	4 cut(s)	84, 93, 143, 186
SfaNI	GCATC	1 cut(s)	185
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse8387I	CCTGCAGG	1 cut(s)	87
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	8 cut(s)	24, 29, 47, 70, 101, 119, 211, 296
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	17
TaaI	ACNGT	2 cut(s)	232, 292
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	93, 123
TasI	AATT	1 cut(s)	405
TauI	GCSGC	5 cut(s)	27, 104, 121, 213, 298
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	2 cut(s)	72, 145
Tsp45I	GTSAC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	88
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.