Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Forward (+)

11942168 .. 11946015

Gene Structure 3848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1133800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTGGTGAAGGTGTATGGGCCTCTGTACGCCGCCCCAAAGCGTGTGCTGGTATGCCTTGTTGAGAAAGAGGTTGACTTTGAGACAGTCCCCATTGATCTTCTCAAGGGAGAGAACAAACACCCTGATTTCCTCAAGTTACAGCCATTTGGAACAGTTCCTCTCATTCAAGATGGGGATTATACTCTATATGAATCACGTGCAATCATGAGGTACTACGCAGAAAAATATAAGTCACAAGGGACTGATTTGCTGGGAAAGACAATTGAGGAAAGAGGGCTTGTGGAACAATGGCTGGAAGTTGAAGCACACAACTTCCAGCCACCAATCTACAACTTGGTCGTTCACATTCTCTTTTCCCCAGTTTTGGGTTTTCCTTCAGACCCCAAGATCTTACAAGAGAGTGAAGAAAAGCTGGGAAAAGTGCTGGACATTTACGAGGAGCAACTGTCGAAATGCAAGTACTTGGCCGGTGATTTCTTCAGCCTTGCTGATCTTAGCCACCTTCCATTCACTCACTTCTTGGTGGCTAATATGGGGAAGGAGTATATGATCAGGGACAGAAAGCATGTCTCTGCATGGTGGGATGACATTAGCAACAGACCATCTTGGAAGAGGGTCCTACAGTTTGGTGACCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

215

Amino Acids

24.81

Weight (kDa)

5.55

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	3.3e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 75	5.4e-13	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	14 - 78	6e-10	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	118 - 202	2.2e-13	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	468
AcuI	CTGAAG	2 cut(s)	363, 466
AcvI	CACGTG	1 cut(s)	200
AfaI	GTAC	3 cut(s)	29, 215, 464
AfiI	CCNNNNNNNGG	2 cut(s)	367, 368
AgsI	TTSAA	2 cut(s)	170, 305
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw26I	GTCTC	2 cut(s)	77, 577
AoxI	GGCC	2 cut(s)	20, 468
AspS9I	GGNCC	2 cut(s)	20, 619
AsuHPI	GGTGA	3 cut(s)	19, 485, 644
AvaII	GGWCC	1 cut(s)	619
BbrPI	CACGTG	1 cut(s)	200
BccI	CCATC	2 cut(s)	167, 613
BclI	TGATCA	1 cut(s)	552
BcoDI	GTCTC	2 cut(s)	77, 577
BfmI	CTRYAG	1 cut(s)	623
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmcAI	AGTACT	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	619
BmgT120I	GGNCC	2 cut(s)	20, 619
BmiI	GGNNCC	1 cut(s)	620
BmrI	ACTGGG	1 cut(s)	356
BmuI	ACTGGG	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	89, 119
BsaAI	YACGTR	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 368
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	2 cut(s)	367, 368
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	1 cut(s)	455
BseYI	CCCAGC	2 cut(s)	253, 415
BshFI	GGCC	2 cut(s)	22, 470
BsiSI	CCGG	1 cut(s)	471
BslFI	GGGAC	3 cut(s)	74, 256, 572
BslI	CCNNNNNNNGG	2 cut(s)	367, 368
BsmAI	GTCTC	2 cut(s)	77, 577
BsmFI	GGGAC	3 cut(s)	74, 256, 572
BsnI	GGCC	2 cut(s)	22, 470
Bsp143I	GATC	4 cut(s)	97, 390, 493, 552
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	22, 470
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	470
BssMI	GATC	4 cut(s)	97, 390, 493, 552
Bst4CI	ACNGT	4 cut(s)	88, 157, 450, 627
Bst6I	CTCTTC	1 cut(s)	608
BstBAI	YACGTR	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	497
BstEII	GGTNACC	1 cut(s)	632
BstF5I	GGATG	1 cut(s)	592
BstKTI	GATC	4 cut(s)	100, 393, 496, 555
BstMAI	GTCTC	2 cut(s)	77, 577
BstMBI	GATC	4 cut(s)	97, 390, 493, 552
BstNSI	RCATGY	1 cut(s)	572
BstPI	GGTNACC	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	623
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	22, 470
BtsCI	GGATG	1 cut(s)	592
CciI	TCATGA	1 cut(s)	207
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	20, 619
Csp6I	GTAC	3 cut(s)	28, 214, 463
CviAII	CATG	3 cut(s)	208, 569, 579
CviQI	GTAC	3 cut(s)	28, 214, 463
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	4 cut(s)	99, 392, 495, 554
DpnII	GATC	4 cut(s)	97, 390, 493, 552
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	2 cut(s)	363, 466
Eco72I	CACGTG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	632
EcoO109I	RGGNCCY	1 cut(s)	619
EcoO65I	GGTNACC	1 cut(s)	632
FaeI	CATG	3 cut(s)	211, 572, 582
FaqI	GGGAC	3 cut(s)	74, 256, 572
FatI	CATG	3 cut(s)	207, 568, 578
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	2 cut(s)	257, 419
HaeIII	GGCC	2 cut(s)	22, 470
HapII	CCGG	1 cut(s)	471
Hin1II	CATG	3 cut(s)	211, 572, 582
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	3 cut(s)	19, 485, 644
Hpy166II	GTNNAC	2 cut(s)	76, 346
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	2 cut(s)	170, 208
Hpy8I	GTNNAC	2 cut(s)	76, 346
HpyAV	CCTTC	4 cut(s)	4, 387, 515, 535
HpyCH4III	ACNGT	4 cut(s)	88, 157, 450, 627
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	203, 459, 578
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	3 cut(s)	211, 572, 582
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	4 cut(s)	97, 390, 493, 552
LmnI	GCTCC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	3 cut(s)	138, 234, 632
MalI	GATC	4 cut(s)	99, 392, 495, 554
MboI	GATC	4 cut(s)	97, 390, 493, 552
MboII	GAAGA	4 cut(s)	92, 419, 472, 625
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	1 cut(s)	390
MluCI	AATT	1 cut(s)	264
MnlI	CCTC	9 cut(s)	33, 64, 143, 171, 204, 262, 269, 433, 609
MseI	TTAA	1 cut(s)	643
MspI	CCGG	1 cut(s)	471
MunI	CAATTG	1 cut(s)	264
NdeII	GATC	4 cut(s)	97, 390, 493, 552
NlaIII	CATG	3 cut(s)	211, 572, 582
NlaIV	GGNNCC	1 cut(s)	620
NmuCI	GTSAC	2 cut(s)	234, 632
NspI	RCATGY	1 cut(s)	572
PagI	TCATGA	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	34
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
PspCI	CACGTG	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	632
PspFI	CCCAGC	2 cut(s)	253, 415
PspN4I	GGNNCC	1 cut(s)	620
PspPI	GGNCC	2 cut(s)	20, 619
PspPPI	RGGWCCY	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	390
RsaI	GTAC	3 cut(s)	29, 215, 464
RsaNI	GTAC	3 cut(s)	28, 214, 463
SaqAI	TTAA	1 cut(s)	643
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	4 cut(s)	97, 390, 493, 552
Sau96I	GGNCC	2 cut(s)	20, 619
ScaI	AGTACT	1 cut(s)	464
SetI	ASST	6 cut(s)	15, 75, 202, 215, 417, 507
SfcI	CTRYAG	1 cut(s)	623
SinI	GGWCC	1 cut(s)	619
SmlI	CTYRAG	2 cut(s)	104, 134
SmoI	CTYRAG	2 cut(s)	104, 134
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	33
TaaI	ACNGT	4 cut(s)	88, 157, 450, 627
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	452
TasI	AATT	1 cut(s)	264
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TseFI	GTSAC	2 cut(s)	234, 632
Tsp45I	GTSAC	2 cut(s)	234, 632
TspDTI	ATGAA	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	619
XceI	RCATGY	1 cut(s)	572
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.