Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Forward (+)

4995997 .. 4997377

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGGTAAAGGTGTATGGCCCTGTATACCCTTCGCCGAAGCGTGTGCTAGTGTGCCTTGTTGAGAAGGAGATTGATTTTGAGACCATCCCCATGGATATATTCAAGGGTGAACAAAGAAATCCTGAGTTTCTCAAATTACAGCCCTTTGGACAAGTTCCTGTCATACAAGATGGAGATTATACATTATTTGAATCACGTGCAATCATAAGGTACTATGCAGAAAAATATAAGTCCCAAGGGACTGAGTTATTAGGAAAGACGATGCAGGAAAGAGGTCTTGTGGAACAGTGGCTGGAGGTTGAAGCAAGCAACTATCACCAGCCGCTCGACAACATAGTCACGCACATTTTGTTTGCATCAGCGATGGGAATTTCTTCAGACCCGAAGATAATCCAGGAGAGTGAAGAGAAGGTCGGCAAGGTGTTGGACATTTACGAGGAGAGGCTGTCGAAGAGCAAGTACTTGGCCGGTGATTTTTTCAGCCTTGCTGATCTTAGCCACCTTCCGTTCACCCACTACTTGGCAAATAGTATGGGGAAGGAGTATATGATAAGGGACAGAAAGCATGTCTCTGCTTGGTGGGATGATATTAGCAGCAGACCATCTTGGAAGAAGGTTCTCCAGTTTGGTGAATGCAACGAGTGTATATGTCTGCCTCGCAATATTGTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

226

Amino Acids

26.02

Weight (kDa)

5.62

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	363
AcvI	CACGTG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	215, 464
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	106, 194, 305
AjnI	CCWGG	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	77, 577
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	19, 468
ApeKI	GCWGC	1 cut(s)	597
ApoI	RAATTY	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	5 cut(s)	122, 311, 485, 505, 644
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
BbrPI	CACGTG	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	4 cut(s)	95, 167, 361, 613
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	77, 577
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	2 cut(s)	326, 598
BlsI	GCNGC	2 cut(s)	327, 599
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	2 cut(s)	255, 368
BpmI	CTGGAG	2 cut(s)	317, 608
BsaAI	YACGTR	2 cut(s)	200, 675
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	93, 238
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse118I	RCCGGY	1 cut(s)	470
Bse1I	ACTGG	1 cut(s)	625
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	93, 238
BseGI	GGATG	2 cut(s)	87, 592
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	117, 237
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	609
BshFI	GGCC	2 cut(s)	21, 470
BsiSI	CCGG	1 cut(s)	471
BslFI	GGGAC	3 cut(s)	220, 256, 572
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	2 cut(s)	77, 577
BsmFI	GGGAC	3 cut(s)	220, 256, 572
BsmI	GAATGC	1 cut(s)	641
BsnI	GGCC	2 cut(s)	21, 470
Bso31I	GGTCTC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	493
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	2 cut(s)	21, 470
BspCNI	CTCAG	2 cut(s)	118, 238
BspQI	GCTCTTC	1 cut(s)	449
BspTNI	GGTCTC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	93, 238
BssMI	GATC	1 cut(s)	493
BssNAI	GTATAC	1 cut(s)	28
BssT1I	CCWWGG	2 cut(s)	93, 238
Bst1107I	GTATAC	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	402, 449
BstBAI	YACGTR	2 cut(s)	200, 675
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	126, 246, 497
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	87, 592
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	2 cut(s)	77, 577
BstMBI	GATC	1 cut(s)	493
BstNI	CCWGG	1 cut(s)	398
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	609
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstZ17I	GTATAC	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	21, 470
BtgI	CCRYGG	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	87, 592
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	310
CaiI	CAGNNNCTG	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	214, 463
CviAII	CATG	2 cut(s)	94, 569
CviJI	RGCY	8 cut(s)	21, 145, 295, 325, 448, 470, 486, 501
CviKI_1	RGCY	8 cut(s)	21, 145, 295, 325, 448, 470, 486, 501
CviQI	GTAC	2 cut(s)	214, 463
DdeI	CTNAG	3 cut(s)	126, 246, 497
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	468
Eam1104I	CTCTTC	2 cut(s)	402, 449
EarI	CTCTTC	2 cut(s)	402, 449
Eco130I	CCWWGG	2 cut(s)	93, 238
Eco31I	GGTCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	363
Eco72I	CACGTG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	2 cut(s)	93, 238
ErhI	CCWWGG	2 cut(s)	93, 238
FaeI	CATG	2 cut(s)	97, 572
FaqI	GGGAC	3 cut(s)	220, 256, 572
FatI	CATG	2 cut(s)	93, 568
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	326, 598
FokI	GGATG	2 cut(s)	74, 599
Fsp4HI	GCNGC	2 cut(s)	326, 598
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	2 cut(s)	326, 598
GsuI	CTGGAG	2 cut(s)	317, 608
HaeIII	GGCC	2 cut(s)	21, 470
HapII	CCGG	1 cut(s)	471
Hin1II	CATG	2 cut(s)	97, 572
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	5 cut(s)	122, 311, 485, 505, 644
Hpy166II	GTNNAC	3 cut(s)	28, 113, 513
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	3 cut(s)	28, 113, 513
HpyAV	CCTTC	6 cut(s)	42, 61, 406, 515, 535, 610
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	2 cut(s)	199, 674
HpyCH4V	TGCA	5 cut(s)	203, 221, 268, 359, 639
HpyF3I	CTNAG	3 cut(s)	126, 246, 497
HpySE526I	ACGT	2 cut(s)	199, 674
Hsp92II	CATG	2 cut(s)	97, 572
Kzo9I	GATC	1 cut(s)	493
LguI	GCTCTTC	1 cut(s)	449
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	2 cut(s)	255, 368
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	2 cut(s)	199, 674
MaeIII	GTNAC	2 cut(s)	340, 670
MalI	GATC	1 cut(s)	495
MbiI	CCGCTC	1 cut(s)	328
MboI	GATC	1 cut(s)	493
MboII	GAAGA	5 cut(s)	369, 400, 419, 466, 625
MluCI	AATT	2 cut(s)	137, 372
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	269, 292, 433, 438, 669
MroXI	GAANNNNTTC	1 cut(s)	376
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	2 cut(s)	97, 572
NmuCI	GTSAC	2 cut(s)	340, 670
NspI	RCATGY	1 cut(s)	572
PciSI	GCTCTTC	1 cut(s)	449
PctI	GAATGC	1 cut(s)	641
PdmI	GAANNNNTTC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	523
PfoI	TCCNGGA	1 cut(s)	396
PkrI	GCNGC	2 cut(s)	327, 599
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
Ppu21I	YACGTR	2 cut(s)	200, 675
Psp6I	CCWGG	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	295
RsaI	GTAC	2 cut(s)	215, 464
RsaNI	GTAC	2 cut(s)	214, 463
RseI	CAYNNNNRTG	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	449
SatI	GCNGC	2 cut(s)	326, 598
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	398
SfaNI	GCATC	2 cut(s)	255, 368
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	137, 372
SsiI	CCGC	1 cut(s)	326
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	2 cut(s)	93, 238
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	2 cut(s)	202, 677
TaqI	TCGA	2 cut(s)	330, 452
TasI	AATT	2 cut(s)	137, 372
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	1 cut(s)	194
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	2 cut(s)	340, 670
TseI	GCWGC	1 cut(s)	597
Tsp45I	GTSAC	2 cut(s)	340, 670
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	523
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	376
XspI	CTAG	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.