Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Forward (+)

11539783 .. 11541140

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1147100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTGGTGAAAGTGTATGGCCCTCTGTACGCCTCCCCAAAGCGTGTGCTGGTATGCCTTGTTGAGAAAGAGGTGGACTTTGAGACAGTCCCCATTGATCTCCTCAAGGGAGAGCACAAACACCCCGACTTCCTCAAATTACAGCCATTTGGATCCGTTCCTCTCATTCAAGATGGGGATTATACTCTATATGAAAAATACAAGTCCCAAGGGACTAATTTGCTGGGTAATACAATTGAGGAAAGAGGGCTTGTGGAACAATGGCTGGAAGTTGAAGCACAAAACTTCCACCCACCAATCAACAACTTGGTGCTTCACATTCTGTTTGCCTCAGTTTTGGGTTTTCCTTCAGACCGCAAGATCATTCAAGAGAGCGAGGAAAAGCTGGGAAAAGTGCTGGACATTTACGAGGAGCGGCTGTCGAAGAGCAAGTACTTGGCCGGTGATTTCTTCAGCCTTGCTGATCTTAGCCACCTTCCATTCACTCACTACTTGGTGGCTAATATGGGAAAGGAGTATATGATAAGGGATAGAAAGCATGTCTCTGCTTGGTGGGATGACATTAGCAACAGACCATCTTGGAAAAGAGTCCTCCAGTTTGGTGCCCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

205

Amino Acids

23.56

Weight (kDa)

5.98

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 65	8.3e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 62	1.2e-07	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	116 - 192	8.8e-14	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	125 - 194	3.3e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	415
AciI	CCGC	2 cut(s)	355, 415
AclWI	GGATC	2 cut(s)	147, 160
AcoI	YGGCCR	1 cut(s)	438
AcuI	CTGAAG	2 cut(s)	333, 436
AfaI	GTAC	2 cut(s)	29, 434
AgsI	TTSAA	3 cut(s)	170, 275, 368
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	77, 547
AlwI	GGATC	2 cut(s)	147, 160
AoxI	GGCC	2 cut(s)	19, 438
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	19, 455
BaeGI	GKGCMC	1 cut(s)	607
BamHI	GGATCC	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	602
BarI	GAAGNNNNNNTAC	2 cut(s)	416, 448
Bbv12I	GWGCWC	1 cut(s)	117
BccI	CCATC	2 cut(s)	167, 583
BcoDI	GTCTC	2 cut(s)	77, 547
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
BmcAI	AGTACT	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	154, 604
BpmI	CTGGAG	1 cut(s)	578
BpuEI	CTTGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	595
BseRI	GAGGAG	2 cut(s)	92, 425
BseSI	GKGCMC	1 cut(s)	607
BseYI	CCCAGC	2 cut(s)	223, 385
BshFI	GGCC	2 cut(s)	21, 440
BshNI	GGYRCC	1 cut(s)	602
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	3 cut(s)	74, 190, 226
BsmAI	GTCTC	2 cut(s)	77, 547
BsmFI	GGGAC	3 cut(s)	74, 190, 226
BsnI	GGCC	2 cut(s)	21, 440
Bsp1286I	GDGCHC	2 cut(s)	117, 607
Bsp143I	GATC	4 cut(s)	97, 152, 360, 463
BspACI	CCGC	2 cut(s)	355, 415
BspANI	GGCC	2 cut(s)	21, 440
BspCNI	CTCAG	1 cut(s)	344
BspLI	GGNNCC	2 cut(s)	154, 604
BspPI	GGATC	2 cut(s)	147, 160
BspQI	GCTCTTC	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	595
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	4 cut(s)	97, 152, 360, 463
BssT1I	CCWWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	419
BstDEI	CTNAG	2 cut(s)	331, 467
BstF5I	GGATG	1 cut(s)	562
BstKTI	GATC	4 cut(s)	100, 155, 363, 466
BstMAI	GTCTC	2 cut(s)	77, 547
BstMBI	GATC	4 cut(s)	97, 152, 360, 463
BstNSI	RCATGY	1 cut(s)	542
BstSLI	GKGCMC	1 cut(s)	607
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	21, 440
BtsCI	GGATG	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	28, 433
CviAII	CATG	1 cut(s)	539
CviQI	GTAC	2 cut(s)	28, 433
DdeI	CTNAG	2 cut(s)	331, 467
DpnI	GATC	4 cut(s)	99, 154, 362, 465
DpnII	GATC	4 cut(s)	97, 152, 360, 463
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco130I	CCWWGG	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	333, 436
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	542
FaiI	YATR	9 cut(s)	18, 55, 183, 190, 192, 506, 519, 521, 540
FaqI	GGGAC	3 cut(s)	74, 190, 226
FatI	CATG	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	1 cut(s)	416
GluI	GCNGC	1 cut(s)	416
GsaI	CCCAGC	2 cut(s)	227, 389
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	2 cut(s)	21, 440
HapII	CCGG	1 cut(s)	441
Hin1II	CATG	1 cut(s)	542
HinfI	GANTC	1 cut(s)	588
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	2 cut(s)	19, 455
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	2 cut(s)	170, 368
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	357, 485
HpyCH4III	ACNGT	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	331, 467
Hsp92II	CATG	1 cut(s)	542
Kzo9I	GATC	4 cut(s)	97, 152, 360, 463
LguI	GCTCTTC	1 cut(s)	419
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	7 cut(s)	35, 209, 251, 371, 383, 454, 608
MalI	GATC	4 cut(s)	99, 154, 362, 465
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	4 cut(s)	97, 152, 360, 463
MboII	GAAGA	2 cut(s)	436, 442
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	117, 607
MluCI	AATT	3 cut(s)	137, 217, 234
MlyI	GAGTC	1 cut(s)	597
MseI	TTAA	1 cut(s)	613
MspI	CCGG	1 cut(s)	441
MunI	CAATTG	1 cut(s)	234
NdeII	GATC	4 cut(s)	97, 152, 360, 463
NlaIII	CATG	1 cut(s)	542
NlaIV	GGNNCC	2 cut(s)	154, 604
NspI	RCATGY	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
PspFI	CCCAGC	2 cut(s)	223, 385
PspN4I	GGNNCC	2 cut(s)	154, 604
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	2 cut(s)	29, 434
RsaNI	GTAC	2 cut(s)	28, 433
SapI	GCTCTTC	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	613
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	4 cut(s)	97, 152, 360, 463
Sau96I	GGNCC	1 cut(s)	20
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	1 cut(s)	597
SduI	GDGCHC	2 cut(s)	117, 607
SetI	ASST	3 cut(s)	75, 387, 477
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	137, 217, 234
SsiI	CCGC	2 cut(s)	355, 415
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	422
TasI	AATT	3 cut(s)	137, 217, 234
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	613
Tru9I	TTAA	1 cut(s)	613
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	145
XceI	RCATGY	1 cut(s)	542
ZrmI	AGTACT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.