Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006529

Physical Location & Seq

Genomic Coordinates Reverse (-)

19485140 .. 19487898

Gene Structure 2759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTGGTAAAGGTGTATGGCCCTTTCTATGCTTCACCTAAGCGTGTGCTAGTGTGCCTTGTTGAGAAGGAGATTGAATTTGAGACCAGCCCCATTGATCTCTTCAAGGGAGAGCACAAAGACCCTGAATTCCTCAAATTGCAGCCCTTTGGACAAGTTCCTGTCATTCAAGATGGGGATTACACTTTATATGAATCGCGCGCAATCATAAGGTACTATGCAGAAAAATACAAGTCCCAAGGGACTGATTTGCTGGGAAAGACAATTGAGGAAAGAGGTCTTGTGGAACAATGGCTAGAGGTTGAAGCAAGCAACTATCACCCACCACTCGACAACTTAGTTATTCAGATTTTGTTTGCCCCAGAATTGGGTCTTCCTTCGGACCCGAAGATCATTCAGGAGAGTGAAGAAAAGCTTGGCAAGGTGTTGGACGTTTACGAGGAGAGGCTGTCGAAGAGCAAGTATTTGGCTGGTGATTTTTTCAGCCTTGCTGATCTTAGCCACCTTCCATTCACCTACTACTTGGCAAATAGTATGGAGAAGGAGTATATGATAAAGGACAGAAAGCATGTCTCTGCTTGGTGGGATGATATTAGCAACAGACCTTCTTGGAAGAAGGTCCTCCAGCAGTTTGGTGCCCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0004601 GO:0004602 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016740 GO:0016765 GO:0019748 GO:0030054 GO:0030312 GO:0033218 GO:0034641 GO:0042221 GO:0042277 GO:0042742 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071704 GO:0071944 GO:0072341 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1900750 GO:1901564 GO:1901681 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

216

Amino Acids

24.96

Weight (kDa)

5.14

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30860 AT2G30860
fragaria_vesca	FvH4_6g38760
malus_domestica	MD09G1147100.v1.1 MD09G1147300.v1.1 MD09G1147400.v1.1 MD17G1133600.v1.1 MD17G1133800.v1.1 MD17G1134300.v1.1
prunus_persica	Prupe.3G178100_v2.0.a1 Prupe.3G178200_v2.0.a1 Prupe.3G178300_v2.0.a1
pyrus_communis	pycom09g06760 pycom17g12830 pycom17g12850
rosa_chinensis	RchiOBHm_Chr2g0152311
rosa_laevigata	RLG00000020627
rosa_multiflora	Rmu_sc0004002.1_g000002
rosa_rugosa	Rorug02G0432000 Rorug02G0432100 Rorug02G0432200
rosa_samantha	Rh2AG493800 Rh2BG506100 Rh2CG480100 Rh2DG517200
rosa_wichuraiana	Rw2G040610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AccII	CGCG	2 cut(s)	199, 201
AcsI	RAATTY	2 cut(s)	77, 128
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	367, 368
AgsI	TTSAA	4 cut(s)	77, 106, 170, 305
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	2 cut(s)	77, 577
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	2 cut(s)	77, 128
AspLEI	GCGC	2 cut(s)	201, 203
AspS9I	GGNCC	3 cut(s)	20, 382, 619
AsuHPI	GGTGA	4 cut(s)	27, 311, 485, 505
AvaII	GGWCC	2 cut(s)	382, 619
BaeGI	GKGCMC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	77, 577
BfaI	CTAG	2 cut(s)	50, 296
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	382, 619
BmgT120I	GGNCC	3 cut(s)	20, 382, 619
BmiI	GGNNCC	2 cut(s)	384, 637
BpiI	GAAGAC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	238
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 530, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 368
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	2 cut(s)	367, 368
BsePI	GCGCGC	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	199, 201
BshFI	GGCC	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	635
BsiHKAI	GWGCWC	1 cut(s)	117
BslFI	GGGAC	2 cut(s)	220, 256
BslI	CCNNNNNNNGG	2 cut(s)	367, 368
BsmAI	GTCTC	2 cut(s)	77, 577
BsmFI	GGGAC	2 cut(s)	220, 256
BsnI	GGCC	1 cut(s)	21
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	117, 640
Bsp143I	GATC	3 cut(s)	97, 390, 493
BspANI	GGCC	1 cut(s)	21
BspFNI	CGCG	2 cut(s)	199, 201
BspLI	GGNNCC	2 cut(s)	384, 637
BspQI	GCTCTTC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	238
BssHII	GCGCGC	1 cut(s)	199
BssMI	GATC	3 cut(s)	97, 390, 493
BssT1I	CCWWGG	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	107, 449
BstC8I	GCNNGC	2 cut(s)	201, 310
BstDEI	CTNAG	3 cut(s)	39, 337, 497
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	2 cut(s)	199, 201
BstHHI	GCGC	2 cut(s)	201, 203
BstKTI	GATC	3 cut(s)	100, 393, 496
BstMAI	GTCTC	2 cut(s)	77, 577
BstMBI	GATC	3 cut(s)	97, 390, 493
BstNSI	RCATGY	1 cut(s)	572
BstSLI	GKGCMC	1 cut(s)	640
BstUI	CGCG	2 cut(s)	199, 201
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	632
BsuRI	GGCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	201, 310
CfoI	GCGC	2 cut(s)	201, 203
Cfr13I	GGNCC	3 cut(s)	20, 382, 619
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	569
CviJI	RGCY	9 cut(s)	21, 90, 145, 295, 415, 448, 470, 486, 501
CviKI_1	RGCY	9 cut(s)	21, 90, 145, 295, 415, 448, 470, 486, 501
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	39, 337, 497
DpnI	GATC	3 cut(s)	99, 392, 495
DpnII	GATC	3 cut(s)	97, 390, 493
Eam1104I	CTCTTC	2 cut(s)	107, 449
EarI	CTCTTC	2 cut(s)	107, 449
Eco130I	CCWWGG	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	382, 619
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	572
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FaqI	GGGAC	2 cut(s)	220, 256
FatI	CATG	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	599
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	2 cut(s)	50, 296
GlaI	GCGC	2 cut(s)	200, 202
GluI	GCNGC	1 cut(s)	143
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	608
HaeIII	GGCC	1 cut(s)	21
HhaI	GCGC	2 cut(s)	201, 203
Hin1II	CATG	1 cut(s)	572
Hin6I	GCGC	2 cut(s)	199, 201
HinP1I	GCGC	2 cut(s)	199, 201
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	4 cut(s)	27, 311, 485, 505
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	2 cut(s)	348, 382
Hpy188III	TCNNGA	2 cut(s)	170, 398
Hpy8I	GTNNAC	1 cut(s)	436
HpyAV	CCTTC	6 cut(s)	61, 387, 515, 535, 610, 615
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	2 cut(s)	142, 221
HpyF3I	CTNAG	3 cut(s)	39, 337, 497
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	1 cut(s)	572
HspAI	GCGC	2 cut(s)	199, 201
Kzo9I	GATC	3 cut(s)	97, 390, 493
LguI	GCTCTTC	1 cut(s)	449
LpnPI	CCDG	8 cut(s)	100, 138, 174, 239, 375, 383, 456, 638
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	50, 296
MaeII	ACGT	1 cut(s)	432
MalI	GATC	3 cut(s)	99, 392, 495
MboI	GATC	3 cut(s)	97, 390, 493
MboII	GAAGA	6 cut(s)	94, 365, 400, 419, 466, 625
MfeI	CAATTG	1 cut(s)	264
MhlI	GDGCHC	2 cut(s)	117, 640
MluCI	AATT	5 cut(s)	77, 128, 137, 264, 365
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	7 cut(s)	143, 262, 269, 292, 433, 438, 632
MseI	TTAA	1 cut(s)	646
MunI	CAATTG	1 cut(s)	264
MvnI	CGCG	2 cut(s)	199, 201
NdeII	GATC	3 cut(s)	97, 390, 493
NlaIII	CATG	1 cut(s)	572
NlaIV	GGNNCC	2 cut(s)	384, 637
NspI	RCATGY	1 cut(s)	572
PauI	GCGCGC	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	144
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
PspFI	CCCAGC	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	384, 637
PspPI	GGNCC	3 cut(s)	20, 382, 619
PspPPI	RGGWCCY	1 cut(s)	619
PteI	GCGCGC	1 cut(s)	199
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	646
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	97, 390, 493
Sau96I	GGNCC	3 cut(s)	20, 382, 619
SduI	GDGCHC	2 cut(s)	117, 640
SinI	GGWCC	2 cut(s)	382, 619
Sse9I	AATT	5 cut(s)	77, 128, 137, 264, 365
SspMI	CTAG	2 cut(s)	50, 296
StyI	CCWWGG	1 cut(s)	238
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	330, 452
TasI	AATT	5 cut(s)	77, 128, 137, 264, 365
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	646
Tru9I	TTAA	1 cut(s)	646
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	382, 619
XapI	RAATTY	2 cut(s)	77, 128
XceI	RCATGY	1 cut(s)	572
XspI	CTAG	2 cut(s)	50, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.