FvH4_6g39560

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004181
Physical Location & Seq
Forward (+)
31239622 .. 31244195
4574 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39560.t1

Sequence Viewer

Length: 1125 bp
ATGGCAAAAGTCTTCTTCACCAATAGTGGTTCCGAAGCCAATGATACTCAGGTGAAGCTGGTCTGGTATTATAATAATGCACTTGCACGTCCAGAAAAAAAGAAGTTCATAGCTCGACAAAAATCGTATATTCACTACTCATTTAATTTGTTCCACCCTTATTTTCTCTGGTCATTGTACTCTAGTCCTTTGACGATATCTTTGTATTATGACAGGTACCATGGTTCAACTTTGATATCAGCAAGCCTTTCTGGCCTCCCAGCCCTGCATCAAAAATTTGATCTTCCTGCTCCATTTGTATACCACACTGATTGCCCCCATTATTGGCGCTATCACCAACCAGGTGAGACGGAGGAGGAATTCTCAACCAGATTAGCCAACAATTTAGAGAATCTTATCCTAAAAGAAGGACCAGACACTATTGCGGCGTTCATTGCCGAACCTGTCATGGGTGCAGGAGGAGTGATACCTCCCCCTGCAACTTATTTTGACAAGATTCAAGCTGTTGTGAAGAAATATGACATTCTATTTATTGCGGATGAGGTGATCTGTGCATTCGGAAGACTTGGGTACATGTATGGGTGTGATAAATACAACATAAAACCAGACCTTGTATCTGTAGCCAAGGCACTTTCTTCTGCATATATGCCAATTGGTGCTGTTCTTGTGAGCCCAAAAATTGCAGATGTCATACATTCTCAAAGCAGCAAGCTTGGTTCATTTTCTCATGGATTCACATACTCTGGACACCCTGTAGCCTGTGCAGTTGCAATTGAGGCGCTCAAGATATACAAGGAAAGAAAAATCGTTGAACAAGTAAAGAGCATTGCCCCACAGTTTCAAGATGGTATAAGAGCCTTCTCTGATAGTCCCATTATAGGAGAGATACGGGGAACTGGATTGATCCTTGCTACAGAATTTACAGACAATAAGTCACCTAATGATCTATTCCCTCCTGAATGGGGGGTGGGAGCATATTTTGGAGCCGAATGTGAGAAGCAAGGGATGCTGGTACGTGTTGCTGGTGATACCATAATGATGTTGTTGTCTACAACCACAAGAGCAAAACACTTGAGCATAAACACATATATAGATACAACTTATACAAGATCATATACACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

375

Amino Acids

41.75

Weight (kDa)

7.16

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 3 - 354 3.7e-62 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
Acc65I GGTACC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 216
AccI GTMKAC 2 cut(s) 300, 1049
AciI CCGC 2 cut(s) 425, 536
AclWI GGATC 1 cut(s) 898
AcsI RAATTY 3 cut(s) 275, 359, 917
AfaI GTAC 4 cut(s) 179, 218, 572, 1014
AfiI CCNNNNNNNGG 4 cut(s) 324, 449, 878, 962
AflIII ACRYGT 2 cut(s) 573, 1015
AgsI TTSAA 4 cut(s) 228, 500, 812, 842
AhdI GACNNNNNGTC 1 cut(s) 931
AjiI CACGTC 1 cut(s) 89
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 4 cut(s) 58, 113, 503, 712
AluI AGCT 4 cut(s) 58, 113, 503, 712
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 1 cut(s) 898
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 705
ApoI RAATTY 3 cut(s) 275, 359, 917
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
Asp718I GGTACC 1 cut(s) 216
AspLEI GCGC 2 cut(s) 330, 781
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 7 cut(s) 10, 64, 326, 356, 556, 927, 1037
AvaII GGWCC 1 cut(s) 410
BaeI ACNNNNGTAYC 4 cut(s) 36, 69, 208, 241
BanI GGYRCC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 674
BbsI GAAGAC 2 cut(s) 4, 568
BbvI GCAGC 1 cut(s) 717
BccI CCATC 1 cut(s) 839
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 3 cut(s) 618, 753, 912
BfoI RGCGCY 2 cut(s) 331, 782
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 2 cut(s) 426, 706
BlsI GCNGC 2 cut(s) 427, 707
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 410
BmeRI GACNNNNNGTC 1 cut(s) 931
BmgBI CACGTC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 3 cut(s) 31, 218, 985
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 2 cut(s) 277, 996
BpiI GAAGAC 2 cut(s) 4, 568
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpuEI CTTGAG 2 cut(s) 767, 1093
BsaAI YACGTR 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 220, 624
Bsc4I CCNNNNNNNGG 4 cut(s) 324, 449, 878, 962
Bse1I ACTGG 1 cut(s) 901
Bse3DI GCAATG 2 cut(s) 432, 825
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 220, 624
BseGI GGATG 2 cut(s) 544, 1011
BseLI CCNNNNNNNGG 4 cut(s) 324, 449, 878, 962
BseMI GCAATG 2 cut(s) 432, 825
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 901
BseRI GAGGAG 2 cut(s) 368, 474
BseXI GCAGC 1 cut(s) 717
BseYI CCCAGC 1 cut(s) 259
BsgI GTGCAG 2 cut(s) 474, 783
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 216
BslFI GGGAC 1 cut(s) 855
BslI CCNNNNNNNGG 4 cut(s) 324, 449, 878, 962
BsmAI GTCTC 1 cut(s) 341
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 855
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 674
Bsp143I GATC 5 cut(s) 280, 546, 903, 943, 1109
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 2 cut(s) 425, 536
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 31, 218, 985
BspPI GGATC 1 cut(s) 898
BspT107I GGYRCC 1 cut(s) 216
BsrDI GCAATG 2 cut(s) 432, 825
BsrI ACTGG 1 cut(s) 901
BssECI CCNNGG 2 cut(s) 220, 624
BssMI GATC 5 cut(s) 280, 546, 903, 943, 1109
BssNAI GTATAC 1 cut(s) 301
BssT1I CCWWGG 2 cut(s) 220, 624
Bst1107I GTATAC 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 837, 1122
BstAPI GCANNNNNTGC 1 cut(s) 1006
BstBAI YACGTR 1 cut(s) 1016
BstC8I GCNNGC 2 cut(s) 244, 710
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 2 cut(s) 544, 1011
BstH2I RGCGCY 2 cut(s) 331, 782
BstHHI GCGC 2 cut(s) 330, 781
BstKTI GATC 5 cut(s) 283, 549, 906, 946, 1112
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 5 cut(s) 280, 546, 903, 943, 1109
BstMWI GCNNNNNNNGC 4 cut(s) 252, 434, 776, 1006
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 3 cut(s) 618, 753, 912
BstV1I GCAGC 1 cut(s) 717
BstV2I GAAGAC 2 cut(s) 4, 568
BstZ17I GTATAC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 220
BtrI CACGTC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 544, 1011
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 244, 710
CfoI GCGC 2 cut(s) 330, 781
Cfr13I GGNCC 1 cut(s) 410
CsiI ACCWGGT 1 cut(s) 340
Csp6I GTAC 4 cut(s) 178, 217, 571, 1013
CspCI CAANNNNNGTGG 2 cut(s) 293, 328
CviAII CATG 4 cut(s) 221, 448, 574, 728
CviQI GTAC 4 cut(s) 178, 217, 571, 1013
DdeI CTNAG 1 cut(s) 48
DpnI GATC 5 cut(s) 282, 548, 905, 945, 1111
DpnII GATC 5 cut(s) 280, 546, 903, 943, 1109
DriI GACNNNNNGTC 1 cut(s) 931
Eam1105I GACNNNNNGTC 1 cut(s) 931
Eco130I CCWWGG 2 cut(s) 220, 624
Eco24I GRGCYC 1 cut(s) 674
Eco32I GATATC 2 cut(s) 198, 237
Eco47I GGWCC 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 340
EcoRV GATATC 2 cut(s) 198, 237
EcoT14I CCWWGG 2 cut(s) 220, 624
EcoT38I GRGCYC 1 cut(s) 674
ErhI CCWWGG 2 cut(s) 220, 624
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 4 cut(s) 224, 451, 577, 731
FaqI GGGAC 1 cut(s) 855
FatI CATG 4 cut(s) 220, 447, 573, 727
FblI GTMKAC 2 cut(s) 300, 1049
Fnu4HI GCNGC 2 cut(s) 426, 706
FokI GGATG 2 cut(s) 551, 1018
FriOI GRGCYC 1 cut(s) 674
Fsp4HI GCNGC 2 cut(s) 426, 706
FspBI CTAG 1 cut(s) 183
GlaI GCGC 2 cut(s) 329, 780
GluI GCNGC 2 cut(s) 426, 706
GsaI CCCAGC 1 cut(s) 263
HaeII RGCGCY 2 cut(s) 331, 782
HaeIII GGCC 1 cut(s) 255
HhaI GCGC 2 cut(s) 330, 781
Hin1II CATG 4 cut(s) 224, 451, 577, 731
Hin6I GCGC 2 cut(s) 328, 779
HinP1I GCGC 2 cut(s) 328, 779
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 3 cut(s) 391, 496, 732
HphI GGTGA 7 cut(s) 10, 64, 326, 356, 556, 927, 1037
Hpy166II GTNNAC 2 cut(s) 301, 1050
Hpy188I TCNGA 3 cut(s) 34, 560, 865
Hpy188III TCNNGA 5 cut(s) 92, 744, 784, 842, 956
Hpy8I GTNNAC 2 cut(s) 301, 1050
HpyAV CCTTC 2 cut(s) 401, 868
HpyCH4III ACNGT 2 cut(s) 837, 1122
HpyCH4IV ACGT 2 cut(s) 88, 1015
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 434, 776, 1006
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 2 cut(s) 88, 1015
Hsp92II CATG 4 cut(s) 224, 451, 577, 731
HspAI GCGC 2 cut(s) 328, 779
KpnI GGTACC 1 cut(s) 220
Kzo9I GATC 5 cut(s) 280, 546, 903, 943, 1109
LmnI GCTCC 3 cut(s) 295, 971, 983
Lsp1109I GCAGC 1 cut(s) 717
LweI GCATC 2 cut(s) 277, 996
MabI ACCWGGT 1 cut(s) 340
MaeI CTAG 1 cut(s) 183
MaeII ACGT 2 cut(s) 88, 1015
MaeIII GTNAC 1 cut(s) 933
MalI GATC 5 cut(s) 282, 548, 905, 945, 1111
MboI GATC 5 cut(s) 280, 546, 903, 943, 1109
MboII GAAGA 6 cut(s) 4, 7, 275, 523, 573, 627
MfeI CAATTG 2 cut(s) 651, 771
MhlI GDGCHC 1 cut(s) 674
MluCI AATT 8 cut(s) 145, 275, 359, 382, 651, 678, 771, 917
MnlI CCTC 8 cut(s) 266, 346, 349, 452, 480, 535, 769, 963
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 1 cut(s) 1037
MspR9I CCNGG 1 cut(s) 342
MunI CAATTG 2 cut(s) 651, 771
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 4 cut(s) 252, 434, 776, 1006
NcoI CCATGG 1 cut(s) 220
NdeII GATC 5 cut(s) 280, 546, 903, 943, 1109
NlaIII CATG 4 cut(s) 224, 451, 577, 731
NlaIV GGNNCC 3 cut(s) 31, 218, 985
NmuCI GTSAC 1 cut(s) 933
NspI RCATGY 1 cut(s) 577
PciI ACATGT 1 cut(s) 573
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 3 cut(s) 391, 496, 732
PkrI GCNGC 2 cut(s) 427, 707
Ppu21I YACGTR 1 cut(s) 1016
PscI ACATGT 1 cut(s) 573
PsiI TTATAA 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 31, 218, 985
PspPI GGNCC 1 cut(s) 410
RsaI GTAC 4 cut(s) 179, 218, 572, 1014
RsaNI GTAC 4 cut(s) 178, 217, 571, 1013
RseI CAYNNNNRTG 1 cut(s) 1037
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 2 cut(s) 426, 706
Sau3AI GATC 5 cut(s) 280, 546, 903, 943, 1109
Sau96I GGNCC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 674
SexAI ACCWGGT 1 cut(s) 340
SfaNI GCATC 2 cut(s) 277, 996
SfcI CTRYAG 3 cut(s) 618, 753, 912
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 1 cut(s) 1037
SmlI CTYRAG 2 cut(s) 782, 1072
SmoI CTYRAG 2 cut(s) 782, 1072
Sse9I AATT 8 cut(s) 145, 275, 359, 382, 651, 678, 771, 917
SsiI CCGC 2 cut(s) 425, 536
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 2 cut(s) 220, 624
TaaI ACNGT 2 cut(s) 837, 1122
TaiI ACGT 2 cut(s) 91, 1018
TaqI TCGA 1 cut(s) 115
TasI AATT 8 cut(s) 145, 275, 359, 382, 651, 678, 771, 917
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 3 cut(s) 391, 496, 732
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 933
TseI GCWGC 1 cut(s) 705
Tsp45I GTSAC 1 cut(s) 933
TspDTI ATGAA 3 cut(s) 97, 421, 708
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 3 cut(s) 275, 359, 917
XceI RCATGY 1 cut(s) 577
XmiI GTMKAC 2 cut(s) 300, 1049
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.