Rw7G022490

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004181
Physical Location & Seq
Forward (+)
26520312 .. 26522593
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G022490.1

Sequence Viewer

Length: 522 bp
GTGAAGCTAATTTGGTATTATAATAATGCACTTGGACTCTTTCAAAAAAAAAATAATAATAATGCACTTGGACGACCAGATAAAAAGAAATTCGTAGCTCGACATAAATCGTATATTCACTACTCAATTAATTTGTTTTCTCCTTATTTTCTCTGGTCATTGTACTCAAGTCCTTTGATGTTATCTTTGTATTATGACAGGTACCATGGTTCAACTTTGATAGCAGCAAGCCTTTCTGGCCTCCCAGCTCTGCATCAAAAATTTGATCTTCCTGCTCCATTTGTATTGCACACTGATTGCCCCCATTATTGGCGCTATCACCAGCCAGGTGAGTCGGAGGAGGAATTCTCAACCAGATTAGCCAATAATTTTATAGAATCTTATCCTCAAAGAAGGACCAGAGACTTTTATTACCTTCAGATTGCTGCGTTCATTGCCGAACCTGTCATAGGTGCAGGAGGTGTGATACCTCCCCCTGCAACTTATTTTGACAAGGACAACTTAAAAAGATTGGAGAAAGAT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615
KEGG Pathways
Metabolic & Signaling
ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

174

Amino Acids

20.32

Weight (kDa)

9.18

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 67 - 165 3.2e-06 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
Acc65I GGTACC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 201
AcsI RAATTY 3 cut(s) 89, 260, 344
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 2 cut(s) 164, 203
AfiI CCNNNNNNNGG 2 cut(s) 309, 449
AgsI TTSAA 2 cut(s) 44, 213
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 3 cut(s) 7, 98, 248
AluI AGCT 3 cut(s) 7, 98, 248
Alw26I GTCTC 1 cut(s) 396
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 224, 425
ApoI RAATTY 3 cut(s) 89, 260, 344
AseI ATTAAT 1 cut(s) 129
Asp718I GGTACC 1 cut(s) 201
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 2 cut(s) 311, 341
AvaII GGWCC 1 cut(s) 396
BaeI ACNNNNGTAYC 2 cut(s) 193, 226
BanI GGYRCC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 236, 412
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 237
BisI GCNGC 2 cut(s) 225, 426
BlsI GCNGC 2 cut(s) 226, 427
Bme1390I CCNGG 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 262
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpuEI CTTGAG 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 449
Bse3DI GCAATG 1 cut(s) 432
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 309, 449
BseMI GCAATG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 2 cut(s) 236, 412
BseYI CCCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 309, 449
BsmAI GTCTC 1 cut(s) 396
BsnI GGCC 1 cut(s) 240
Bsp143I GATC 1 cut(s) 265
Bsp19I CCATGG 1 cut(s) 205
BspANI GGCC 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 447
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 2 cut(s) 237, 434
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 236, 412
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 2 cut(s) 163, 202
CviAII CATG 1 cut(s) 206
CviJI RGCY 7 cut(s) 7, 98, 231, 240, 248, 325, 362
CviKI_1 RGCY 7 cut(s) 7, 98, 231, 240, 248, 325, 362
CviQI GTAC 2 cut(s) 163, 202
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 401
EcoNI CCTNNNNNAGG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 209
FaiI YATR 7 cut(s) 21, 105, 114, 195, 207, 374, 449
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 225, 426
Fsp4HI GCNGC 2 cut(s) 225, 426
GlaI GCGC 1 cut(s) 314
GluI GCNGC 2 cut(s) 225, 426
GsaI CCCAGC 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 1 cut(s) 240
HhaI GCGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 3 cut(s) 36, 332, 377
HphI GGTGA 2 cut(s) 311, 341
Hpy188I TCNGA 2 cut(s) 337, 420
HpyAV CCTTC 2 cut(s) 387, 425
HpyCH4V TGCA 6 cut(s) 29, 65, 253, 289, 455, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 434
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 313
KpnI GGTACC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 2 cut(s) 236, 412
LweI GCATC 1 cut(s) 262
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 1 cut(s) 260
MluCI AATT 7 cut(s) 9, 89, 126, 130, 260, 344, 367
MlyI GAGTC 2 cut(s) 30, 341
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 6 cut(s) 251, 331, 334, 396, 452, 480
MseI TTAA 2 cut(s) 129, 503
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 2 cut(s) 237, 434
NcoI CCATGG 1 cut(s) 205
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 2 cut(s) 226, 427
PleI GAGTC 2 cut(s) 30, 340
PpsI GAGTC 2 cut(s) 30, 340
PshBI ATTAAT 1 cut(s) 129
PsiI TTATAA 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 203
PspPI GGNCC 1 cut(s) 396
RsaI GTAC 2 cut(s) 164, 203
RsaNI GTAC 2 cut(s) 163, 202
SaqAI TTAA 2 cut(s) 129, 503
SatI GCNGC 2 cut(s) 225, 426
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 2 cut(s) 30, 341
ScrFI CCNGG 1 cut(s) 327
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 7 cut(s) 9, 89, 126, 130, 260, 344, 367
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 205
TaqI TCGA 1 cut(s) 100
TasI AATT 7 cut(s) 9, 89, 126, 130, 260, 344, 367
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 2 cut(s) 129, 503
Tru9I TTAA 2 cut(s) 129, 503
TscAI CASTG 1 cut(s) 298
TseI GCWGC 2 cut(s) 224, 425
TspDTI ATGAA 1 cut(s) 421
TspRI CASTG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 396
VspI ATTAAT 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 447
XapI RAATTY 3 cut(s) 89, 260, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.