Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002187.1

Orthogroup ID

OG0004181

Physical Location & Seq

Genomic Coordinates Forward (+)

65369 .. 68355

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002187.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgcacgtggttgttgagatcggcctttgttatgcccgaccttacaatttttcccacggagctcaaattcccctgtaccatggttcaactttgatagcagcaagcctttctggcctcccagctctgcatcaaaaatttgatcttcctgctccatttgtattgcacactgattgtccccattattggcgctatcaccagccaggtgagtcggaggaggaattctcaaccagattagccaatgatttggagaatctgatcctcaaagaaggaccagagactattgctgcgttcattgccgaacctgtcataggtgcaggaggtgtgatacctccccctgcaacttattttgacaaggacaacttaaaaagattggagaaagaggaaagatgccgaggacttgtgcagggaaaggagaagactgctggagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

143

Amino Acids

15.84

Weight (kDa)

5.6

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22200 AT3G22200
fragaria_vesca	FvH4_6g39530 FvH4_6g39560
malus_domestica	MD09G1139200.v1.1 MD17G1128700.v1.1
prunus_persica	Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1
pyrus_communis	pycom09g05980 pycom17g12080
rosa_chinensis	RchiOBHm_Chr1g0318031 RchiOBHm_Chr2g0136861 RchiOBHm_Chr2g0153591 RchiOBHm_Chr4g0413181 RchiOBHm_Chr7g0235481
rosa_laevigata	RLG00000020713
rosa_multiflora	Rmu_sc0002187.1_g000020 Rmu_sc0018730.1_g000001 Rmu_ssc0000024.1_g000016
rosa_roxburghii	Rroxscaffold_2G00094890 Rroxscaffold_4G00282830
rosa_rugosa	Rorug02G0440800
rosa_samantha	Rh2AG384900 Rh2AG528200 Rh2BG391800 Rh2BG514300 Rh2CG512500 Rh2DG526100 Rh4CG188400 Rh6AG130800
rosa_wichuraiana	Rw2G041360 Rw7G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	3 cut(s)	66, 134, 218
AcvI	CACGTG	1 cut(s)	7
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	183, 308
AgsI	TTSAA	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	2 cut(s)	62, 122
AluI	AGCT	2 cut(s)	62, 122
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	22, 112
ApeKI	GCWGC	2 cut(s)	98, 284
ApoI	RAATTY	3 cut(s)	66, 134, 218
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	185, 215
AvaII	GGWCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	110, 271
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	190
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	2 cut(s)	99, 285
BlsI	GCNGC	2 cut(s)	100, 286
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	136, 377
BpiI	GAAGAC	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BsaAI	YACGTR	1 cut(s)	7
BsaJI	CCNNGG	3 cut(s)	55, 79, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 308
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	3 cut(s)	55, 79, 391
BseLI	CCNNNNNNNGG	2 cut(s)	183, 308
BseMI	GCAATG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	110, 271
BseYI	CCCAGC	1 cut(s)	118
BsgI	GTGCAG	2 cut(s)	333, 422
BshFI	GGCC	2 cut(s)	24, 114
BsiHKAI	GWGCWC	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	183, 308
BsmAI	GTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	24, 114
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	18, 139, 255
Bsp19I	CCATGG	1 cut(s)	79
BspANI	GGCC	2 cut(s)	24, 114
BspPI	GGATC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	55, 79, 391
BssMI	GATC	3 cut(s)	18, 139, 255
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	103
BstDSI	CCRYGG	2 cut(s)	55, 79
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	3 cut(s)	21, 142, 258
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	3 cut(s)	18, 139, 255
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 293
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	110, 271
BstV2I	GAAGAC	1 cut(s)	422
BstXI	CCANNNNNNTGG	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	24, 114
BtgI	CCRYGG	2 cut(s)	55, 79
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	7 cut(s)	24, 62, 105, 114, 122, 199, 236
CviKI_1	RGCY	7 cut(s)	24, 62, 105, 114, 122, 199, 236
CviQI	GTAC	1 cut(s)	76
DpnI	GATC	3 cut(s)	20, 141, 257
DpnII	GATC	3 cut(s)	18, 139, 255
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	62
Eco72I	CACGTG	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	62
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	33, 81, 308
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	99, 285
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	99, 285
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	2 cut(s)	99, 285
GsaI	CCCAGC	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	24, 114
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	206, 250
HphI	GGTGA	2 cut(s)	185, 215
Hpy188I	TCNGA	2 cut(s)	211, 255
HpyAV	CCTTC	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	6 cut(s)	4, 127, 163, 314, 338, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 293
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	18, 139, 255
LmnI	GCTCC	2 cut(s)	59, 154
Lsp1109I	GCAGC	2 cut(s)	110, 271
LweI	GCATC	2 cut(s)	136, 377
MaeII	ACGT	1 cut(s)	6
MalI	GATC	3 cut(s)	20, 141, 257
MboI	GATC	3 cut(s)	18, 139, 255
MboII	GAAGA	2 cut(s)	134, 427
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	4 cut(s)	46, 66, 134, 218
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	8 cut(s)	125, 205, 208, 269, 311, 339, 373, 386
MseI	TTAA	2 cut(s)	362, 430
MspR9I	CCNGG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	111, 293
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	18, 139, 255
NlaIII	CATG	1 cut(s)	83
NmeAIII	GCCGAG	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	100, 286
PleI	GAGTC	1 cut(s)	214
PmaCI	CACGTG	1 cut(s)	7
PmlI	CACGTG	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	199
PspCI	CACGTG	1 cut(s)	7
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	362, 430
SatI	GCNGC	2 cut(s)	99, 285
Sau3AI	GATC	3 cut(s)	18, 139, 255
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	9 cut(s)	9, 43, 64, 124, 205, 304, 313, 322, 331
SfaNI	GCATC	2 cut(s)	136, 377
SinI	GGWCC	1 cut(s)	269
Sse9I	AATT	4 cut(s)	46, 66, 134, 218
SstI	GAGCTC	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	79
TaiI	ACGT	1 cut(s)	9
TasI	AATT	4 cut(s)	46, 66, 134, 218
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	362, 430
Tru9I	TTAA	2 cut(s)	362, 430
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	2 cut(s)	98, 284
TspDTI	ATGAA	1 cut(s)	280
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	269
XagI	CCTNNNNNAGG	1 cut(s)	306
XapI	RAATTY	3 cut(s)	66, 134, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.