Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004181

Physical Location & Seq

Genomic Coordinates Reverse (-)

56514021 .. 56515840

Gene Structure 1820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0440800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTTACCAAAAGATTTGGATTGTCATCTCCCTCTACCTCTCAGCCATATCAACCATTTTTCACCACCTCAAATCCTTTTTCTTCAAAACAAACTGGGATTCCATCTTTTTCAGAATCCCAGATACCCTCGTATCCCTATACTTCAGACTATGCGGTCTATCTCCTTGCACCGTTGACATTGACGACCAAACCACAGTCCACTTCTGGACCGCCAACCACCGCCGGTTCGATAAACCAAGCCTGGTTCTGGTTCACGGCTACGGCGGCAACTCCCTGTGGCAGTTCGTCTGTCAAGTGGGTCCCTTGTCCAAGAAGTTCAACGTGTACGTGCCGGATTTGCTGTTCTTCGGGAAGTCTTACACGAACCGGTCAGACCGGAGCGAGTCTTTTCAAGCCAAGTGCGTTATGGAGGGGCTGAAGAGGCTGGGCGTGGACCGGTACTCGGTGTACGGTATTAGCTACGGCGGCTTCGTGGCGTACCGCATGGCAGAGATGTGTCCAGAGACGGTGGAGAAGGTTGTGATCGTGAGTAGTGGGGTGGTGTGGAATGATCAGCAGAAGGAGGAGTTGTTGAGGAAGAATTCAAACGCTTTGGAGATTCTTGTAGCGAATAATCCACATGATCTACGGTTGTTAGTGAGTCGATCGATTTACAAGTATGATGTTTTCAAGTGGGTTCCTGATTATGTCCTTCAAAAGCTCATTGAGGCGAACAAGGAAAATAGAAAGGAAAAATTAGAGCTATTGGAACACTTGGTGGCAAAGAAAGCAGATCCAAGCCTTGCTATCCTAAGTCAGGAAACGCTAATAATTTGGGGTGATCAAGATAATGTCTTCCCACTTTACATGGCCTACCAGTTGCAAAGGCACTTGGGCCCCAAATCAAAACTAGAGATTATCAAGGACACAGGGCATGCAGCAAATTTTGATTCACCGGACACAATCAATGGATTGATAAAGTCATTTGTTTTGGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

327

Amino Acids

37.61

Weight (kDa)

8.62

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	80 - 313	6.3e-24	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	82 - 316	3.5e-13	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22200 AT3G22200
fragaria_vesca	FvH4_6g39530 FvH4_6g39560
malus_domestica	MD09G1139200.v1.1 MD17G1128700.v1.1
prunus_persica	Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1
pyrus_communis	pycom09g05980 pycom17g12080
rosa_chinensis	RchiOBHm_Chr1g0318031 RchiOBHm_Chr2g0136861 RchiOBHm_Chr2g0153591 RchiOBHm_Chr4g0413181 RchiOBHm_Chr7g0235481
rosa_laevigata	RLG00000020713
rosa_multiflora	Rmu_sc0002187.1_g000020 Rmu_sc0018730.1_g000001 Rmu_ssc0000024.1_g000016
rosa_roxburghii	Rroxscaffold_2G00094890 Rroxscaffold_4G00282830
rosa_rugosa	Rorug02G0440800
rosa_samantha	Rh2AG384900 Rh2AG528200 Rh2BG391800 Rh2BG514300 Rh2CG512500 Rh2DG526100 Rh4CG188400 Rh6AG130800
rosa_wichuraiana	Rw2G041360 Rw7G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	156
AciI	CCGC	6 cut(s)	156, 213, 223, 267, 468, 484
AclWI	GGATC	1 cut(s)	770
AcsI	RAATTY	2 cut(s)	583, 925
AcuI	CTGAAG	2 cut(s)	130, 440
AdeI	CACNNNGTG	1 cut(s)	760
AfaI	GTAC	4 cut(s)	329, 443, 452, 482
AfiI	CCNNNNNNNGG	3 cut(s)	250, 445, 799
AflIII	ACRYGT	1 cut(s)	324
AgeI	ACCGGT	2 cut(s)	369, 438
AgsI	TTSAA	6 cut(s)	88, 322, 395, 588, 673, 698
AjnI	CCWGG	1 cut(s)	243
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	462, 703, 745
AluI	AGCT	3 cut(s)	462, 703, 745
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	770
AoxI	GGCC	2 cut(s)	852, 877
ApaI	GGGCCC	1 cut(s)	881
ApeKI	GCWGC	1 cut(s)	920
ApoI	RAATTY	2 cut(s)	583, 925
AsiGI	ACCGGT	2 cut(s)	369, 438
AspS9I	GGNCC	5 cut(s)	210, 302, 436, 877, 878
AsuHPI	GGTGA	3 cut(s)	56, 833, 927
AvaII	GGWCC	3 cut(s)	210, 302, 436
BaeGI	GKGCMC	1 cut(s)	881
BaeI	ACNNNNGTAYC	4 cut(s)	117, 117, 150, 150
BanII	GRGCYC	1 cut(s)	881
BbsI	GAAGAC	1 cut(s)	829
BbvI	GCAGC	1 cut(s)	932
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	3 cut(s)	274, 280, 481
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	2 cut(s)	553, 823
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	893
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	3 cut(s)	268, 469, 921
BlsI	GCNGC	3 cut(s)	269, 470, 922
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	3 cut(s)	210, 302, 436
BmgT120I	GGNCC	5 cut(s)	210, 302, 436, 877, 878
BmiI	GGNNCC	5 cut(s)	303, 304, 681, 879, 880
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	829
Bsa29I	ATCGAT	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	26
BsaWI	WCCGGW	4 cut(s)	369, 378, 438, 937
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 445, 799
Bse118I	RCCGGY	3 cut(s)	225, 369, 438
Bse1I	ACTGG	2 cut(s)	101, 859
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	245
BseCI	ATCGAT	1 cut(s)	650
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	3 cut(s)	250, 445, 799
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	101, 859
BseRI	GAGGAG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	1 cut(s)	932
BseYI	CCCAGC	1 cut(s)	427
Bsh1285I	CGRYCG	1 cut(s)	650
BshFI	GGCC	2 cut(s)	854, 879
BshTI	ACCGGT	2 cut(s)	369, 438
BshVI	ATCGAT	1 cut(s)	650
BsiEI	CGRYCG	1 cut(s)	650
BsiSI	CCGG	6 cut(s)	226, 335, 370, 379, 439, 938
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	250, 445, 799
BsmAI	GTCTC	1 cut(s)	500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	2 cut(s)	854, 879
Bsp120I	GGGCCC	1 cut(s)	877
Bsp1286I	GDGCHC	1 cut(s)	881
Bsp143I	GATC	6 cut(s)	525, 553, 625, 647, 775, 823
BspACI	CCGC	6 cut(s)	156, 213, 223, 267, 468, 484
BspANI	GGCC	2 cut(s)	854, 879
BspCNI	CTCAG	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	650
BspLI	GGNNCC	5 cut(s)	303, 304, 681, 879, 880
BspPI	GGATC	1 cut(s)	770
BsrFI	RCCGGY	3 cut(s)	225, 369, 438
BsrI	ACTGG	2 cut(s)	101, 859
BssAI	RCCGGY	3 cut(s)	225, 369, 438
BssMI	GATC	6 cut(s)	525, 553, 625, 647, 775, 823
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	5 cut(s)	175, 199, 455, 511, 633
Bst6I	CTCTTC	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	918
BstDEI	CTNAG	2 cut(s)	43, 794
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstKTI	GATC	6 cut(s)	528, 556, 628, 650, 778, 826
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	6 cut(s)	525, 553, 625, 647, 775, 823
BstMCI	CGRYCG	1 cut(s)	650
BstMWI	GCNNNNNNNGC	5 cut(s)	267, 340, 424, 468, 770
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	1 cut(s)	920
BstSCI	CCNGG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	881
BstV1I	GCAGC	1 cut(s)	932
BstV2I	GAAGAC	1 cut(s)	829
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
Bsu15I	ATCGAT	1 cut(s)	650
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	854, 879
BsuTUI	ATCGAT	1 cut(s)	650
Cac8I	GCNNGC	1 cut(s)	918
Cfr10I	RCCGGY	3 cut(s)	225, 369, 438
Cfr13I	GGNCC	5 cut(s)	210, 302, 436, 877, 878
ClaI	ATCGAT	1 cut(s)	650
Csp6I	GTAC	4 cut(s)	328, 442, 451, 481
CspAI	ACCGGT	2 cut(s)	369, 438
CviAII	CATG	4 cut(s)	487, 623, 850, 917
CviQI	GTAC	4 cut(s)	328, 442, 451, 481
DdeI	CTNAG	2 cut(s)	43, 794
DpnI	GATC	6 cut(s)	527, 555, 627, 649, 777, 825
DpnII	GATC	6 cut(s)	525, 553, 625, 647, 775, 823
DraIII	CACNNNGTG	1 cut(s)	760
DrdI	GACNNNNNNGTC	1 cut(s)	156
DseDI	GACNNNNNNGTC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	881
Eco47I	GGWCC	3 cut(s)	210, 302, 436
Eco57I	CTGAAG	2 cut(s)	130, 440
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoO109I	RGGNCCY	2 cut(s)	302, 878
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	881
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	4 cut(s)	490, 626, 853, 920
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	4 cut(s)	486, 622, 849, 916
FbaI	TGATCA	2 cut(s)	553, 823
Fnu4HI	GCNGC	3 cut(s)	268, 469, 921
FriOI	GRGCYC	1 cut(s)	881
Fsp4HI	GCNGC	3 cut(s)	268, 469, 921
FspBI	CTAG	1 cut(s)	893
GluI	GCNGC	3 cut(s)	268, 469, 921
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	854, 879
HapII	CCGG	6 cut(s)	226, 335, 370, 379, 439, 938
Hin1II	CATG	4 cut(s)	490, 626, 853, 920
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	6 cut(s)	101, 117, 386, 601, 643, 932
HpaII	CCGG	6 cut(s)	226, 335, 370, 379, 439, 938
HphI	GGTGA	3 cut(s)	56, 833, 927
Hpy166II	GTNNAC	6 cut(s)	178, 202, 256, 328, 436, 451
Hpy188I	TCNGA	3 cut(s)	116, 149, 376
Hpy188III	TCNNGA	7 cut(s)	208, 352, 503, 529, 683, 800, 827
Hpy8I	GTNNAC	6 cut(s)	178, 202, 256, 328, 436, 451
HpyAV	CCTTC	3 cut(s)	511, 556, 704
HpyCH4III	ACNGT	5 cut(s)	175, 199, 455, 511, 633
HpyCH4IV	ACGT	2 cut(s)	324, 330
HpyCH4V	TGCA	3 cut(s)	171, 865, 920
HpyF10VI	GCNNNNNNNGC	5 cut(s)	267, 340, 424, 468, 770
HpyF3I	CTNAG	2 cut(s)	43, 794
HpySE526I	ACGT	2 cut(s)	324, 330
Hsp92II	CATG	4 cut(s)	490, 626, 853, 920
KflI	GGGWCCC	1 cut(s)	302
Ksp22I	TGATCA	2 cut(s)	553, 823
Kzo9I	GATC	6 cut(s)	525, 553, 625, 647, 775, 823
LmnI	GCTCC	1 cut(s)	381
Lsp1109I	GCAGC	1 cut(s)	932
MaeI	CTAG	1 cut(s)	893
MaeII	ACGT	2 cut(s)	324, 330
MalI	GATC	6 cut(s)	527, 555, 627, 649, 777, 825
MboI	GATC	6 cut(s)	525, 553, 625, 647, 775, 823
MboII	GAAGA	5 cut(s)	76, 340, 433, 592, 829
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	881
MluCI	AATT	4 cut(s)	583, 737, 813, 925
MlyI	GAGTC	2 cut(s)	395, 652
MnlI	CCTC	9 cut(s)	44, 50, 80, 140, 406, 417, 559, 570, 703
MseI	TTAA	1 cut(s)	982
MspI	CCGG	6 cut(s)	226, 335, 370, 379, 439, 938
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	5 cut(s)	267, 340, 424, 468, 770
NdeII	GATC	6 cut(s)	525, 553, 625, 647, 775, 823
NlaIII	CATG	4 cut(s)	490, 626, 853, 920
NlaIV	GGNNCC	5 cut(s)	303, 304, 681, 879, 880
NspI	RCATGY	1 cut(s)	920
PaeI	GCATGC	1 cut(s)	920
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	101, 117, 601, 932
PinAI	ACCGGT	2 cut(s)	369, 438
PkrI	GCNGC	3 cut(s)	269, 470, 922
Ple19I	CGATCG	1 cut(s)	650
PleI	GAGTC	2 cut(s)	394, 651
PpsI	GAGTC	2 cut(s)	394, 651
Ppu21I	YACGTR	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	5 cut(s)	303, 304, 681, 879, 880
PspOMI	GGGCCC	1 cut(s)	877
PspPI	GGNCC	5 cut(s)	210, 302, 436, 877, 878
PspPPI	RGGWCCY	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	775
PvuI	CGATCG	1 cut(s)	650
RsaI	GTAC	4 cut(s)	329, 443, 452, 482
RsaNI	GTAC	4 cut(s)	328, 442, 451, 481
SaqAI	TTAA	1 cut(s)	982
SatI	GCNGC	3 cut(s)	268, 469, 921
Sau3AI	GATC	6 cut(s)	525, 553, 625, 647, 775, 823
Sau96I	GGNCC	5 cut(s)	210, 302, 436, 877, 878
SchI	GAGTC	2 cut(s)	395, 652
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	881
SetI	ASST	8 cut(s)	42, 72, 327, 333, 464, 522, 705, 747
SinI	GGWCC	3 cut(s)	210, 302, 436
SphI	GCATGC	1 cut(s)	920
Sse9I	AATT	4 cut(s)	583, 737, 813, 925
SsiI	CCGC	6 cut(s)	156, 213, 223, 267, 468, 484
SspMI	CTAG	1 cut(s)	893
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	5 cut(s)	175, 199, 455, 511, 633
TaiI	ACGT	2 cut(s)	327, 333
TaqI	TCGA	3 cut(s)	231, 646, 650
TasI	AATT	4 cut(s)	583, 737, 813, 925
TauI	GCSGC	2 cut(s)	270, 471
TfiI	GAWTC	4 cut(s)	101, 117, 601, 932
Tru1I	TTAA	1 cut(s)	982
Tru9I	TTAA	1 cut(s)	982
TseI	GCWGC	1 cut(s)	920
VpaK11BI	GGWCC	3 cut(s)	210, 302, 436
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	2 cut(s)	583, 925
XceI	RCATGY	1 cut(s)	920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.