Rh2AG528200

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004181
Physical Location & Seq
Reverse (-)
75678222 .. 75687725
9504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG528200.1

Sequence Viewer

Length: 258 bp
ATGGATATGACAGGTGAGACGGAGGAGGAATTCTCAACCAGATTAGCCAATAATTTGGAGAATCTTATCCTCAAAGAAGGACCAGAGACTATTGCTGCGTTCATTGCCGAACCTGTCATAGGTGCAGGAGGTGTGATACCTCCCCCTGTAACTTATTTTGACAAGGTCATACCTTCTGTGAAAGAAACCAGATTTCCAAGCCTATTGCGAGCAATTGAAACCAGATTTCCAAGCCTTTTGGGAGCAATTCAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615
KEGG Pathways
Metabolic & Signaling
ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

85

Amino Acids

9.26

Weight (kDa)

4.55

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 4 - 56 1.9e-08 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 218, 251
Alw26I GTCTC 2 cut(s) 11, 80
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 82
BcoDI GTCTC 2 cut(s) 11, 80
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 17, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 102
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 11, 80
BsmBI CGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 255
BstENI CCTNNNNNAGG 1 cut(s) 117
BstMAI GTCTC 2 cut(s) 11, 80
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 80
CviJI RGCY 3 cut(s) 47, 201, 234
CviKI_1 RGCY 3 cut(s) 47, 201, 234
DdeI CTNAG 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 29
Esp3I CGTCTC 1 cut(s) 11
FaiI YATR 3 cut(s) 8, 119, 170
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HinfI GANTC 1 cut(s) 61
HphI GGTGA 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 71, 183
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 255
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 7 cut(s) 52, 96, 111, 126, 159, 202, 235
Lsp1109I GCAGC 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 148
MfeI CAATTG 1 cut(s) 213
MluCI AATT 4 cut(s) 29, 52, 213, 246
MnlI CCTC 5 cut(s) 16, 19, 80, 122, 150
MunI CAATTG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 164
PkrI GCNGC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 164
SatI GCNGC 1 cut(s) 96
Sau96I GGNCC 1 cut(s) 80
SetI ASST 8 cut(s) 16, 115, 124, 133, 142, 168, 175, 256
SinI GGWCC 1 cut(s) 80
Sse9I AATT 4 cut(s) 29, 52, 213, 246
TasI AATT 4 cut(s) 29, 52, 213, 246
TfiI GAWTC 1 cut(s) 61
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 91
TspGWI ACGGA 1 cut(s) 35
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.