Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004181

Physical Location & Seq

Genomic Coordinates Forward (+)

55540778 .. 55563429

Gene Structure 22652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG391800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACACATAAATATCAATCGGATACATATGAAGGTGAGTCGGAGGAGGAATTCTCAACCAGATTAGCCAATAATTTGGAGAATCTTATCCTCAAAGAAGGACCAGAGACTATTGCTGCGTTCATTGCCGAACCTGACATAGGTGCAGGAGGTGTGATACCTCCCCCTGCAACTGATTTTGACAAGGAGGCATTATTGGTCGGAGCTGTTTTCTCCCATCTTGCTAAGAGAGGAAGAGTGAAGTCGGTTACTCGAGCAGCAAGGCATATAAAAATTGAAAAAGAACAGCTAGTGATTGATACCCCACCAGCCTCCACCATCGCGCCGCCAAGCCCGCCGCGCCTCCGCTTCCCCTGGTTTCCGGTCACCGACGAGACACTATTGCAGACCCAGCACCGTCGCGGCAAACTCACCGCGACAACCTCAAAACCCGACCCAGGACGACTCCCTCCGCCGCGCACTTTGATTCCCGTTCACGATATTGCCTTGTGGCAAGATCAAAACAGCGGATCCAACCGCAGAACCAACCAGAAAGGGTGCGAAATCCAGCCACACAACGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

187

Amino Acids

20.67

Weight (kDa)

7.03

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22200 AT3G22200
fragaria_vesca	FvH4_6g39530 FvH4_6g39560
malus_domestica	MD09G1139200.v1.1 MD17G1128700.v1.1
prunus_persica	Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1
pyrus_communis	pycom09g05980 pycom17g12080
rosa_chinensis	RchiOBHm_Chr1g0318031 RchiOBHm_Chr2g0136861 RchiOBHm_Chr2g0153591 RchiOBHm_Chr4g0413181 RchiOBHm_Chr7g0235481
rosa_laevigata	RLG00000020713
rosa_multiflora	Rmu_sc0002187.1_g000020 Rmu_sc0018730.1_g000001 Rmu_ssc0000024.1_g000016
rosa_roxburghii	Rroxscaffold_2G00094890 Rroxscaffold_4G00282830
rosa_rugosa	Rorug02G0440800
rosa_samantha	Rh2AG384900 Rh2AG528200 Rh2BG391800 Rh2BG514300 Rh2CG512500 Rh2DG526100 Rh4CG188400 Rh6AG130800
rosa_wichuraiana	Rw2G041360 Rw7G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	323, 340, 402, 416, 457
AclWI	GGATC	2 cut(s)	504, 517
AcsI	RAATTY	1 cut(s)	50
AfiI	CCNNNNNNNGG	3 cut(s)	140, 437, 557
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	353, 436
AluBI	AGCT	2 cut(s)	206, 289
AluI	AGCT	2 cut(s)	206, 289
Alw26I	GTCTC	2 cut(s)	101, 368
AlwI	GGATC	2 cut(s)	504, 517
Ama87I	CYCGRG	1 cut(s)	252
ApeKI	GCWGC	2 cut(s)	116, 257
ApoI	RAATTY	1 cut(s)	50
AspLEI	GCGC	3 cut(s)	325, 342, 459
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	47, 358, 403
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	101
BamHI	GGATCC	1 cut(s)	509
BbvI	GCAGC	2 cut(s)	103, 269
BccI	CCATC	2 cut(s)	225, 326
BciT130I	CCWGG	2 cut(s)	355, 438
BciVI	GTATCC	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	101, 368
BfaI	CTAG	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	6 cut(s)	117, 258, 326, 338, 403, 455
BlsI	GCNGC	6 cut(s)	118, 259, 327, 339, 404, 456
Bme1390I	CCNGG	2 cut(s)	355, 438
Bme18I	GGWCC	1 cut(s)	101
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	2 cut(s)	355, 438
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BsaJI	CCNNGG	2 cut(s)	353, 436
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 437, 557
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	355, 438
BseDI	CCNNGG	2 cut(s)	353, 436
BseLI	CCNNNNNNNGG	3 cut(s)	140, 437, 557
BseMI	GCAATG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	103, 269
BseYI	CCCAGC	1 cut(s)	390
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	5 cut(s)	323, 340, 402, 416, 457
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	362
BslI	CCNNNNNNNGG	3 cut(s)	140, 437, 557
BsmAI	GTCTC	2 cut(s)	101, 368
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	496, 509
BspFNI	CGCG	5 cut(s)	323, 340, 402, 416, 457
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	2 cut(s)	504, 517
BsrDI	GCAATG	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	353, 436
BssMI	GATC	2 cut(s)	496, 509
Bst2UI	CCWGG	2 cut(s)	355, 438
Bst4CI	ACNGT	1 cut(s)	398
Bst6I	CTCTTC	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	225
BstEII	GGTNACC	1 cut(s)	364
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstFNI	CGCG	5 cut(s)	323, 340, 402, 416, 457
BstHHI	GCGC	3 cut(s)	325, 342, 459
BstKTI	GATC	2 cut(s)	499, 512
BstMAI	GTCTC	2 cut(s)	101, 368
BstMBI	GATC	2 cut(s)	496, 509
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 334, 339, 391
BstNI	CCWGG	2 cut(s)	355, 438
BstPI	GGTNACC	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	353, 436
BstUI	CGCG	5 cut(s)	323, 340, 402, 416, 457
BstV1I	GCAGC	2 cut(s)	103, 269
BstX2I	RGATCY	1 cut(s)	509
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	16
BtgZI	GCGATG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	3 cut(s)	325, 342, 459
Cfr13I	GGNCC	1 cut(s)	101
CviJI	RGCY	6 cut(s)	68, 206, 289, 311, 333, 550
CviKI_1	RGCY	6 cut(s)	68, 206, 289, 311, 333, 550
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	498, 511
DpnII	GATC	2 cut(s)	496, 509
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	252
Eco91I	GGTNACC	1 cut(s)	364
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoO65I	GGTNACC	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	353, 436
FaiI	YATR	6 cut(s)	9, 28, 30, 140, 267, 269
FauI	CCCGC	1 cut(s)	342
FauNDI	CATATG	1 cut(s)	28
Fnu4HI	GCNGC	6 cut(s)	117, 258, 326, 338, 403, 455
Fsp4HI	GCNGC	6 cut(s)	117, 258, 326, 338, 403, 455
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	3 cut(s)	324, 341, 458
GluI	GCNGC	6 cut(s)	117, 258, 326, 338, 403, 455
GsaI	CCCAGC	1 cut(s)	394
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	3 cut(s)	325, 342, 459
Hin6I	GCGC	3 cut(s)	323, 340, 457
HinP1I	GCGC	3 cut(s)	323, 340, 457
HinfI	GANTC	4 cut(s)	38, 82, 444, 466
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	47, 358, 403
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	3 cut(s)	22, 43, 203
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	2 cut(s)	374, 402
HpyAV	CCTTC	2 cut(s)	26, 92
HpyCH4III	ACNGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	146, 170, 385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 334, 339, 391
HpyF3I	CTNAG	1 cut(s)	225
HspAI	GCGC	3 cut(s)	323, 340, 457
Kzo9I	GATC	2 cut(s)	496, 509
LmnI	GCTCC	1 cut(s)	203
Lsp1109I	GCAGC	2 cut(s)	103, 269
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	2 cut(s)	247, 364
MalI	GATC	2 cut(s)	498, 511
MboI	GATC	2 cut(s)	496, 509
MboII	GAAGA	1 cut(s)	246
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	3 cut(s)	50, 73, 273
MlyI	GAGTC	2 cut(s)	47, 438
MmeI	TCCRAC	3 cut(s)	21, 181, 537
MspA1I	CMGCKG	1 cut(s)	507
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	2 cut(s)	355, 438
MvaI	CCWGG	2 cut(s)	355, 438
MvnI	CGCG	5 cut(s)	323, 340, 402, 416, 457
MwoI	GCNNNNNNNGC	4 cut(s)	125, 334, 339, 391
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	2 cut(s)	496, 509
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	364
PaeR7I	CTCGAG	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	82, 466
PkrI	GCNGC	6 cut(s)	118, 259, 327, 339, 404, 456
PleI	GAGTC	2 cut(s)	46, 438
PpsI	GAGTC	2 cut(s)	46, 438
Psp6I	CCWGG	2 cut(s)	353, 436
PspEI	GGTNACC	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	2 cut(s)	353, 436
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	101
PspXI	VCTCGAGB	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	509
SatI	GCNGC	6 cut(s)	117, 258, 326, 338, 403, 455
Sau3AI	GATC	2 cut(s)	496, 509
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	2 cut(s)	47, 438
ScrFI	CCNGG	2 cut(s)	355, 438
SetI	ASST	8 cut(s)	37, 136, 145, 154, 163, 208, 291, 425
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	101
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	50, 73, 273
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	353, 436
TaaI	ACNGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	50, 73, 273
TauI	GCSGC	4 cut(s)	328, 340, 405, 457
TfiI	GAWTC	2 cut(s)	82, 466
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	2 cut(s)	116, 257
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	45, 112
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	138
XapI	RAATTY	1 cut(s)	50
XhoI	CTCGAG	1 cut(s)	252
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.