Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004181

Physical Location & Seq

Genomic Coordinates Forward (+)

57492721 .. 57493122

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG384900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATAATTAAACCATCTTGGACCCAGATTGATACCCCAGCCACCACCATCGCGCCGCCAAGCCCGCCGCGCCTCCGCTTCCTCTGGTTTCCGGTCACCGACGAGACACTATTGCAGACCGAGCACCGTAGCGGCAAACTCACCGCGACAACCTCAAAACCCGACTCAGGACGACTCCCTCCGCCGCGCACTTTGATTCCCGTTCACGATATTGCCTTGTGGCAAGATCAAAACAGCGGATCCAACCGCAGAACCAACCAGAAAGGGTGCGAAATCCAGCCACACAACGGGTGCTTGCGTCGAGATCCCATCGGATCTGATCTGCCACAAACCCACTGTCTGTGCCCAATCCACCATCGACTGAAACCAAGACACAAGGAGCCCTTTCATCCTAAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

15.15

Weight (kDa)

9.76

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22200 AT3G22200
fragaria_vesca	FvH4_6g39530 FvH4_6g39560
malus_domestica	MD09G1139200.v1.1 MD17G1128700.v1.1
prunus_persica	Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1
pyrus_communis	pycom09g05980 pycom17g12080
rosa_chinensis	RchiOBHm_Chr1g0318031 RchiOBHm_Chr2g0136861 RchiOBHm_Chr2g0153591 RchiOBHm_Chr4g0413181 RchiOBHm_Chr7g0235481
rosa_laevigata	RLG00000020713
rosa_multiflora	Rmu_sc0002187.1_g000020 Rmu_sc0018730.1_g000001 Rmu_ssc0000024.1_g000016
rosa_roxburghii	Rroxscaffold_2G00094890 Rroxscaffold_4G00282830
rosa_rugosa	Rorug02G0440800
rosa_samantha	Rh2AG384900 Rh2AG528200 Rh2BG391800 Rh2BG514300 Rh2CG512500 Rh2DG526100 Rh4CG188400 Rh6AG130800
rosa_wichuraiana	Rw2G041360 Rw7G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	53, 70, 146, 187
AclWI	GGATC	4 cut(s)	234, 247, 299, 322
AcsI	RAATTY	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	167, 287
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	4 cut(s)	234, 247, 299, 322
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
AspLEI	GCGC	3 cut(s)	55, 72, 189
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	2 cut(s)	88, 133
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	126
BccI	CCATC	4 cut(s)	22, 56, 317, 363
BcoDI	GTCTC	1 cut(s)	98
BisI	GCNGC	4 cut(s)	56, 68, 133, 185
BlsI	GCNGC	4 cut(s)	57, 69, 134, 186
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	3 cut(s)	23, 241, 381
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 287
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	2 cut(s)	167, 287
BseMII	CTCAG	1 cut(s)	180
BseSI	GKGCMC	1 cut(s)	347
BseYI	CCCAGC	1 cut(s)	37
Bsh1236I	CGCG	4 cut(s)	53, 70, 146, 187
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	167, 287
BsmAI	GTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	126, 347, 384
Bsp143I	GATC	5 cut(s)	226, 239, 304, 314, 319
BspCNI	CTCAG	1 cut(s)	179
BspFNI	CGCG	4 cut(s)	53, 70, 146, 187
BspLI	GGNNCC	3 cut(s)	23, 241, 381
BspPI	GGATC	4 cut(s)	234, 247, 299, 322
BssMI	GATC	5 cut(s)	226, 239, 304, 314, 319
Bst4CI	ACNGT	2 cut(s)	128, 338
BstC8I	GCNNGC	2 cut(s)	65, 296
BstDEI	CTNAG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	4 cut(s)	53, 70, 146, 187
BstHHI	GCGC	3 cut(s)	55, 72, 189
BstKTI	GATC	5 cut(s)	229, 242, 307, 317, 322
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	5 cut(s)	226, 239, 304, 314, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 69, 121
BstPI	GGTNACC	1 cut(s)	94
BstSLI	GKGCMC	1 cut(s)	347
BstUI	CGCG	4 cut(s)	53, 70, 146, 187
BstX2I	RGATCY	3 cut(s)	239, 304, 314
BstYI	RGATCY	3 cut(s)	239, 304, 314
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	65, 296
CfoI	GCGC	3 cut(s)	55, 72, 189
Cfr13I	GGNCC	1 cut(s)	21
CseI	GACGC	1 cut(s)	287
CviJI	RGCY	4 cut(s)	41, 63, 280, 382
CviKI_1	RGCY	4 cut(s)	41, 63, 280, 382
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	5 cut(s)	228, 241, 306, 316, 321
DpnII	GATC	5 cut(s)	226, 239, 304, 314, 319
EciI	GGCGGA	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	21
Eco91I	GGTNACC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	384
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	56, 68, 133, 185
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	4 cut(s)	56, 68, 133, 185
GlaI	GCGC	3 cut(s)	54, 71, 188
GluI	GCNGC	4 cut(s)	56, 68, 133, 185
GsaI	CCCAGC	1 cut(s)	41
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	3 cut(s)	55, 72, 189
Hin6I	GCGC	3 cut(s)	53, 70, 187
HinP1I	GCGC	3 cut(s)	53, 70, 187
HinfI	GANTC	3 cut(s)	164, 174, 196
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	2 cut(s)	88, 133
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	314, 319
Hpy188III	TCNNGA	3 cut(s)	168, 206, 302
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	2 cut(s)	104, 303
HpyCH4III	ACNGT	2 cut(s)	128, 338
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 69, 121
HpyF3I	CTNAG	1 cut(s)	166
HspAI	GCGC	3 cut(s)	53, 70, 187
Kzo9I	GATC	5 cut(s)	226, 239, 304, 314, 319
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	7 cut(s)	38, 51, 70, 105, 153, 272, 290
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	5 cut(s)	228, 241, 306, 316, 321
MboI	GATC	5 cut(s)	226, 239, 304, 314, 319
MflI	RGATCY	3 cut(s)	239, 304, 314
MhlI	GDGCHC	3 cut(s)	126, 347, 384
MluCI	AATT	2 cut(s)	6, 395
MlyI	GAGTC	2 cut(s)	158, 168
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	4 cut(s)	83, 92, 163, 189
MseI	TTAA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	1 cut(s)	92
MvnI	CGCG	4 cut(s)	53, 70, 146, 187
MwoI	GCNNNNNNNGC	3 cut(s)	64, 69, 121
NdeII	GATC	5 cut(s)	226, 239, 304, 314, 319
NlaIV	GGNNCC	3 cut(s)	23, 241, 381
NmuCI	GTSAC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	4 cut(s)	57, 69, 134, 186
PleI	GAGTC	2 cut(s)	158, 168
PpsI	GAGTC	2 cut(s)	158, 168
PspEI	GGTNACC	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	37
PspN4I	GGNNCC	3 cut(s)	23, 241, 381
PspPI	GGNCC	1 cut(s)	21
PsuI	RGATCY	3 cut(s)	239, 304, 314
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	4 cut(s)	56, 68, 133, 185
Sau3AI	GATC	5 cut(s)	226, 239, 304, 314, 319
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	2 cut(s)	158, 168
SduI	GDGCHC	3 cut(s)	126, 347, 384
SetI	ASST	1 cut(s)	155
SinI	GGWCC	1 cut(s)	21
Sse9I	AATT	2 cut(s)	6, 395
TaaI	ACNGT	2 cut(s)	128, 338
TaqI	TCGA	2 cut(s)	301, 358
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	6, 395
TauI	GCSGC	4 cut(s)	58, 70, 135, 187
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.