RchiOBHm_Chr2g0136861

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004181
Physical Location & Seq
Forward (+)
54168246 .. 54170527
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50764

Sequence Viewer

Length: 471 bp
ATGTTCAAGTACTTTGTGAAGCTAGTTTGGTATTATAATAATGCACTTGGACGAACAGATAAAAAGAAATTCATAGCTCGACATAAATCGTATATTCACTACTCAATTAATTTGTTTTCTCCTTATTTTCTCTGGTCATTGTACACAAGTCCTTTGATGTTATCTTTGTATTATGACAGGTACCATGGTTCAACTTTGATAGCAGCAAGCCTTTCTGGCCTCCCAGCTCTGCATCAAAAATTTGATCTTCCTGCTCCATTTGTATTGCACACTGATTGCCCCCATTATCGGCGCTATCACCAGCCAGGTGAGTCGGAGGAGGAATTCTCAACCAGATTAGCCAATAATTTGGAGAATCTTATCCTCAAAGAAGGACCAGAGACTATTGCTGCGTTCATTGCCGAACCTGACATAGGTGCAGGAGGTGTGATACGTCCCCCTGCAACTGATTTTGACAAGGTGAGCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615
KEGG Pathways
Metabolic & Signaling
ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

156

Amino Acids

17.97

Weight (kDa)

7.86

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 60 - 153 2.2e-07 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AcsI RAATTY 3 cut(s) 68, 239, 323
AfaI GTAC 3 cut(s) 11, 143, 182
AfiI CCNNNNNNNGG 2 cut(s) 288, 413
AgsI TTSAA 2 cut(s) 7, 192
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 4 cut(s) 22, 77, 227, 465
AluI AGCT 4 cut(s) 22, 77, 227, 465
Alw26I GTCTC 1 cut(s) 374
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 203, 389
ApoI RAATTY 3 cut(s) 68, 239, 323
AseI ATTAAT 1 cut(s) 108
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 2 cut(s) 290, 320
AvaII GGWCC 1 cut(s) 374
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BanI GGYRCC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 215, 376
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 23
BfoI RGCGCY 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 216
BisI GCNGC 2 cut(s) 204, 390
BlsI GCNGC 2 cut(s) 205, 391
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 413
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 288, 413
BseMI GCAATG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 215, 376
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 180
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 2 cut(s) 288, 413
BsmAI GTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 420
BsnI GGCC 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 1 cut(s) 244
Bsp19I CCATGG 1 cut(s) 184
BspANI GGCC 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 306
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 411
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 216, 398
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstV1I GCAGC 2 cut(s) 215, 376
BstXI CCANNNNNNTGG 1 cut(s) 349
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 208
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 374
Csp6I GTAC 3 cut(s) 10, 142, 181
CviAII CATG 1 cut(s) 185
CviJI RGCY 8 cut(s) 22, 77, 210, 219, 227, 304, 341, 465
CviKI_1 RGCY 8 cut(s) 22, 77, 210, 219, 227, 304, 341, 465
CviQI GTAC 3 cut(s) 10, 142, 181
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 374
EcoNI CCTNNNNNAGG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 188
FaiI YATR 8 cut(s) 36, 74, 84, 93, 174, 186, 413, 469
FalI AAGNNNNNCTT 1 cut(s) 449
FaqI GGGAC 1 cut(s) 420
FatI CATG 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 204, 390
Fsp4HI GCNGC 2 cut(s) 204, 390
FspBI CTAG 1 cut(s) 23
GlaI GCGC 1 cut(s) 293
GluI GCNGC 2 cut(s) 204, 390
GsaI CCCAGC 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 1 cut(s) 219
HhaI GCGC 1 cut(s) 294
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HinfI GANTC 2 cut(s) 311, 355
HphI GGTGA 2 cut(s) 290, 320
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 5 cut(s) 44, 232, 268, 419, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 398
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 1 cut(s) 292
KpnI GGTACC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 2 cut(s) 215, 376
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 433
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 239
MluCI AATT 6 cut(s) 68, 105, 109, 239, 323, 346
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 230, 310, 313, 374, 416
MseI TTAA 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 216, 398
NcoI CCATGG 1 cut(s) 184
NdeII GATC 1 cut(s) 244
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 2 cut(s) 205, 391
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 108
PsiI TTATAA 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 374
RsaI GTAC 3 cut(s) 11, 143, 182
RsaNI GTAC 3 cut(s) 10, 142, 181
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 204, 390
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 374
ScaI AGTACT 1 cut(s) 11
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 306
SfaNI GCATC 1 cut(s) 241
SinI GGWCC 1 cut(s) 374
Sse9I AATT 6 cut(s) 68, 105, 109, 239, 323, 346
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 184
TaiI ACGT 1 cut(s) 436
TaqI TCGA 1 cut(s) 79
TasI AATT 6 cut(s) 68, 105, 109, 239, 323, 346
TatI WGTACW 2 cut(s) 9, 141
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 277
TseI GCWGC 2 cut(s) 203, 389
TspDTI ATGAA 2 cut(s) 61, 385
TspRI CASTG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 374
VspI ATTAAT 1 cut(s) 108
XagI CCTNNNNNAGG 1 cut(s) 411
XapI RAATTY 3 cut(s) 68, 239, 323
XspI CTAG 1 cut(s) 23
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.