RchiOBHm_Chr4g0413181

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004181
Physical Location & Seq
Reverse (-)
37315341 .. 37317930
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38373

Sequence Viewer

Length: 414 bp
ATGGTTCCTGAGGCGAAGACCAATTCTTTTCTTAGGTTGAGATGGGTGTCCCTCCGTTTCTGGTTATTCTTCATTCTGCGAAACCCTAGTTGCCAATTCAACACCGAATCCGGAGTTCTTCTTAGCATTCAGCCCACGGAGCTCAAATTCCCCTGTAAGTCCCTCCCAGCTCTGCATCAAAAATTTGATCTTCCTGCTCCATTTGTATTGCACACTGATTGCCCCCATTATTGGCGCTATCACCAGCCAGGTGAGTCGGAGGAGGAATTCTCAACCAGATTAGCCAATAATTTGGAGAATCTTATCCTCAAAGAAGGACCAGAGACTATTGCTGCGTTCATTGCCGAACCTGTCATAGGTGCAGGAGGTGTGATACCTCCCCCTGCAACTGATTTTGACAAGGTGAGCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615
KEGG Pathways
Metabolic & Signaling
ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

137

Amino Acids

15.54

Weight (kDa)

5.77

Isoelectric Point (pI)

61.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 85 - 135 1.2e-06 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 110
AcsI RAATTY 3 cut(s) 146, 182, 266
AfiI CCNNNNNNNGG 2 cut(s) 231, 356
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 3 cut(s) 142, 170, 408
AluI AGCT 3 cut(s) 142, 170, 408
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 3 cut(s) 146, 182, 266
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 233, 263
AvaII GGWCC 1 cut(s) 317
AxyI CCTNAGG 1 cut(s) 9
BanII GRGCYC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 319
BccI CCATC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 254, 286
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 356
Bse21I CCTNAGG 1 cut(s) 9
Bse3DI GCAATG 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 110
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 231, 356
BseMI GCAATG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 319
BseYI CCCAGC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 2 cut(s) 34, 145
BslI CCNNNNNNNGG 2 cut(s) 231, 356
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 2 cut(s) 34, 145
BsmI GAATGC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 110
Bsp143I GATC 1 cut(s) 187
BspEI TCCGGA 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 9, 32, 122
BstDSI CCRYGG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 354
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 2 cut(s) 139, 341
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 23
BstXI CCANNNNNNTGG 1 cut(s) 292
Bsu36I CCTNAGG 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 213
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 317
CviJI RGCY 6 cut(s) 133, 142, 170, 247, 284, 408
CviKI_1 RGCY 6 cut(s) 133, 142, 170, 247, 284, 408
DdeI CTNAG 3 cut(s) 9, 32, 122
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
Ecl136II GAGCTC 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 9
EcoICRI GAGCTC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 144
FaiI YATR 2 cut(s) 356, 412
FalI AAGNNNNNCTT 1 cut(s) 392
FaqI GGGAC 2 cut(s) 34, 145
Fnu4HI GCNGC 1 cut(s) 333
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 1 cut(s) 87
GlaI GCGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 333
GsaI CCCAGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 238
HapII CCGG 1 cut(s) 111
HhaI GCGC 1 cut(s) 237
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HinfI GANTC 3 cut(s) 107, 254, 298
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 233, 263
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 8, 111
HpyAV CCTTC 1 cut(s) 308
HpyCH4V TGCA 4 cut(s) 175, 211, 362, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 341
HpyF3I CTNAG 3 cut(s) 9, 32, 122
HspAI GCGC 1 cut(s) 235
Kpn2I TCCGGA 1 cut(s) 110
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 2 cut(s) 139, 202
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 87
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 4 cut(s) 28, 61, 110, 182
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 6 cut(s) 22, 95, 146, 182, 266, 289
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 8 cut(s) 4, 62, 173, 253, 256, 317, 359, 387
MroI TCCGGA 1 cut(s) 110
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 139, 341
NdeII GATC 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 6
PctI GAATGC 1 cut(s) 126
PfeI GAWTC 2 cut(s) 107, 298
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 166
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 317
SacI GAGCTC 1 cut(s) 144
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 1 cut(s) 187
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 1 cut(s) 317
Sse9I AATT 6 cut(s) 22, 95, 146, 182, 266, 289
SspMI CTAG 1 cut(s) 87
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 247
TasI AATT 6 cut(s) 22, 95, 146, 182, 266, 289
TfiI GAWTC 2 cut(s) 107, 298
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 61, 328
TspGWI ACGGA 2 cut(s) 44, 152
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 317
XagI CCTNNNNNAGG 1 cut(s) 354
XapI RAATTY 3 cut(s) 146, 182, 266
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.