Rh4CG188400

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004181
Physical Location & Seq
Reverse (-)
40721092 .. 40733926
12835 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG188400.1

Sequence Viewer

Length: 234 bp
ATGAGTTATCCGCAAAAAATTCATATTCGACCAGTTCTATCAAACTTTATCTTGCTAATGGATATGACAGGTGAGTCGGAGGAGGAATTCTCAACCAGATTAGCCAATAATTTGGAGAATCTTATCCTCAAAGAAGGACCAGAGACTATTGCTGCGTTCATTGCCGAACCTGTCATAGGTGCAGGAGGTGTGATACCTCCCCCTGCAACTGATTTTGACAAGGTGAGCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615
KEGG Pathways
Metabolic & Signaling
ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

77

Amino Acids

8.4

Weight (kDa)

4.44

Isoelectric Point (pI)

57.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 14 - 75 9.4e-08 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
AciI CCGC 1 cut(s) 11
AcsI RAATTY 2 cut(s) 18, 86
AfiI CCNNNNNNNGG 1 cut(s) 176
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 18, 86
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 137
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BplI GAGNNNNNCTC 2 cut(s) 74, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 159
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 137
BspACI CCGC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 137
CviJI RGCY 2 cut(s) 104, 228
CviKI_1 RGCY 2 cut(s) 104, 228
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 137
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 86
FaiI YATR 4 cut(s) 24, 65, 176, 232
FalI AAGNNNNNCTT 1 cut(s) 212
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HinfI GANTC 2 cut(s) 74, 118
HphI GGTGA 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 182, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
LpnPI CCDG 7 cut(s) 45, 54, 109, 153, 168, 183, 216
Lsp1109I GCAGC 1 cut(s) 139
MluCI AATT 3 cut(s) 18, 86, 109
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 5 cut(s) 73, 76, 137, 179, 207
MwoI GCNNNNNNNGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 137
SatI GCNGC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 83
SetI ASST 7 cut(s) 73, 172, 181, 190, 199, 225, 230
SgeI CNNG 8 cut(s) 44, 64, 81, 108, 152, 182, 195, 215
SinI GGWCC 1 cut(s) 137
Sse9I AATT 3 cut(s) 18, 86, 109
SsiI CCGC 1 cut(s) 11
TaqI TCGA 1 cut(s) 28
TasI AATT 3 cut(s) 18, 86, 109
TfiI GAWTC 1 cut(s) 118
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 11, 148
VpaK11BI GGWCC 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 174
XapI RAATTY 2 cut(s) 18, 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.