Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004181

Physical Location & Seq

Genomic Coordinates Reverse (-)

68656273 .. 68656549

Gene Structure 277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG512500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGATATGACAGGTGAGACGGAGGAGGAATTCTCAACCAGATTAGCCAATAATTTGGAGAATCTTATCCTCAAAGAAGGACCAGAGACTAGAATACTTTCTGTGCCTGACACAGTTTATTACCTTCAGATTGCTGCGTTCATTGCCGAACCTGTCATAGGTGCAGGAGGTGTGATACCTCCCCCTGTAACTTATTTTGACAAGGTGAGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

4.13

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22200 AT3G22200
fragaria_vesca	FvH4_6g39530 FvH4_6g39560
malus_domestica	MD09G1139200.v1.1 MD17G1128700.v1.1
prunus_persica	Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1
pyrus_communis	pycom09g05980 pycom17g12080
rosa_chinensis	RchiOBHm_Chr1g0318031 RchiOBHm_Chr2g0136861 RchiOBHm_Chr2g0153591 RchiOBHm_Chr4g0413181 RchiOBHm_Chr7g0235481
rosa_laevigata	RLG00000020713
rosa_multiflora	Rmu_sc0002187.1_g000020 Rmu_sc0018730.1_g000001 Rmu_ssc0000024.1_g000016
rosa_roxburghii	Rroxscaffold_2G00094890 Rroxscaffold_4G00282830
rosa_rugosa	Rorug02G0440800
rosa_samantha	Rh2AG384900 Rh2AG528200 Rh2BG391800 Rh2BG514300 Rh2CG512500 Rh2DG526100 Rh4CG188400 Rh6AG130800
rosa_wichuraiana	Rw2G041360 Rw7G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	158
AluBI	AGCT	1 cut(s)	210
AluI	AGCT	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	11, 80
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	11, 80
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	2 cut(s)	11, 80
BsmBI	CGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	11, 80
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	80
CviJI	RGCY	2 cut(s)	47, 210
CviKI_1	RGCY	2 cut(s)	47, 210
Eco47I	GGWCC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	11
FaiI	YATR	3 cut(s)	8, 158, 214
FalI	AAGNNNNNCTT	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	61
HphI	GGTGA	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	129
HpyAV	CCTTC	2 cut(s)	71, 134
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
LpnPI	CCDG	6 cut(s)	52, 96, 120, 150, 165, 198
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	187
MluCI	AATT	2 cut(s)	29, 52
MnlI	CCTC	5 cut(s)	16, 19, 80, 161, 189
MroXI	GAANNNNTTC	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	80
SatI	GCNGC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	80
SetI	ASST	8 cut(s)	16, 126, 154, 163, 172, 181, 207, 212
SgeI	CNNG	8 cut(s)	24, 51, 95, 102, 119, 164, 177, 197
SinI	GGWCC	1 cut(s)	80
Sse9I	AATT	2 cut(s)	29, 52
SspMI	CTAG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	115
TasI	AATT	2 cut(s)	29, 52
TfiI	GAWTC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	80
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.