Rh6AG130800

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004181
Physical Location & Seq
Forward (+)
19736401 .. 19767153
30753 bp
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UTR
Exon/CDS
Intron
Rh6AG130800.1

Sequence Viewer

Length: 630 bp
ATGGCGACCATATTTGGTGGAATGCCGACCGTGGTGGTGATCGTGCTAGTGATTGTAGTAAGGGTTGCAGTAGTGGCAAAGAGGAGTTGGGATCCCGTGATGGTGGTTGATGTGGTCCATTTAAAAGAAAGAAAAGGAAAGACATTTGAAAGCAGCAATCCCACTAACCTTGGTCCAAAGGTTGAGGATGTGAGGAAGCCCGTCAATCCATTTGTATTTCTTTCCCCGCTAATTCTTGGAGCAACTGCAGGAACTTACGATGTACCATGGTTCAACTTTGATAGCAGCAAGCCTTTCTGGATTCATATTCGACCAGTTCTATCAAACTTTATCTTGCTAATGGATATGACAGGTGAGTCGGAGGAGGAATTCTCAACCAGATTAGCCAATAATTTGGAGAATCTTATCCTCAAAGAAGGACCAGAGACTATTGCTGCGTTCATTGCCGAACCTGTCATAGGTGCAGGAGGTGTGATACCTCCCCCTGCAACTGATTTTGACAAGTGTCAAATTGGAACAAGGATAAGTGACAACACTAATCGAGGAAAAGGGCACTATCAAAAGAGCGATTTACAAGAACAAGGCTGGAGAGGAGATGAGAACATATGCTCCACTAACAATAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

209

Amino Acids

23.0

Weight (kDa)

5.43

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_3 PF00202 114 - 167 1.4e-06 Aminotransferase class-III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 355
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 86, 99
AcsI RAATTY 1 cut(s) 368
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 458
AgsI TTSAA 2 cut(s) 149, 274
AloI GAACNNNNNNTCC 2 cut(s) 593, 625
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 2 cut(s) 86, 99
ApeKI GCWGC 3 cut(s) 153, 285, 434
ApoI RAATTY 1 cut(s) 368
AspS9I GGNCC 3 cut(s) 115, 173, 419
AsuHPI GGTGA 2 cut(s) 49, 365
AvaII GGWCC 3 cut(s) 115, 173, 419
BaeGI GKGCMC 1 cut(s) 555
BamHI GGATCC 1 cut(s) 91
BbvI GCAGC 3 cut(s) 165, 297, 421
BccI CCATC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 3 cut(s) 154, 286, 435
BlsI GCNGC 3 cut(s) 155, 287, 436
Bme18I GGWCC 3 cut(s) 115, 173, 419
BmgT120I GGNCC 3 cut(s) 115, 173, 419
BmiI GGNNCC 1 cut(s) 93
BoxI GACNNNNGTC 1 cut(s) 504
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 607
BsaJI CCNNGG 3 cut(s) 30, 169, 266
BsaXI ACNNNNNCTCC 2 cut(s) 593, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 30, 169, 266
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMI GCAATG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 3 cut(s) 97, 377, 606
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 3 cut(s) 165, 297, 421
BsgI GTGCAG 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 30
BsiEI CGRYCG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 2 cut(s) 39, 91
Bsp19I CCATGG 1 cut(s) 266
BspACI CCGC 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 250
BspPI GGATC 2 cut(s) 86, 99
BsrDI GCAATG 1 cut(s) 441
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 30, 169, 266
BssMI GATC 2 cut(s) 39, 91
BssT1I CCWWGG 2 cut(s) 169, 266
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 290
BstDSI CCRYGG 2 cut(s) 30, 266
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 2 cut(s) 42, 94
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 2 cut(s) 39, 91
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 74, 443
BstPAI GACNNNNGTC 1 cut(s) 504
BstSFI CTRYAG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 555
BstV1I GCAGC 3 cut(s) 165, 297, 421
BstX2I RGATCY 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 394
BstYI RGATCY 1 cut(s) 91
BtgI CCRYGG 2 cut(s) 30, 266
BtsCI GGATG 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 290
Cfr13I GGNCC 3 cut(s) 115, 173, 419
Csp6I GTAC 1 cut(s) 263
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 1 cut(s) 267
CviJI RGCY 4 cut(s) 199, 292, 386, 585
CviKI_1 RGCY 4 cut(s) 199, 292, 386, 585
CviQI GTAC 1 cut(s) 263
DpnI GATC 2 cut(s) 41, 93
DpnII GATC 2 cut(s) 39, 91
DraI TTTAAA 1 cut(s) 123
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
Eco130I CCWWGG 2 cut(s) 169, 266
Eco47I GGWCC 3 cut(s) 115, 173, 419
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 368
EcoT14I CCWWGG 2 cut(s) 169, 266
ErhI CCWWGG 2 cut(s) 169, 266
FaeI CATG 1 cut(s) 270
FaiI YATR 7 cut(s) 11, 268, 306, 347, 458, 605, 607
FatI CATG 1 cut(s) 266
FauI CCCGC 1 cut(s) 234
FauNDI CATATG 1 cut(s) 605
Fnu4HI GCNGC 3 cut(s) 154, 286, 435
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 3 cut(s) 154, 286, 435
FspBI CTAG 1 cut(s) 47
GluI GCNGC 3 cut(s) 154, 286, 435
GsuI CTGGAG 1 cut(s) 607
Hin1II CATG 1 cut(s) 270
HinfI GANTC 3 cut(s) 301, 356, 400
HphI GGTGA 2 cut(s) 49, 365
Hpy188I TCNGA 1 cut(s) 361
Hpy188III TCNNGA 1 cut(s) 298
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 68, 248, 464, 488
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 443
Hsp92II CATG 1 cut(s) 270
Kzo9I GATC 2 cut(s) 39, 91
LmnI GCTCC 2 cut(s) 239, 614
Lsp1109I GCAGC 3 cut(s) 165, 297, 421
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 527
MalI GATC 2 cut(s) 41, 93
MboI GATC 2 cut(s) 39, 91
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 555
MluCI AATT 4 cut(s) 231, 368, 391, 510
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 339
MseI TTAA 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 74, 443
NcoI CCATGG 1 cut(s) 266
NdeI CATATG 1 cut(s) 605
NdeII GATC 2 cut(s) 39, 91
NlaIII CATG 1 cut(s) 270
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 527
PctI GAATGC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 301, 400
PkrI GCNGC 3 cut(s) 155, 287, 436
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PshAI GACNNNNGTC 1 cut(s) 504
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 3 cut(s) 115, 173, 419
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 122
SatI GCNGC 3 cut(s) 154, 286, 435
Sau3AI GATC 2 cut(s) 39, 91
Sau96I GGNCC 3 cut(s) 115, 173, 419
SchI GAGTC 1 cut(s) 365
SduI GDGCHC 1 cut(s) 555
SetI ASST 7 cut(s) 171, 183, 355, 454, 463, 472, 481
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 3 cut(s) 115, 173, 419
Sse9I AATT 4 cut(s) 231, 368, 391, 510
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 2 cut(s) 169, 266
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 310, 541
TasI AATT 4 cut(s) 231, 368, 391, 510
TfiI GAWTC 2 cut(s) 301, 400
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 3 cut(s) 153, 285, 434
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 2 cut(s) 293, 430
VpaK11BI GGWCC 3 cut(s) 115, 173, 419
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 1 cut(s) 368
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.