Rmu_sc0018730.1_g000001

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018730.1
OG0004181
Physical Location & Seq
Forward (+)
1795 .. 2369
575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018730.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atgttatctttgtattatgacaggtaccatggttcaactttgatagcagcaagcctttctggcctcccagctctgcatcaaaattttgatcttcctgctccatttgtattgcacactgattgcccccattattggtgctatcgccagccaggtgagtcggaggaggaattctcaaccagattagccaatgatttggagaatctgatcctcaaagaaggaccagagactattgctgcgttcattgccgaacctgacataggtgcaggaggtgtgatacctccccctgcaactgattttgacaaggtgagcttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001505 GO:0003006 GO:0003674 GO:0003824 GO:0003867 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005975 GO:0005984 GO:0005985 GO:0006020 GO:0006066 GO:0006082 GO:0006105 GO:0006520 GO:0006536 GO:0006538 GO:0006540 GO:0006541 GO:0006807 GO:0006935 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0008270 GO:0008483 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009311 GO:0009448 GO:0009450 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009865 GO:0009875 GO:0009932 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010183 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019482 GO:0019484 GO:0019751 GO:0019752 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0040007 GO:0040011 GO:0042133 GO:0042135 GO:0042221 GO:0042330 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0046395 GO:0046686 GO:0046872 GO:0046914 GO:0048364 GO:0048367 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0050897 GO:0050918 GO:0051704 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072329 GO:0098588 GO:0098609 GO:0098740 GO:0098805 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615
KEGG Pathways
Metabolic & Signaling
ko00250 ko00650 ko01100 ko01120 map00250 map00650 map01100 map01120
Pfam Domains
Protein Families
Aminotran_3

Protein Analysis

104

Amino Acids

11.45

Weight (kDa)

4.45

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 24
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 2 cut(s) 82, 167
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 132, 257
AgsI TTSAA 1 cut(s) 36
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 2 cut(s) 71, 309
AluI AGCT 2 cut(s) 71, 309
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 199
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 47, 233
ApoI RAATTY 2 cut(s) 82, 167
Asp718I GGTACC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 218
BaeI ACNNNNGTAYC 2 cut(s) 16, 49
BanI GGYRCC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 59, 220
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 218
BglI GCCNNNNNGGC 1 cut(s) 60
BisI GCNGC 2 cut(s) 48, 234
BlsI GCNGC 2 cut(s) 49, 235
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 26
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 85
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 257
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 132, 257
BseMI GCAATG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 59, 220
BseYI CCCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 132, 257
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 88, 204
Bsp19I CCATGG 1 cut(s) 28
BspANI GGCC 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 26
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 2 cut(s) 88, 204
BssT1I CCWWGG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 52, 146
BstDSI CCRYGG 1 cut(s) 28
BstENI CCTNNNNNAGG 1 cut(s) 255
BstKTI GATC 2 cut(s) 91, 207
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 2 cut(s) 88, 204
BstMWI GCNNNNNNNGC 2 cut(s) 60, 242
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 59, 220
BstXI CCANNNNNNTGG 1 cut(s) 193
BsuRI GGCC 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 52, 146
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 29
CviJI RGCY 6 cut(s) 54, 63, 71, 148, 185, 309
CviKI_1 RGCY 6 cut(s) 54, 63, 71, 148, 185, 309
CviQI GTAC 1 cut(s) 25
DpnI GATC 2 cut(s) 90, 206
DpnII GATC 2 cut(s) 88, 204
Eco130I CCWWGG 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 218
EcoNI CCTNNNNNAGG 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 32
FaiI YATR 4 cut(s) 18, 30, 257, 313
FalI AAGNNNNNCTT 1 cut(s) 293
FatI CATG 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 48, 234
Fsp4HI GCNGC 2 cut(s) 48, 234
GluI GCNGC 2 cut(s) 48, 234
GsaI CCCAGC 1 cut(s) 71
HaeIII GGCC 1 cut(s) 63
Hin1II CATG 1 cut(s) 32
HinfI GANTC 2 cut(s) 155, 199
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 160, 204
HpyAV CCTTC 1 cut(s) 209
HpyCH4V TGCA 4 cut(s) 76, 112, 263, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 242
Hsp92II CATG 1 cut(s) 32
KpnI GGTACC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 88, 204
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 2 cut(s) 59, 220
LweI GCATC 1 cut(s) 85
MalI GATC 2 cut(s) 90, 206
MboI GATC 2 cut(s) 88, 204
MboII GAAGA 1 cut(s) 83
MluCI AATT 2 cut(s) 82, 167
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 6 cut(s) 74, 154, 157, 218, 260, 288
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 60, 242
NcoI CCATGG 1 cut(s) 28
NdeII GATC 2 cut(s) 88, 204
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 2 cut(s) 49, 235
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SatI GCNGC 2 cut(s) 48, 234
Sau3AI GATC 2 cut(s) 88, 204
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 150
SetI ASST 9 cut(s) 26, 73, 154, 253, 262, 271, 280, 306, 311
SfaNI GCATC 1 cut(s) 85
SinI GGWCC 1 cut(s) 218
Sse9I AATT 2 cut(s) 82, 167
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 1 cut(s) 28
TasI AATT 2 cut(s) 82, 167
TfiI GAWTC 1 cut(s) 199
TscAI CASTG 1 cut(s) 121
TseI GCWGC 2 cut(s) 47, 233
TspDTI ATGAA 1 cut(s) 229
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 218
XagI CCTNNNNNAGG 1 cut(s) 255
XapI RAATTY 2 cut(s) 82, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.