Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004181

Physical Location & Seq

Genomic Coordinates Reverse (-)

4955181 .. 4964404

Gene Structure 9224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGGCGAATGGGCGATGATGCAAAAGAGTTTCGGCCTGAGAGATGGCTTGACGAAAATGGCATTTTTCGAGAAGAGAGCCCTTTCAAATTCATGGCCTTCAATGTAATTAAGAAAACTAAGCTAGTATTTGCTTTAAAAAGTTGCTTAATTATGGGAGTATTGATAACATTTTATCATGCAGGCTGGTCCAAGAATTTGTCTCGGAAAAGACAATGGTTATATCCAGATGAAAATATTTCTGCTATACTTTTAAGTAACTACATATTCAATCTCAATGACAAGAAACAAGTTGTCAAATACAAGGCGATGGCCACACTCCATATCAATAAAGGCCTTCATGCTCACTTGGGGTGGCGGGATCGGCGGTCTCTTGGTGCTGCAAACCCGGTGGCGGCTTTGCTGGGTTCCTCTGATTTTCAATCAGATCCTTTTGTTTCTGTTGGGTTCGGGTGGCTTAGGGGATGGGGTGGTACGTCTTGCCTGTGTGGGGATAATGGAAGGTTGGAGGGTCAGACTGCCCTTGCATGGCGTCAGGGGGCGGCGGTGGAGCTGTCGGCGGCAGGACGAGAGGGCTGCGTCGTGCCTTCTGCACCACGAATAGGAAACATGGGTGGCGAGTTGGAAGCAGCATATATGGTGCCATTGCCACATTTAGACAACCAGAAATTGTGCTGGTTCATCATGGAGATGCCATTTGATGGAATTCATATTCGACCAGTTCTATCAAACTTTATCTTGCTAATGGATATGACAGGTGAGTTGGAGGAGGAATTCTCAACCAGATTAGCCAATAATTTGGAGAATCTTATCCTCAAAGAAGGACCAGAGACTAGAATACTTTGTGTGCCTGACACAGTTTATTACTTTCTGATTGCTGCGTTCATTGCCGAACCTGTCATAGGTGCAGGAGGTGTGATACCTCCCCCTGCAACTTATTTTGACAAGGAAAGATGCCGAGGACTTGTGCAGGGAAAGGAGAAGACTGCTGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

332

Amino Acids

37.07

Weight (kDa)

6.62

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22200 AT3G22200
fragaria_vesca	FvH4_6g39530 FvH4_6g39560
malus_domestica	MD09G1139200.v1.1 MD17G1128700.v1.1
prunus_persica	Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1 Prupe.3G186500_v2.0.a1
pyrus_communis	pycom09g05980 pycom17g12080
rosa_chinensis	RchiOBHm_Chr1g0318031 RchiOBHm_Chr2g0136861 RchiOBHm_Chr2g0153591 RchiOBHm_Chr4g0413181 RchiOBHm_Chr7g0235481
rosa_laevigata	RLG00000020713
rosa_multiflora	Rmu_sc0002187.1_g000020 Rmu_sc0018730.1_g000001 Rmu_ssc0000024.1_g000016
rosa_roxburghii	Rroxscaffold_2G00094890 Rroxscaffold_4G00282830
rosa_rugosa	Rorug02G0440800
rosa_samantha	Rh2AG384900 Rh2AG528200 Rh2BG391800 Rh2BG514300 Rh2CG512500 Rh2DG526100 Rh4CG188400 Rh6AG130800
rosa_wichuraiana	Rw2G041360 Rw7G022490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	640
AccB7I	CCANNNNNTGG	1 cut(s)	701
AciI	CCGC	6 cut(s)	358, 367, 395, 542, 545, 560
AclWI	GGATC	2 cut(s)	369, 422
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	4 cut(s)	89, 196, 705, 773
AcyI	GRCGYC	1 cut(s)	532
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	6 cut(s)	394, 490, 528, 602, 701, 902
AgsI	TTSAA	4 cut(s)	88, 103, 271, 422
AluBI	AGCT	2 cut(s)	124, 553
AluI	AGCT	2 cut(s)	124, 553
Alw26I	GTCTC	3 cut(s)	207, 375, 824
AlwI	GGATC	2 cut(s)	369, 422
AoxI	GGCC	4 cut(s)	35, 96, 312, 334
ApeKI	GCWGC	4 cut(s)	380, 576, 629, 878
ApoI	RAATTY	4 cut(s)	89, 196, 705, 773
AspS9I	GGNCC	2 cut(s)	189, 824
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	770
AvaII	GGWCC	2 cut(s)	189, 824
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	989
BbvI	GCAGC	4 cut(s)	367, 563, 641, 865
BccI	CCATC	4 cut(s)	39, 304, 459, 695
BcgI	CGANNNNNNTGC	2 cut(s)	558, 592
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	3 cut(s)	207, 375, 824
BfaI	CTAG	2 cut(s)	125, 834
BisI	GCNGC	7 cut(s)	381, 396, 543, 561, 577, 630, 879
BlsI	GCNGC	7 cut(s)	382, 397, 544, 562, 578, 631, 880
Bme1390I	CCNGG	1 cut(s)	389
Bme18I	GGWCC	2 cut(s)	189, 824
BmgT120I	GGNCC	2 cut(s)	189, 824
BmiI	GGNNCC	2 cut(s)	409, 642
BmrFI	CCNGG	1 cut(s)	389
BmsI	GCATC	3 cut(s)	10, 681, 944
BpiI	GAAGAC	1 cut(s)	989
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
Bpu10I	CCTNAGC	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	532
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	958
Bsc4I	CCNNNNNNNGG	6 cut(s)	394, 490, 528, 602, 701, 902
Bse1I	ACTGG	1 cut(s)	719
Bse3DI	GCAATG	2 cut(s)	644, 885
BseDI	CCNNGG	1 cut(s)	958
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	6 cut(s)	394, 490, 528, 602, 701, 902
BseMI	GCAATG	2 cut(s)	644, 885
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	1 cut(s)	782
BseXI	GCAGC	4 cut(s)	367, 563, 641, 865
BseYI	CCCAGC	1 cut(s)	403
BsgI	GTGCAG	3 cut(s)	576, 927, 989
BshFI	GGCC	4 cut(s)	37, 98, 314, 336
BshNI	GGYRCC	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	6 cut(s)	394, 490, 528, 602, 701, 902
BsmAI	GTCTC	3 cut(s)	207, 375, 824
BsnI	GGCC	4 cut(s)	37, 98, 314, 336
Bso31I	GGTCTC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	361, 427
BspACI	CCGC	6 cut(s)	358, 367, 395, 542, 545, 560
BspANI	GGCC	4 cut(s)	37, 98, 314, 336
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	409, 642
BspPI	GGATC	2 cut(s)	369, 422
BspT107I	GGYRCC	1 cut(s)	640
BspTNI	GGTCTC	1 cut(s)	375
BsrDI	GCAATG	2 cut(s)	644, 885
BsrI	ACTGG	1 cut(s)	719
BssECI	CCNNGG	1 cut(s)	958
BssMI	GATC	2 cut(s)	361, 427
BssNI	GRCGYC	1 cut(s)	532
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	1 cut(s)	69
BstACI	GRCGYC	1 cut(s)	532
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	39, 120, 458
BstENI	CCTNNNNNAGG	1 cut(s)	900
BstF5I	GGATG	1 cut(s)	470
BstKTI	GATC	2 cut(s)	364, 430
BstMAI	GTCTC	3 cut(s)	207, 375, 824
BstMBI	GATC	2 cut(s)	361, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 887
BstSCI	CCNGG	1 cut(s)	387
BstV1I	GCAGC	4 cut(s)	367, 563, 641, 865
BstV2I	GAAGAC	1 cut(s)	989
BstX2I	RGATCY	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	4 cut(s)	37, 98, 314, 336
BtgZI	GCGATG	2 cut(s)	30, 323
BtsCI	GGATG	1 cut(s)	470
Cac8I	GCNNGC	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	189, 824
CseI	GACGC	2 cut(s)	521, 568
Csp6I	GTAC	1 cut(s)	474
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	6 cut(s)	94, 179, 341, 528, 610, 685
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	3 cut(s)	39, 120, 458
DpnI	GATC	2 cut(s)	363, 429
DpnII	GATC	2 cut(s)	361, 427
DraI	TTTAAA	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	2 cut(s)	189, 824
EcoNI	CCTNNNNNAGG	1 cut(s)	900
EcoRI	GAATTC	2 cut(s)	705, 773
EcoT38I	GRGCYC	1 cut(s)	83
FaeI	CATG	6 cut(s)	97, 182, 344, 531, 613, 688
FatI	CATG	6 cut(s)	93, 178, 340, 527, 609, 684
FauI	CCCGC	1 cut(s)	351
Fnu4HI	GCNGC	7 cut(s)	381, 396, 543, 561, 577, 630, 879
FokI	GGATG	1 cut(s)	477
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	7 cut(s)	381, 396, 543, 561, 577, 630, 879
FspBI	CTAG	2 cut(s)	125, 834
GluI	GCNGC	7 cut(s)	381, 396, 543, 561, 577, 630, 879
GsaI	CCCAGC	1 cut(s)	407
HaeIII	GGCC	4 cut(s)	37, 98, 314, 336
HapII	CCGG	1 cut(s)	389
HgaI	GACGC	2 cut(s)	521, 568
Hin1I	GRCGYC	1 cut(s)	532
Hin1II	CATG	6 cut(s)	97, 182, 344, 531, 613, 688
HinfI	GANTC	1 cut(s)	805
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	770
Hpy188I	TCNGA	5 cut(s)	207, 415, 427, 516, 873
Hpy188III	TCNNGA	2 cut(s)	71, 227
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	5 cut(s)	109, 347, 495, 597, 815
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	8 cut(s)	23, 182, 383, 527, 593, 908, 932, 970
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 887
HpyF3I	CTNAG	3 cut(s)	39, 120, 458
HpySE526I	ACGT	1 cut(s)	476
Hsp92I	GRCGYC	1 cut(s)	532
Hsp92II	CATG	6 cut(s)	97, 182, 344, 531, 613, 688
Kzo9I	GATC	2 cut(s)	361, 427
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	4 cut(s)	367, 563, 641, 865
LweI	GCATC	3 cut(s)	10, 681, 944
MaeI	CTAG	2 cut(s)	125, 834
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	2 cut(s)	363, 429
MboI	GATC	2 cut(s)	361, 427
MboII	GAAGA	2 cut(s)	86, 994
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	8 cut(s)	89, 108, 150, 196, 668, 705, 773, 796
MluNI	TGGCCA	1 cut(s)	314
MmeI	TCCRAC	3 cut(s)	486, 603, 744
MnlI	CCTC	9 cut(s)	421, 502, 565, 760, 763, 824, 905, 933, 953
Mox20I	TGGCCA	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	5 cut(s)	111, 137, 149, 254, 997
MslI	CAYNNNNRTG	1 cut(s)	689
Msp20I	TGGCCA	1 cut(s)	314
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	364, 887
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	2 cut(s)	361, 427
NlaIII	CATG	6 cut(s)	97, 182, 344, 531, 613, 688
NlaIV	GGNNCC	2 cut(s)	409, 642
NmeAIII	GCCGAG	1 cut(s)	983
PceI	AGGCCT	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	805
PflMI	CCANNNNNTGG	1 cut(s)	701
PkrI	GCNGC	7 cut(s)	382, 397, 544, 562, 578, 631, 880
PspFI	CCCAGC	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	409, 642
PspPI	GGNCC	2 cut(s)	189, 824
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	689
SaqAI	TTAA	5 cut(s)	111, 137, 149, 254, 997
SatI	GCNGC	7 cut(s)	381, 396, 543, 561, 577, 630, 879
Sau3AI	GATC	2 cut(s)	361, 427
Sau96I	GGNCC	2 cut(s)	189, 824
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	9 cut(s)	126, 479, 506, 555, 760, 898, 907, 916, 925
SfaNI	GCATC	3 cut(s)	10, 681, 944
SinI	GGWCC	2 cut(s)	189, 824
SmiMI	CAYNNNNRTG	1 cut(s)	689
Sse9I	AATT	8 cut(s)	89, 108, 150, 196, 668, 705, 773, 796
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	6 cut(s)	358, 367, 395, 542, 545, 560
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	2 cut(s)	125, 834
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	2 cut(s)	70, 715
TasI	AATT	8 cut(s)	89, 108, 150, 196, 668, 705, 773, 796
TauI	GCSGC	3 cut(s)	398, 545, 563
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	5 cut(s)	111, 137, 149, 254, 997
Tru9I	TTAA	5 cut(s)	111, 137, 149, 254, 997
TseI	GCWGC	4 cut(s)	380, 576, 629, 878
TspDTI	ATGAA	6 cut(s)	82, 246, 329, 670, 698, 874
Van91I	CCANNNNNTGG	1 cut(s)	701
VpaK11BI	GGWCC	2 cut(s)	189, 824
XagI	CCTNNNNNAGG	1 cut(s)	900
XapI	RAATTY	4 cut(s)	89, 196, 705, 773
XspI	CTAG	2 cut(s)	125, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.