FvH4_6g44800

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
34487644 .. 34490687
3044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44800.t1

Sequence Viewer

Length: 1596 bp
ATGAGGCGGAGGGCGGCGGACTTCCGGCGGCCGTTGAGGGCGAGGAGGTTTCCGAATGCGTTCTGGTGGGTTCTGTGTGGGGTTGCAGTGTTGCTGTTTATCTATACTTTGAGCAGAGGCAGTCAGATTGAATCCAGACCTGTATTAACCACTAGATATAGGCATGATAGAGTCATGGAAGGTCTGAACATTACTGAAGAAATGTTGAGCCCCAACTCAGTTGCCAGGCAGATCAGTGACCAAATAGCTCTGGCAAAGGCTTTCGTTGTGATTGCCAAAGAGAGCAACAACCTTCAGTTTGCATGGGAGTTAAGTGCCCAGATCCGCAACTCACAGATTCTGTTGTCAAATGCTGCGACGAGGAGACCTTTGACGGCAAGAGAATCAGAAACTGCAATTCGTGATATGGCACTTGTACTGTACCAAGCGCAACAGCTCCATTACGATAGTGCAACCATGATTATGAGACTGAAAGCCAAAATACAATCTCTGGAAGAACAGATGAGTTCTGTGAGTGAGAAAAGTTCCAAGTACGGACAAATAGCTGCTGAGGAGGTCCCTAAAAGCCTTTACTGCCTTGGTATTCAGCTGACAAGTGAATGGTTCAGGCACCCAAATCTGCAGAGGAAACTCAAGGACAGAAAAATAGAAATGAAAGTAAAGGATAACAATCTCTATCATTTCTGTGTATTCTCTGACAACATTTTGGCAACTTCAGTTGTGGTCAATTCAACAGCTCTAAGTTCCAACGATCCAGAGAAGGTCGTCTTCCATCTTGTAACCGATGAAATCAACCATGCTGCAATGAAGGCCTGGTTCTCTATGAACAGCTTCAGAGGAGTGACTGTCGAGGTTCAGAAGTTTGAGGACTTTAAATGGCTGAATGCTTCTTATGTTCCTGTGCTTAAGCAGCTCCAAGACTCTGAAACTCAAAGTTACTATTTCTCTGGAAACAGTGATGATAGCCGGACACCAATCAAGTTTCGGAACCCAAAGTATCTTTCCATGCTTAACCATCTGCGCTTCTATATTCCTGAAGTTTTTCCTTCCCTGAAGAAGGTGGTATTCCTTGATGATGATGTTGTTGTCCAGAAGGATCTGTCTGGCCTGTTCTCGATCGATTTGAATGGCAATGTAAATGGAGCAGTGGAGACATGCATGGAGACGTTTCACAGATACCATAAATATCTGAACTACTCTCACCCTCTCATTCGATCACATTTTGATCCCGATGCCTGTGGATGGGCATTTGGAATGAATGTGTTTGATTTGGTTCAGTGGAGGAAAAGGAACGTTACTGGCATCTACCACTACTGGCAGGAAAGAAATGTTGATCGAACATTGTGGAAACTTGGCACATTGCCACCTGGATTGTTGACATTCTATGGACTGACCGAGCCTTTGGAGCCGTCATGGCATGTTTTGGGCTTGGGGTACACAAATGTTGATCCTCATTTGATAGAGAAGGGTGCTGTGCTGCATTACAACGGAAACTCAAAACCGTGGTTGAAGATTGGGATGGAAAAGTATAAGCCCCTTTGGGAGAAATTTATTGATTATACTCATCCTTTGTTGCAACGGTGCAATTTCCATTGA

Protein Analysis

532

Amino Acids

61.67

Weight (kDa)

9.14

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 72 - 148 4.2e-10 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 233 - 505 3.8e-70 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 609
AciI CCGC 5 cut(s) 7, 14, 17, 28, 325
AclI AACGTT 1 cut(s) 1293
AclWI GGATC 5 cut(s) 316, 746, 1104, 1220, 1442
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 1 cut(s) 1547
AcuI CTGAAG 6 cut(s) 216, 278, 699, 817, 1056, 1073
AfaI GTAC 4 cut(s) 417, 422, 533, 1436
AfiI CCNNNNNNNGG 2 cut(s) 1057, 1242
AflII CTTAAG 1 cut(s) 905
AgsI TTSAA 4 cut(s) 131, 732, 1126, 1510
AjnI CCWGG 3 cut(s) 224, 812, 1366
AjuI GAANNNNNNNTTGG 2 cut(s) 985, 1017
AluBI AGCT 7 cut(s) 248, 436, 545, 589, 737, 831, 913
AluI AGCT 7 cut(s) 248, 436, 545, 589, 737, 831, 913
Alw26I GTCTC 4 cut(s) 358, 460, 1145, 1157
AlwI GGATC 5 cut(s) 316, 746, 1104, 1220, 1442
AlwNI CAGNNNCTG 2 cut(s) 340, 392
AoxI GGCC 3 cut(s) 29, 810, 1105
ApeKI GCWGC 5 cut(s) 353, 545, 800, 910, 1477
ApoI RAATTY 1 cut(s) 1547
ArsI GACNNNNNNTTYG 2 cut(s) 1384, 1416
Asp700I GAANNNNTTC 3 cut(s) 59, 830, 1041
AspLEI GCGC 2 cut(s) 430, 1023
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 1 cut(s) 1193
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 609
BanII GRGCYC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 760
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 5 cut(s) 340, 532, 787, 922, 1464
BccI CCATC 4 cut(s) 780, 1023, 1236, 1513
BceAI ACGGC 3 cut(s) 16, 390, 1393
BciT130I CCWGG 3 cut(s) 226, 814, 1368
BcoDI GTCTC 4 cut(s) 358, 460, 1145, 1157
BfaI CTAG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 620
BfrI CTTAAG 1 cut(s) 905
BglI GCCNNNNNGGC 1 cut(s) 1414
BisI GCNGC 7 cut(s) 15, 29, 354, 546, 801, 911, 1478
BlsI GCNGC 7 cut(s) 16, 30, 355, 547, 802, 912, 1479
Bme1390I CCNGG 3 cut(s) 226, 814, 1368
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 4 cut(s) 558, 611, 989, 1407
BmrFI CCNGG 3 cut(s) 226, 814, 1368
BmsI GCATC 2 cut(s) 1222, 1311
BpiI GAAGAC 1 cut(s) 760
Bpu10I CCTNAGC 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 617
Bsa29I ATCGAT 1 cut(s) 1119
BsaBI GATNNNNATC 1 cut(s) 669
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 577, 1502
BsaXI ACNNNNNCTCC 2 cut(s) 831, 861
Bsc4I CCNNNNNNNGG 2 cut(s) 1057, 1242
Bse1I ACTGG 2 cut(s) 1303, 1319
Bse3DI GCAATG 3 cut(s) 810, 1138, 1358
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 3 cut(s) 226, 814, 1368
BseCI ATCGAT 1 cut(s) 1119
BseDI CCNNGG 2 cut(s) 577, 1502
BseGI GGATG 3 cut(s) 1247, 1524, 1564
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 2 cut(s) 1057, 1242
BseMI GCAATG 3 cut(s) 810, 1138, 1358
BseMII CTCAG 2 cut(s) 231, 540
BseNI ACTGG 2 cut(s) 1303, 1319
BseRI GAGGAG 4 cut(s) 58, 376, 566, 852
BseSI GKGCMC 1 cut(s) 319
BseX3I CGGCCG 1 cut(s) 29
BseXI GCAGC 5 cut(s) 340, 532, 787, 922, 1464
Bsh1285I CGRYCG 2 cut(s) 32, 1119
BshFI GGCC 3 cut(s) 31, 812, 1107
BshNI GGYRCC 1 cut(s) 609
BshVI ATCGAT 1 cut(s) 1119
BsiEI CGRYCG 2 cut(s) 32, 1119
BsiSI CCGG 2 cut(s) 25, 967
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 1057, 1242
BsmAI GTCTC 4 cut(s) 358, 460, 1145, 1157
BsmBI CGTCTC 1 cut(s) 1157
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 2 cut(s) 61, 889
BsnI GGCC 3 cut(s) 31, 812, 1107
Bso31I GGTCTC 1 cut(s) 358
Bsp1286I GDGCHC 2 cut(s) 212, 319
Bsp143I GATC 9 cut(s) 231, 321, 751, 1096, 1116, 1214, 1225, 1333, 1447
BspACI CCGC 5 cut(s) 7, 14, 17, 28, 325
BspANI GGCC 3 cut(s) 31, 812, 1107
BspCNI CTCAG 2 cut(s) 230, 541
BspDI ATCGAT 1 cut(s) 1119
BspLI GGNNCC 4 cut(s) 558, 611, 989, 1407
BspMAI CTGCAG 1 cut(s) 624
BspPI GGATC 5 cut(s) 316, 746, 1104, 1220, 1442
BspT107I GGYRCC 1 cut(s) 609
BspTI CTTAAG 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 358
BsrDI GCAATG 3 cut(s) 810, 1138, 1358
BsrI ACTGG 2 cut(s) 1303, 1319
BssECI CCNNGG 2 cut(s) 577, 1502
BssMI GATC 9 cut(s) 231, 321, 751, 1096, 1116, 1214, 1225, 1333, 1447
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 3 cut(s) 226, 814, 1368
Bst4CI ACNGT 5 cut(s) 420, 847, 956, 1503, 1581
BstAFI CTTAAG 1 cut(s) 905
BstDEI CTNAG 3 cut(s) 217, 549, 740
BstDSI CCRYGG 1 cut(s) 1502
BstENI CCTNNNNNAGG 1 cut(s) 1055
BstF5I GGATG 3 cut(s) 1247, 1524, 1564
BstHHI GCGC 2 cut(s) 430, 1023
BstKTI GATC 9 cut(s) 234, 324, 754, 1099, 1119, 1217, 1228, 1336, 1450
BstMAI GTCTC 4 cut(s) 358, 460, 1145, 1157
BstMBI GATC 9 cut(s) 231, 321, 751, 1096, 1116, 1214, 1225, 1333, 1447
BstMCI CGRYCG 2 cut(s) 32, 1119
BstMWI GCNNNNNNNGC 5 cut(s) 573, 809, 910, 1405, 1414
BstNI CCWGG 3 cut(s) 226, 814, 1368
BstNSI RCATGY 2 cut(s) 1158, 1421
BstSCI CCNGG 3 cut(s) 224, 812, 1366
BstSFI CTRYAG 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 5 cut(s) 340, 532, 787, 922, 1464
BstV2I GAAGAC 1 cut(s) 760
BstX2I RGATCY 2 cut(s) 321, 1096
BstYI RGATCY 2 cut(s) 321, 1096
BstZI CGGCCG 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 1119
BsuRI GGCC 3 cut(s) 31, 812, 1107
BsuTUI ATCGAT 1 cut(s) 1119
BtgI CCRYGG 1 cut(s) 1502
BtsCI GGATG 3 cut(s) 1247, 1524, 1564
BtsI GCAGTG 2 cut(s) 93, 1152
BtsIMutI CAGTG 5 cut(s) 93, 241, 961, 1152, 1283
CaiI CAGNNNCTG 2 cut(s) 340, 392
CfoI GCGC 2 cut(s) 430, 1023
Cfr13I GGNCC 1 cut(s) 556
ClaI ATCGAT 1 cut(s) 1119
Csp6I GTAC 4 cut(s) 416, 421, 532, 1435
CspCI CAANNNNNGTGG 2 cut(s) 1353, 1388
CviQI GTAC 4 cut(s) 416, 421, 532, 1435
DdeI CTNAG 3 cut(s) 217, 549, 740
DpnI GATC 9 cut(s) 233, 323, 753, 1098, 1118, 1216, 1227, 1335, 1449
DpnII GATC 9 cut(s) 231, 321, 751, 1096, 1116, 1214, 1225, 1333, 1447
DraI TTTAAA 1 cut(s) 874
EaeI YGGCCR 1 cut(s) 29
EagI CGGCCG 1 cut(s) 29
EciI GGCGGA 2 cut(s) 22, 32
EclXI CGGCCG 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 577
Eco147I AGGCCT 1 cut(s) 812
Eco24I GRGCYC 1 cut(s) 212
Eco31I GGTCTC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 556
Eco52I CGGCCG 1 cut(s) 29
Eco57I CTGAAG 6 cut(s) 216, 278, 699, 817, 1056, 1073
EcoNI CCTNNNNNAGG 1 cut(s) 1055
EcoO109I RGGNCCY 1 cut(s) 556
EcoRII CCWGG 3 cut(s) 224, 812, 1366
EcoT14I CCWWGG 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 1160
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 577
Esp3I CGTCTC 1 cut(s) 1157
FalI AAGNNNNNCTT 2 cut(s) 752, 784
FaqI GGGAC 1 cut(s) 542
Fnu4HI GCNGC 7 cut(s) 15, 29, 354, 546, 801, 911, 1478
FokI GGATG 3 cut(s) 1254, 1531, 1551
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 7 cut(s) 15, 29, 354, 546, 801, 911, 1478
FspBI CTAG 1 cut(s) 153
GlaI GCGC 2 cut(s) 429, 1022
GluI GCNGC 7 cut(s) 15, 29, 354, 546, 801, 911, 1478
HaeIII GGCC 3 cut(s) 31, 812, 1107
HapII CCGG 2 cut(s) 25, 967
HhaI GCGC 2 cut(s) 430, 1023
Hin6I GCGC 2 cut(s) 428, 1021
HinP1I GCGC 2 cut(s) 428, 1021
HincII GTYRAC 1 cut(s) 1377
HindII GTYRAC 1 cut(s) 1377
HinfI GANTC 5 cut(s) 131, 171, 337, 383, 920
HpaII CCGG 2 cut(s) 25, 967
HphI GGTGA 1 cut(s) 1193
Hpy166II GTNNAC 2 cut(s) 1377, 1437
Hpy188III TCNNGA 9 cut(s) 135, 401, 491, 755, 948, 1034, 1090, 1114, 1229
Hpy8I GTNNAC 2 cut(s) 1377, 1437
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 8 cut(s) 173, 302, 754, 802, 1051, 1056, 1087, 1459
HpyCH4III ACNGT 5 cut(s) 420, 847, 956, 1503, 1581
HpyCH4IV ACGT 2 cut(s) 1166, 1293
HpyF10VI GCNNNNNNNGC 5 cut(s) 573, 809, 910, 1405, 1414
HpyF3I CTNAG 3 cut(s) 217, 549, 740
HpySE526I ACGT 2 cut(s) 1166, 1293
HspAI GCGC 2 cut(s) 428, 1021
Kzo9I GATC 9 cut(s) 231, 321, 751, 1096, 1116, 1214, 1225, 1333, 1447
LmnI GCTCC 4 cut(s) 441, 918, 1142, 1405
Lsp1109I GCAGC 5 cut(s) 340, 532, 787, 922, 1464
LweI GCATC 2 cut(s) 1222, 1311
MaeI CTAG 1 cut(s) 153
MaeII ACGT 2 cut(s) 1166, 1293
MaeIII GTNAC 5 cut(s) 236, 778, 841, 935, 1294
MalI GATC 9 cut(s) 233, 323, 753, 1098, 1118, 1216, 1227, 1335, 1449
MboI GATC 9 cut(s) 231, 321, 751, 1096, 1116, 1214, 1225, 1333, 1447
MboII GAAGA 5 cut(s) 209, 506, 760, 1066, 1522
MflI RGATCY 2 cut(s) 321, 1096
MhlI GDGCHC 2 cut(s) 212, 319
MluCI AATT 4 cut(s) 396, 727, 1547, 1585
MlyI GAGTC 2 cut(s) 180, 914
MmeI TCCRAC 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 1160
MroXI GAANNNNTTC 3 cut(s) 59, 830, 1041
MseI TTAA 5 cut(s) 146, 311, 873, 906, 1011
MslI CAYNNNNRTG 2 cut(s) 461, 684
MspA1I CMGCKG 1 cut(s) 589
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 2 cut(s) 25, 967
MspR9I CCNGG 3 cut(s) 226, 814, 1368
Mva1269I GAATGC 2 cut(s) 61, 889
MvaI CCWGG 3 cut(s) 226, 814, 1368
MwoI GCNNNNNNNGC 5 cut(s) 573, 809, 910, 1405, 1414
NdeII GATC 9 cut(s) 231, 321, 751, 1096, 1116, 1214, 1225, 1333, 1447
NlaIV GGNNCC 4 cut(s) 558, 611, 989, 1407
NmuCI GTSAC 2 cut(s) 236, 841
NsiI ATGCAT 1 cut(s) 1160
NspI RCATGY 2 cut(s) 1158, 1421
PceI AGGCCT 1 cut(s) 812
PctI GAATGC 2 cut(s) 61, 889
PdmI GAANNNNTTC 3 cut(s) 59, 830, 1041
PfeI GAWTC 3 cut(s) 131, 337, 383
PkrI GCNGC 7 cut(s) 16, 30, 355, 547, 802, 912, 1479
Ple19I CGATCG 1 cut(s) 1119
PleI GAGTC 2 cut(s) 179, 914
PpsI GAGTC 2 cut(s) 179, 914
PpuMI RGGWCCY 1 cut(s) 556
Psp1406I AACGTT 1 cut(s) 1293
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 3 cut(s) 224, 812, 1366
PspGI CCWGG 3 cut(s) 224, 812, 1366
PspN4I GGNNCC 4 cut(s) 558, 611, 989, 1407
PspPI GGNCC 1 cut(s) 556
PspPPI RGGWCCY 1 cut(s) 556
PstI CTGCAG 1 cut(s) 624
PstNI CAGNNNCTG 2 cut(s) 340, 392
PsuI RGATCY 2 cut(s) 321, 1096
PvuI CGATCG 1 cut(s) 1119
PvuII CAGCTG 1 cut(s) 589
RsaI GTAC 4 cut(s) 417, 422, 533, 1436
RsaNI GTAC 4 cut(s) 416, 421, 532, 1435
RseI CAYNNNNRTG 2 cut(s) 461, 684
SaqAI TTAA 5 cut(s) 146, 311, 873, 906, 1011
SatI GCNGC 7 cut(s) 15, 29, 354, 546, 801, 911, 1478
Sau3AI GATC 9 cut(s) 231, 321, 751, 1096, 1116, 1214, 1225, 1333, 1447
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 2 cut(s) 180, 914
ScrFI CCNGG 3 cut(s) 226, 814, 1368
SduI GDGCHC 2 cut(s) 212, 319
SfaNI GCATC 2 cut(s) 1222, 1311
SfcI CTRYAG 1 cut(s) 620
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 2 cut(s) 461, 684
SmlI CTYRAG 2 cut(s) 632, 905
SmoI CTYRAG 2 cut(s) 632, 905
Sse9I AATT 4 cut(s) 396, 727, 1547, 1585
SseBI AGGCCT 1 cut(s) 812
SsiI CCGC 5 cut(s) 7, 14, 17, 28, 325
SspMI CTAG 1 cut(s) 153
StuI AGGCCT 1 cut(s) 812
StyD4I CCNGG 3 cut(s) 224, 812, 1366
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 5 cut(s) 420, 847, 956, 1503, 1581
TaiI ACGT 2 cut(s) 1169, 1296
TaqI TCGA 5 cut(s) 849, 1115, 1119, 1213, 1336
TaqII GACCGA 1 cut(s) 1409
TasI AATT 4 cut(s) 396, 727, 1547, 1585
TatI WGTACW 1 cut(s) 415
TauI GCSGC 2 cut(s) 17, 31
TfiI GAWTC 3 cut(s) 131, 337, 383
Tru1I TTAA 5 cut(s) 146, 311, 873, 906, 1011
Tru9I TTAA 5 cut(s) 146, 311, 873, 906, 1011
TscAI CASTG 5 cut(s) 93, 241, 961, 1152, 1283
TseFI GTSAC 2 cut(s) 236, 841
TseI GCWGC 5 cut(s) 353, 545, 800, 910, 1477
Tsp45I GTSAC 2 cut(s) 236, 841
TspDTI ATGAA 5 cut(s) 668, 801, 821, 839, 1271
TspGWI ACGGA 2 cut(s) 549, 1503
TspRI CASTG 5 cut(s) 93, 241, 961, 1152, 1283
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 1 cut(s) 556
XagI CCTNNNNNAGG 1 cut(s) 1055
XapI RAATTY 1 cut(s) 1547
XceI RCATGY 2 cut(s) 1158, 1421
XmnI GAANNNNTTC 3 cut(s) 59, 830, 1041
XspI CTAG 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.