Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006688

Physical Location & Seq

Genomic Coordinates Forward (+)

61410951 .. 61425814

Gene Structure 14864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCCGGCTGTTGTTACGGATAGACTATTCAATGAAGAGGCCAAGGATGTTAAGGTTCACGACCGAGTGGATGCGGAAATCCCCAAGGAAGGAAAGCCAATGAGGTTAAGGAAGGCCGAGGATGTTAAGGTTCACGACCGGGGTGGATATGGAAATCCCCTAGGAAGGAATGTCAATGAGGTTAAGGACCATAGTGGATATGGAATTCCCTCGGGAAGGAAGACCAAGGATGTTAAGGTTCCCGACCTAAGTGGATCCGGAAATCCCCTAGGAAGGAAAGCCAATGAGGACCATAGTGGATATGGAATTCCCTCGGGAAGGAAGACCAAGGATGTTAAGGTTCCCGACCTAAGTGGATCTGGAAATCCCCTAGGAAGGAAAGCCAATGAGAGGATGAACCCACCAAGAACTGCAGGTCGTGACGTGCAGCTGCACAATGGTCTCGAGGGTAATTTAGCTGAGAATCGTCAATTGAAGCTTCCATTAGCTGATGCGCTTTCAGCAGGGGAACGGTTTAAGGATCTTATTGCTGCTTTGGTGATCCATCATTGGTTCCAAATTTTGGATTTCGATCACAACTCGATTGTCGCCTACATCCGCAAGTGCATGAACACCGGGCAGACGACGGTTGCTGTTTCTATTGTGGCTGCCAGAGATCGATGTCAATTTGCCCATCCAAAGGATCCTAATCCGGCGGATTTTGCTCTAGTTTTGGGGACCATCCAACCATCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

26.79

Weight (kDa)

9.15

Isoelectric Point (pI)

13.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20810
fragaria_vesca	FvH4_6g44800
malus_domestica	MD09G1093100.v1.1 MD17G1083200.v1.1
prunus_persica	Prupe.3G232100_v2.0.a1
pyrus_communis	pycom09g01830 pycom17g08100
rosa_chinensis	RchiOBHm_Chr2g0161971 RchiOBHm_Chr6g0254251
rosa_laevigata	RLG00000014931 RLG00000021312
rosa_multiflora	Rmu_sc0003711.1_g000023 Rmu_sc0008428.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088430 Rroxscaffold_7G00211000 Rroxscaffold_7G00211020
rosa_rugosa	Rorug02G0493700
rosa_samantha	Rh2AG559600 Rh2BG573000 Rh2CG543100 Rh2DG582800 Rh6AG067500 Rh6BG060600 Rh6DG057600
rosa_wichuraiana	Rw2G046310 Rw6G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	3 cut(s)	74, 598, 695
AclWI	GGATC	7 cut(s)	249, 262, 364, 528, 535, 677, 690
AcsI	RAATTY	3 cut(s)	204, 306, 558
AfiI	CCNNNNNNNGG	9 cut(s)	89, 165, 216, 273, 318, 375, 390, 562, 679
AgsI	TTSAA	2 cut(s)	31, 475
AjiI	CACGTC	1 cut(s)	424
AluBI	AGCT	4 cut(s)	430, 458, 478, 488
AluI	AGCT	4 cut(s)	430, 458, 478, 488
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	7 cut(s)	249, 262, 364, 528, 535, 677, 690
Ama87I	CYCGRG	3 cut(s)	211, 313, 443
Aor13HI	TCCGGA	1 cut(s)	257
AoxI	GGCC	2 cut(s)	39, 114
ApeKI	GCWGC	4 cut(s)	427, 430, 530, 647
ApoI	RAATTY	3 cut(s)	204, 306, 558
AspA2I	CCTAGG	3 cut(s)	160, 268, 370
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	187, 289, 717
AsuC2I	CCSGG	2 cut(s)	140, 616
AsuHPI	GGTGA	1 cut(s)	550
AvaI	CYCGRG	3 cut(s)	211, 313, 443
AvaII	GGWCC	3 cut(s)	187, 289, 717
AvrII	CCTAGG	3 cut(s)	160, 268, 370
BamHI	GGATCC	2 cut(s)	254, 682
BbsI	GAAGAC	2 cut(s)	227, 329
BbvI	GCAGC	4 cut(s)	417, 439, 517, 634
BccI	CCATC	4 cut(s)	552, 681, 728, 736
BcnI	CCSGG	2 cut(s)	140, 616
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	4 cut(s)	161, 269, 371, 707
BfmI	CTRYAG	1 cut(s)	411
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	4 cut(s)	428, 431, 531, 648
BlnI	CCTAGG	3 cut(s)	160, 268, 370
BlsI	GCNGC	4 cut(s)	429, 432, 532, 649
Bme1390I	CCNGG	2 cut(s)	140, 616
Bme18I	GGWCC	3 cut(s)	187, 289, 717
BmeT110I	CYCGRG	3 cut(s)	211, 313, 443
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	3 cut(s)	187, 289, 717
BmiI	GGNNCC	6 cut(s)	240, 256, 342, 554, 684, 718
BmrFI	CCNGG	2 cut(s)	140, 616
BmsI	GCATC	2 cut(s)	61, 481
BpiI	GAAGAC	2 cut(s)	227, 329
BpuMI	CCSGG	2 cut(s)	140, 616
Bsa29I	ATCGAT	1 cut(s)	658
BsaBI	GATNNNNATC	2 cut(s)	570, 687
BsaI	GGTCTC	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	9 cut(s)	89, 165, 216, 273, 318, 375, 390, 562, 679
Bse118I	RCCGGY	1 cut(s)	4
Bse8I	GATNNNNATC	2 cut(s)	570, 687
BseAI	TCCGGA	1 cut(s)	257
BseCI	ATCGAT	1 cut(s)	658
BseGI	GGATG	9 cut(s)	52, 76, 127, 235, 337, 399, 594, 673, 720
BseJI	GATNNNNATC	2 cut(s)	570, 687
BseLI	CCNNNNNNNGG	9 cut(s)	89, 165, 216, 273, 318, 375, 390, 562, 679
BseMII	CTCAG	2 cut(s)	450, 723
BseXI	GCAGC	4 cut(s)	417, 439, 517, 634
BsgI	GTGCAG	2 cut(s)	416, 446
Bsh1285I	CGRYCG	2 cut(s)	64, 139
BshFI	GGCC	2 cut(s)	41, 116
BshVI	ATCGAT	1 cut(s)	658
BsiEI	CGRYCG	2 cut(s)	64, 139
BsiHKCI	CYCGRG	3 cut(s)	211, 313, 443
BsiSI	CCGG	5 cut(s)	5, 139, 258, 615, 692
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	9 cut(s)	89, 165, 216, 273, 318, 375, 390, 562, 679
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	1 cut(s)	730
BsnI	GGCC	2 cut(s)	41, 116
Bso31I	GGTCTC	1 cut(s)	446
BsoBI	CYCGRG	3 cut(s)	211, 313, 443
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	7 cut(s)	254, 356, 520, 540, 571, 655, 682
BspACI	CCGC	3 cut(s)	74, 598, 695
BspANI	GGCC	2 cut(s)	41, 116
BspCNI	CTCAG	2 cut(s)	451, 724
BspDI	ATCGAT	1 cut(s)	658
BspEI	TCCGGA	1 cut(s)	257
BspLI	GGNNCC	6 cut(s)	240, 256, 342, 554, 684, 718
BspMAI	CTGCAG	1 cut(s)	415
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	7 cut(s)	249, 262, 364, 528, 535, 677, 690
BspTNI	GGTCTC	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	7 cut(s)	254, 356, 520, 540, 571, 655, 682
BssT1I	CCWWGG	7 cut(s)	42, 84, 160, 225, 268, 327, 370
Bst4CI	ACNGT	2 cut(s)	513, 628
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	248, 350, 459, 732
BstENI	CCTNNNNNAGG	2 cut(s)	214, 316
BstF5I	GGATG	9 cut(s)	52, 76, 127, 235, 337, 399, 594, 673, 720
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	7 cut(s)	257, 359, 523, 543, 574, 658, 685
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	7 cut(s)	254, 356, 520, 540, 571, 655, 682
BstMCI	CGRYCG	2 cut(s)	64, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 701
BstSCI	CCNGG	2 cut(s)	138, 614
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	4 cut(s)	417, 439, 517, 634
BstV2I	GAAGAC	2 cut(s)	227, 329
BstX2I	RGATCY	4 cut(s)	254, 356, 520, 682
BstYI	RGATCY	4 cut(s)	254, 356, 520, 682
Bsu15I	ATCGAT	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	41, 116
BsuTUI	ATCGAT	1 cut(s)	658
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	9 cut(s)	52, 76, 127, 235, 337, 399, 594, 673, 720
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	3 cut(s)	187, 289, 717
ClaI	ATCGAT	1 cut(s)	658
CviAII	CATG	1 cut(s)	607
DdeI	CTNAG	4 cut(s)	248, 350, 459, 732
DpnI	GATC	7 cut(s)	256, 358, 522, 542, 573, 657, 684
DpnII	GATC	7 cut(s)	254, 356, 520, 540, 571, 655, 682
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	710
Eco130I	CCWWGG	7 cut(s)	42, 84, 160, 225, 268, 327, 370
Eco31I	GGTCTC	1 cut(s)	446
Eco47I	GGWCC	3 cut(s)	187, 289, 717
Eco88I	CYCGRG	3 cut(s)	211, 313, 443
EcoNI	CCTNNNNNAGG	2 cut(s)	214, 316
EcoRI	GAATTC	2 cut(s)	204, 306
EcoT14I	CCWWGG	7 cut(s)	42, 84, 160, 225, 268, 327, 370
ErhI	CCWWGG	7 cut(s)	42, 84, 160, 225, 268, 327, 370
FaeI	CATG	1 cut(s)	610
FaiI	YATR	6 cut(s)	150, 192, 201, 294, 303, 608
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	1 cut(s)	606
Fnu4HI	GCNGC	4 cut(s)	428, 431, 531, 648
FokI	GGATG	9 cut(s)	59, 83, 134, 242, 344, 406, 581, 660, 707
Fsp4HI	GCNGC	4 cut(s)	428, 431, 531, 648
FspBI	CTAG	4 cut(s)	161, 269, 371, 707
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	4 cut(s)	428, 431, 531, 648
HaeIII	GGCC	2 cut(s)	41, 116
HapII	CCGG	5 cut(s)	5, 139, 258, 615, 692
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	1 cut(s)	610
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	1 cut(s)	463
HpaII	CCGG	5 cut(s)	5, 139, 258, 615, 692
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	2 cut(s)	58, 133
Hpy188I	TCNGA	1 cut(s)	733
Hpy8I	GTNNAC	2 cut(s)	58, 133
Hpy99I	CGWCG	1 cut(s)	628
HpyAV	CCTTC	7 cut(s)	83, 106, 159, 210, 267, 312, 369
HpyCH4III	ACNGT	2 cut(s)	513, 628
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	413, 427, 433, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 701
HpyF3I	CTNAG	4 cut(s)	248, 350, 459, 732
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	610
HspAI	GCGC	1 cut(s)	494
Kpn2I	TCCGGA	1 cut(s)	257
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	7 cut(s)	254, 356, 520, 540, 571, 655, 682
LpnPI	CCDG	9 cut(s)	18, 152, 271, 345, 399, 489, 628, 664, 705
Lsp1109I	GCAGC	4 cut(s)	417, 439, 517, 634
LweI	GCATC	2 cut(s)	61, 481
MaeI	CTAG	4 cut(s)	161, 269, 371, 707
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	2 cut(s)	13, 419
MalI	GATC	7 cut(s)	256, 358, 522, 542, 573, 657, 684
MboI	GATC	7 cut(s)	254, 356, 520, 540, 571, 655, 682
MboII	GAAGA	3 cut(s)	47, 232, 334
MfeI	CAATTG	1 cut(s)	470
MflI	RGATCY	4 cut(s)	254, 356, 520, 682
MluCI	AATT	6 cut(s)	204, 306, 451, 470, 558, 665
MnlI	CCTC	9 cut(s)	31, 96, 112, 172, 220, 280, 322, 384, 439
MroI	TCCGGA	1 cut(s)	257
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	7 cut(s)	51, 107, 126, 183, 234, 336, 516
MspA1I	CMGCKG	1 cut(s)	430
MspI	CCGG	5 cut(s)	5, 139, 258, 615, 692
MspR9I	CCNGG	2 cut(s)	140, 616
MunI	CAATTG	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	500, 701
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	2 cut(s)	140, 616
NdeII	GATC	7 cut(s)	254, 356, 520, 540, 571, 655, 682
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	610
NlaIV	GGNNCC	6 cut(s)	240, 256, 342, 554, 684, 718
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	419
PaeR7I	CTCGAG	1 cut(s)	443
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	463
PflMI	CCANNNNNTGG	1 cut(s)	562
PkrI	GCNGC	4 cut(s)	429, 432, 532, 649
PspN4I	GGNNCC	6 cut(s)	240, 256, 342, 554, 684, 718
PspPI	GGNCC	3 cut(s)	187, 289, 717
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	4 cut(s)	254, 356, 520, 682
PvuII	CAGCTG	1 cut(s)	430
SaqAI	TTAA	7 cut(s)	51, 107, 126, 183, 234, 336, 516
SatI	GCNGC	4 cut(s)	428, 431, 531, 648
Sau3AI	GATC	7 cut(s)	254, 356, 520, 540, 571, 655, 682
Sau96I	GGNCC	3 cut(s)	187, 289, 717
ScrFI	CCNGG	2 cut(s)	140, 616
SfaNI	GCATC	2 cut(s)	61, 481
SfcI	CTRYAG	1 cut(s)	411
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	3 cut(s)	187, 289, 717
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	204, 306, 451, 470, 558, 665
SsiI	CCGC	3 cut(s)	74, 598, 695
SspMI	CTAG	4 cut(s)	161, 269, 371, 707
StyD4I	CCNGG	2 cut(s)	138, 614
StyI	CCWWGG	7 cut(s)	42, 84, 160, 225, 268, 327, 370
TaaI	ACNGT	2 cut(s)	513, 628
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	4 cut(s)	444, 570, 581, 658
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	6 cut(s)	204, 306, 451, 470, 558, 665
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	7 cut(s)	51, 107, 126, 183, 234, 336, 516
Tru9I	TTAA	7 cut(s)	51, 107, 126, 183, 234, 336, 516
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	4 cut(s)	427, 430, 530, 647
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	48, 410, 623
TspGWI	ACGGA	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	562
VpaK11BI	GGWCC	3 cut(s)	187, 289, 717
XagI	CCTNNNNNAGG	2 cut(s)	214, 316
XapI	RAATTY	3 cut(s)	204, 306, 558
XcmI	CCANNNNNNNNNTGG	2 cut(s)	197, 299
XhoI	CTCGAG	1 cut(s)	443
XmaJI	CCTAGG	3 cut(s)	160, 268, 370
XspI	CTAG	4 cut(s)	161, 269, 371, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.