Rorug02G0493700

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006688
Physical Location & Seq
Forward (+)
62275795 .. 62276955
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0493700.1

Sequence Viewer

Length: 543 bp
ATGTTGGACGGGTTTGTGCAGGTTGGTGATTTGGATTCTGCTTGGCAGTTTTTTGAGAAGATTCCAGACCCGAATATTGTTTCGTGGGTTACAATGTTGTGTGGGTTTGCGCAAAATGGGAAGATTGCGCAGGCAGAGGACCTCTTTGAGCAGACGCCAAGTAGAAATGTGGTTGATTGGAATGCAATGCTTGCAGGCTATGTTCAAGACCACCAAATTGACAAGGCTGTGAAAATTTTTAGGGATATGCCAGAGATGGATTCTGTATCATGGACTACAATGATCAATGGGTATGTTAGAGTTGGCAAGTTTGACGAAACAAGGGAATTGCTAAACCGGATGCCATGCAAGAACATTGCAGCACAAACAGCAATGATATCTGGATATGCTCATAATGGAAGGATGGATGAAGCAAGTCAGATCTTCAATCAGATTGCTATTCGTGATGGTGTTTGTTGGAACACAATGGTTGCAGGCTATGCTAAGTGTGGCAGAATGGTTGAAGCTCTATCTCTTTTCAGAAAAATGCTAACAAGGATGTAG

Protein Analysis

180

Amino Acids

20.43

Weight (kDa)

5.38

Isoelectric Point (pI)

24.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 55 - 85 3.6e-06 PPR repeat family
PPR_2 PF13041 87 - 119 2.6e-07 PPR repeat family
PPR PF01535 89 - 119 1.1e-07 PPR repeat
PPR_2 PF13041 149 - 177 2.4e-06 PPR repeat family
PPR_1 PF12854 149 - 176 4.9e-06 PPR repeat
PPR PF01535 151 - 178 8e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 111, 129
Acc36I ACCTGC 1 cut(s) 10
AcsI RAATTY 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 155
AgsI TTSAA 3 cut(s) 206, 427, 503
AluBI AGCT 1 cut(s) 506
AluI AGCT 1 cut(s) 506
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 1 cut(s) 234
AspLEI GCGC 2 cut(s) 112, 130
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 371
BccI CCATC 3 cut(s) 250, 397, 440
BclI TGATCA 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 420
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmsI GCATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 336
Bse3DI GCAATG 3 cut(s) 192, 354, 378
BseGI GGATG 4 cut(s) 345, 408, 412, 543
BseMI GCAATG 3 cut(s) 192, 354, 378
BseXI GCAGC 1 cut(s) 371
BsgI GTGCAG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 337
BsmI GAATGC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 282, 420
BspMI ACCTGC 1 cut(s) 10
BsrDI GCAATG 3 cut(s) 192, 354, 378
BssMI GATC 2 cut(s) 282, 420
BssNI GRCGYC 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 155
BstAPI GCANNNNNTGC 2 cut(s) 191, 479
BstC8I GCNNGC 4 cut(s) 132, 192, 196, 475
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 4 cut(s) 345, 408, 412, 543
BstHHI GCGC 2 cut(s) 112, 130
BstKTI GATC 2 cut(s) 285, 423
BstMBI GATC 2 cut(s) 282, 420
BstMWI GCNNNNNNNGC 3 cut(s) 191, 368, 479
BstV1I GCAGC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BtsCI GGATG 4 cut(s) 345, 408, 412, 543
BveI ACCTGC 1 cut(s) 10
Cac8I GCNNGC 4 cut(s) 132, 192, 196, 475
CfoI GCGC 2 cut(s) 112, 130
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 163
CviAII CATG 2 cut(s) 270, 345
CviJI RGCY 4 cut(s) 198, 227, 477, 506
CviKI_1 RGCY 4 cut(s) 198, 227, 477, 506
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 284, 422
DpnII GATC 2 cut(s) 282, 420
Eco32I GATATC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoRV GATATC 1 cut(s) 378
FaeI CATG 2 cut(s) 273, 348
FaiI YATR 8 cut(s) 201, 248, 271, 294, 346, 387, 393, 480
FatI CATG 2 cut(s) 269, 344
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 3 cut(s) 352, 415, 419
Fsp4HI GCNGC 1 cut(s) 360
FspI TGCGCA 2 cut(s) 111, 129
GlaI GCGC 2 cut(s) 111, 129
GluI GCNGC 1 cut(s) 360
HapII CCGG 1 cut(s) 337
HgaI GACGC 1 cut(s) 163
HhaI GCGC 2 cut(s) 112, 130
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 2 cut(s) 273, 348
Hin6I GCGC 2 cut(s) 110, 128
HinP1I GCGC 2 cut(s) 110, 128
HinfI GANTC 3 cut(s) 35, 61, 260
HpaII CCGG 1 cut(s) 337
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 3 cut(s) 420, 432, 521
Hpy188III TCNNGA 4 cut(s) 65, 206, 381, 443
HpyAV CCTTC 1 cut(s) 393
HpyCH4V TGCA 6 cut(s) 19, 185, 194, 348, 359, 473
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 368, 479
HpyF3I CTNAG 1 cut(s) 483
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 2 cut(s) 273, 348
HspAI GCGC 2 cut(s) 110, 128
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 2 cut(s) 282, 420
LpnPI CCDG 8 cut(s) 5, 78, 116, 180, 264, 350, 366, 459
Lsp1109I GCAGC 1 cut(s) 371
LweI GCATC 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 284, 422
MboI GATC 2 cut(s) 282, 420
MboII GAAGA 3 cut(s) 70, 133, 415
MflI RGATCY 1 cut(s) 420
MluCI AATT 3 cut(s) 216, 234, 326
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 2 cut(s) 130, 152
MspI CCGG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 187
MwoI GCNNNNNNNGC 3 cut(s) 191, 368, 479
NdeII GATC 2 cut(s) 282, 420
NlaIII CATG 2 cut(s) 273, 348
NsbI TGCGCA 2 cut(s) 111, 129
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 3 cut(s) 35, 61, 260
PkrI GCNGC 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
PsuI RGATCY 1 cut(s) 420
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 2 cut(s) 282, 420
Sau96I GGNCC 1 cut(s) 139
SetI ASST 3 cut(s) 24, 144, 508
SfaNI GCATC 1 cut(s) 330
SinI GGWCC 1 cut(s) 139
Sse9I AATT 3 cut(s) 216, 234, 326
SspI AATATT 1 cut(s) 76
TasI AATT 3 cut(s) 216, 234, 326
TfiI GAWTC 3 cut(s) 35, 61, 260
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.