Rh6AG067500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006688
Physical Location & Seq
Reverse (-)
9856526 .. 9859015
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG067500.1

Sequence Viewer

Length: 717 bp
ATGTGTGTTTCAGCTGTTGCTGATGCAGACTCGATCTCCCTTGACCAGAGTGGATCTGGAATTCCCTCAGGAAGGAAGGCCAAGGATGTTAAGGTTTTGGACCAGAGTGGGTCTGGAAATCCCCCAGGAAGGAAAGCCAATGAGGTTAAGGCTCAGTCTAAATCTGAAATAGCAGTTGCTGCTCGTCCAGTTGAGCCATTGAGGAGGAACCCACCAAGAACTGCACGTCGTGACGCGAAGCTTCGACAATTGAAGGCTCTCATACCTCCTGTCCCTGTGCAAGAGCAGCGGGAAGCGTTATCAGTAGAACGCACTACTTTGCTTCCATTAGCTGATGCGCTTTCAGCTGGGGAACGGTTTAAGGATCTTATTGCTGCTGGTGATCCATCATTGGGTGCTTTGACAATGATGGCTTTGAAAAAGTTTCAAATTTTCGATTTCGATCACAGCCCGCTTGCCGCTTACATCTGCAAGTGCATGAACGCCAGGCAGATGACGGTTGCTGCTTCTATTGTGGCTGCCAGGGATCGATGTCAGTTTGCCCATCCAAAGGATCCAAATCCGGCGGATTTTGTTCCAGTTTTGGGTTTGTTGTTGAAAGCTGTGGGTCATCTTTGGGCTATTCTAGCCGTCGAGAATTCATTAAGTTTGGATGATGTCCTCAAACTCTCAAAGATCGGGATCTCGGAGTGGGCAGCCTCAAGAAGAGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

25.51

Weight (kDa)

9.36

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 236
AciI CCGC 4 cut(s) 289, 452, 459, 566
AclWI GGATC 7 cut(s) 61, 372, 377, 534, 548, 561, 689
AcsI RAATTY 3 cut(s) 60, 429, 637
AdeI CACNNNGTG 1 cut(s) 230
AfiI CCNNNNNNNGG 5 cut(s) 72, 129, 392, 550, 584
AgsI TTSAA 4 cut(s) 253, 418, 428, 598
AjiI CACGTC 1 cut(s) 227
AjnI CCWGG 3 cut(s) 124, 485, 521
AluBI AGCT 5 cut(s) 14, 241, 332, 347, 602
AluI AGCT 5 cut(s) 14, 241, 332, 347, 602
AlwI GGATC 7 cut(s) 61, 372, 377, 534, 548, 561, 689
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 6 cut(s) 179, 286, 374, 503, 518, 695
ApoI RAATTY 3 cut(s) 60, 429, 637
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 67
BamHI GGATCC 1 cut(s) 553
BbvI GCAGC 6 cut(s) 166, 298, 361, 490, 505, 707
BccI CCATC 3 cut(s) 394, 403, 552
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 3 cut(s) 126, 487, 523
BfaI CTAG 1 cut(s) 626
BisI GCNGC 7 cut(s) 180, 287, 375, 459, 504, 519, 696
BlsI GCNGC 7 cut(s) 181, 288, 376, 460, 505, 520, 697
Bme1390I CCNGG 3 cut(s) 126, 487, 523
Bme18I GGWCC 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 2 cut(s) 209, 555
BmrFI CCNGG 3 cut(s) 126, 487, 523
BmsI GCATC 2 cut(s) 13, 325
BpuEI CTTGAG 1 cut(s) 685
Bsa29I ATCGAT 1 cut(s) 529
BsaBI GATNNNNATC 3 cut(s) 441, 558, 680
BsaJI CCNNGG 3 cut(s) 81, 124, 522
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 129, 392, 550, 584
Bse1I ACTGG 2 cut(s) 188, 578
Bse21I CCTNAGG 1 cut(s) 67
Bse8I GATNNNNATC 3 cut(s) 441, 558, 680
BseBI CCWGG 3 cut(s) 126, 487, 523
BseCI ATCGAT 1 cut(s) 529
BseDI CCNNGG 3 cut(s) 81, 124, 522
BseGI GGATG 3 cut(s) 91, 544, 658
BseJI GATNNNNATC 3 cut(s) 441, 558, 680
BseLI CCNNNNNNNGG 5 cut(s) 72, 129, 392, 550, 584
BseMII CTCAG 2 cut(s) 81, 167
BseNI ACTGG 2 cut(s) 188, 578
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 6 cut(s) 166, 298, 361, 490, 505, 707
BseYI CCCAGC 1 cut(s) 347
BsgI GTGCAG 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 529
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 5 cut(s) 72, 129, 392, 550, 584
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 1 cut(s) 80
Bsp143I GATC 9 cut(s) 33, 53, 364, 382, 442, 526, 553, 675, 681
BspACI CCGC 4 cut(s) 289, 452, 459, 566
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 2 cut(s) 80, 166
BspDI ATCGAT 1 cut(s) 529
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 209, 555
BspPI GGATC 7 cut(s) 61, 372, 377, 534, 548, 561, 689
BsrI ACTGG 2 cut(s) 188, 578
BssECI CCNNGG 3 cut(s) 81, 124, 522
BssMI GATC 9 cut(s) 33, 53, 364, 382, 442, 526, 553, 675, 681
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 3 cut(s) 126, 487, 523
Bst4CI ACNGT 2 cut(s) 357, 499
Bst6I CTCTTC 1 cut(s) 700
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 452, 456
BstDEI CTNAG 2 cut(s) 67, 153
BstENI CCTNNNNNAGG 1 cut(s) 70
BstF5I GGATG 3 cut(s) 91, 544, 658
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 9 cut(s) 36, 56, 367, 385, 445, 529, 556, 678, 684
BstMBI GATC 9 cut(s) 33, 53, 364, 382, 442, 526, 553, 675, 681
BstMWI GCNNNNNNNGC 4 cut(s) 179, 286, 344, 626
BstNI CCWGG 3 cut(s) 126, 487, 523
BstSCI CCNGG 3 cut(s) 124, 485, 521
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 6 cut(s) 166, 298, 361, 490, 505, 707
BstX2I RGATCY 4 cut(s) 53, 364, 553, 681
BstYI RGATCY 4 cut(s) 53, 364, 553, 681
Bsu15I ATCGAT 1 cut(s) 529
Bsu36I CCTNAGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 80
BsuTUI ATCGAT 1 cut(s) 529
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 3 cut(s) 91, 544, 658
Cac8I GCNNGC 2 cut(s) 452, 456
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 100
ClaI ATCGAT 1 cut(s) 529
CseI GACGC 1 cut(s) 242
CviAII CATG 1 cut(s) 478
DdeI CTNAG 2 cut(s) 67, 153
DpnI GATC 9 cut(s) 35, 55, 366, 384, 444, 528, 555, 677, 683
DpnII GATC 9 cut(s) 33, 53, 364, 382, 442, 526, 553, 675, 681
DraIII CACNNNGTG 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 700
EarI CTCTTC 1 cut(s) 700
EciI GGCGGA 1 cut(s) 581
Eco130I CCWWGG 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 100
Eco81I CCTNAGG 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 70
EcoRI GAATTC 2 cut(s) 60, 637
EcoRII CCWGG 3 cut(s) 124, 485, 521
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 481
FaiI YATR 2 cut(s) 263, 479
FaqI GGGAC 1 cut(s) 257
FatI CATG 1 cut(s) 477
FauI CCCGC 2 cut(s) 282, 459
Fnu4HI GCNGC 7 cut(s) 180, 287, 375, 459, 504, 519, 696
FokI GGATG 3 cut(s) 98, 531, 665
Fsp4HI GCNGC 7 cut(s) 180, 287, 375, 459, 504, 519, 696
FspBI CTAG 1 cut(s) 626
GlaI GCGC 1 cut(s) 339
GluI GCNGC 7 cut(s) 180, 287, 375, 459, 504, 519, 696
GsaI CCCAGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 563
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 340
Hin1II CATG 1 cut(s) 481
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 563
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 2 cut(s) 166, 688
Hpy188III TCNNGA 7 cut(s) 57, 69, 114, 230, 634, 679, 702
Hpy99I CGWCG 2 cut(s) 231, 635
HpyAV CCTTC 4 cut(s) 66, 70, 123, 247
HpyCH4III ACNGT 2 cut(s) 357, 499
HpyCH4IV ACGT 1 cut(s) 226
HpyCH4V TGCA 5 cut(s) 26, 224, 280, 471, 477
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 286, 344, 626
HpyF3I CTNAG 2 cut(s) 67, 153
HpySE526I ACGT 1 cut(s) 226
Hsp92II CATG 1 cut(s) 481
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 9 cut(s) 33, 53, 364, 382, 442, 526, 553, 675, 681
Lsp1109I GCAGC 6 cut(s) 166, 298, 361, 490, 505, 707
LweI GCATC 2 cut(s) 13, 325
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 230
MalI GATC 9 cut(s) 35, 55, 366, 384, 444, 528, 555, 677, 683
MboI GATC 9 cut(s) 33, 53, 364, 382, 442, 526, 553, 675, 681
MboII GAAGA 1 cut(s) 717
MfeI CAATTG 1 cut(s) 248
MflI RGATCY 4 cut(s) 53, 364, 553, 681
MluCI AATT 4 cut(s) 60, 248, 429, 637
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 8 cut(s) 76, 136, 195, 198, 276, 671, 701, 709
MseI TTAA 4 cut(s) 90, 147, 360, 644
MspA1I CMGCKG 3 cut(s) 14, 289, 347
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 3 cut(s) 126, 487, 523
MunI CAATTG 1 cut(s) 248
MvaI CCWGG 3 cut(s) 126, 487, 523
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 4 cut(s) 179, 286, 344, 626
NdeII GATC 9 cut(s) 33, 53, 364, 382, 442, 526, 553, 675, 681
NlaIII CATG 1 cut(s) 481
NlaIV GGNNCC 2 cut(s) 209, 555
NmuCI GTSAC 1 cut(s) 230
PkrI GCNGC 7 cut(s) 181, 288, 376, 460, 505, 520, 697
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Psp6I CCWGG 3 cut(s) 124, 485, 521
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 3 cut(s) 124, 485, 521
PspN4I GGNNCC 2 cut(s) 209, 555
PspPI GGNCC 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 4 cut(s) 53, 364, 553, 681
PvuII CAGCTG 2 cut(s) 14, 347
SaqAI TTAA 4 cut(s) 90, 147, 360, 644
SatI GCNGC 7 cut(s) 180, 287, 375, 459, 504, 519, 696
Sau3AI GATC 9 cut(s) 33, 53, 364, 382, 442, 526, 553, 675, 681
Sau96I GGNCC 1 cut(s) 100
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 3 cut(s) 126, 487, 523
SfaNI GCATC 2 cut(s) 13, 325
SinI GGWCC 1 cut(s) 100
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 4 cut(s) 60, 248, 429, 637
SsiI CCGC 4 cut(s) 289, 452, 459, 566
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 3 cut(s) 124, 485, 521
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 357, 499
TaiI ACGT 1 cut(s) 229
TaqI TCGA 6 cut(s) 32, 244, 435, 441, 529, 633
TasI AATT 4 cut(s) 60, 248, 429, 637
TauI GCSGC 1 cut(s) 461
Tru1I TTAA 4 cut(s) 90, 147, 360, 644
Tru9I TTAA 4 cut(s) 90, 147, 360, 644
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 6 cut(s) 179, 286, 374, 503, 518, 695
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 494, 630
VpaK11BI GGWCC 1 cut(s) 100
XagI CCTNNNNNAGG 1 cut(s) 70
XapI RAATTY 3 cut(s) 60, 429, 637
XcmI CCANNNNNNNNNTGG 2 cut(s) 53, 110
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.