Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006688

Physical Location & Seq

Genomic Coordinates Reverse (-)

5926729 .. 5927782

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG057600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATCTTCCACTAGCTGATGCACTTGTGGCAGGGGAACGGTTGAAGGATCTTATTGCTGCTGGTGATCCATCATTGGGTGCTTTGACAATGATGGCTTTGAAGAAGGTGGTCTTTTTTTGGCAGCACCACTACTCAACCAAGTTTCAAATTTCCGATTTTGATCACAGCCCGATTGCCGCCTACATCTGCAAGTGCATGAACATCGGGCAGATGACGGTTGCTGCTTCTATTGTGGCTGCCAGAGATCGATGTCAGTTTGCCCATCCAAAGGATCCTAATCCGGCGGATTTTGCTCTAGTTTTGGGTTTGCTGTTGAAAGCTGTGGGTCATCTTTGGGCCATTCTGGCCGTCGAGAATTCACTAAGTTTGGATGACGTCCTCAAACTCTCAAAGATCAGGATCTCGGAGTGGGCAGCCTCAAGAAGAGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.86

Weight (kDa)

6.95

Isoelectric Point (pI)

21.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20810
fragaria_vesca	FvH4_6g44800
malus_domestica	MD09G1093100.v1.1 MD17G1083200.v1.1
prunus_persica	Prupe.3G232100_v2.0.a1
pyrus_communis	pycom09g01830 pycom17g08100
rosa_chinensis	RchiOBHm_Chr2g0161971 RchiOBHm_Chr6g0254251
rosa_laevigata	RLG00000014931 RLG00000021312
rosa_multiflora	Rmu_sc0003711.1_g000023 Rmu_sc0008428.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088430 Rroxscaffold_7G00211000 Rroxscaffold_7G00211020
rosa_rugosa	Rorug02G0493700
rosa_samantha	Rh2AG559600 Rh2BG573000 Rh2CG543100 Rh2DG582800 Rh6AG067500 Rh6BG060600 Rh6DG057600
rosa_wichuraiana	Rw2G046310 Rw6G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AciI	CCGC	2 cut(s)	180, 287
AclWI	GGATC	6 cut(s)	12, 57, 62, 269, 282, 410
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	150, 358
AcyI	GRCGYC	1 cut(s)	378
AfiI	CCNNNNNNNGG	2 cut(s)	77, 271
AgsI	TTSAA	4 cut(s)	46, 103, 149, 319
AluBI	AGCT	2 cut(s)	17, 323
AluI	AGCT	2 cut(s)	17, 323
AlwI	GGATC	6 cut(s)	12, 57, 62, 269, 282, 410
AoxI	GGCC	2 cut(s)	339, 348
ApeKI	GCWGC	5 cut(s)	59, 124, 224, 239, 416
ApoI	RAATTY	2 cut(s)	150, 358
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	274
BbvI	GCAGC	5 cut(s)	46, 136, 211, 226, 428
BccI	CCATC	3 cut(s)	79, 88, 273
BceAI	ACGGC	1 cut(s)	335
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BclI	TGATCA	1 cut(s)	163
BfaI	CTAG	2 cut(s)	14, 299
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	6 cut(s)	60, 125, 180, 225, 240, 417
BlsI	GCNGC	6 cut(s)	61, 126, 181, 226, 241, 418
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	276
BmsI	GCATC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	250
BsaBI	GATNNNNATC	3 cut(s)	162, 279, 401
BsaHI	GRCGYC	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 271
Bse8I	GATNNNNATC	3 cut(s)	162, 279, 401
BseCI	ATCGAT	1 cut(s)	250
BseGI	GGATG	2 cut(s)	265, 379
BseJI	GATNNNNATC	3 cut(s)	162, 279, 401
BseLI	CCNNNNNNNGG	2 cut(s)	77, 271
BseXI	GCAGC	5 cut(s)	46, 136, 211, 226, 428
BshFI	GGCC	2 cut(s)	341, 350
BshVI	ATCGAT	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	77, 271
BsnI	GGCC	2 cut(s)	341, 350
Bsp143I	GATC	8 cut(s)	4, 49, 67, 163, 247, 274, 396, 402
BspACI	CCGC	2 cut(s)	180, 287
BspANI	GGCC	2 cut(s)	341, 350
BspDI	ATCGAT	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	6 cut(s)	12, 57, 62, 269, 282, 410
BssMI	GATC	8 cut(s)	4, 49, 67, 163, 247, 274, 396, 402
BssNI	GRCGYC	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	42, 220
Bst6I	CTCTTC	1 cut(s)	421
BstACI	GRCGYC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	265, 379
BstKTI	GATC	8 cut(s)	7, 52, 70, 166, 250, 277, 399, 405
BstMBI	GATC	8 cut(s)	4, 49, 67, 163, 247, 274, 396, 402
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 293, 347
BstV1I	GCAGC	5 cut(s)	46, 136, 211, 226, 428
BstX2I	RGATCY	4 cut(s)	4, 49, 274, 402
BstYI	RGATCY	4 cut(s)	4, 49, 274, 402
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	341, 350
BsuTUI	ATCGAT	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	265, 379
Cfr13I	GGNCC	1 cut(s)	339
ClaI	ATCGAT	1 cut(s)	250
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	8 cut(s)	17, 98, 171, 239, 323, 341, 350, 419
CviKI_1	RGCY	8 cut(s)	17, 98, 171, 239, 323, 341, 350, 419
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	8 cut(s)	6, 51, 69, 165, 249, 276, 398, 404
DpnII	GATC	8 cut(s)	4, 49, 67, 163, 247, 274, 396, 402
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
EciI	GGCGGA	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	358
FaeI	CATG	1 cut(s)	202
FaiI	YATR	1 cut(s)	200
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	6 cut(s)	60, 125, 180, 225, 240, 417
FokI	GGATG	2 cut(s)	252, 386
Fsp4HI	GCNGC	6 cut(s)	60, 125, 180, 225, 240, 417
FspBI	CTAG	2 cut(s)	14, 299
GluI	GCNGC	6 cut(s)	60, 125, 180, 225, 240, 417
HaeIII	GGCC	2 cut(s)	341, 350
HapII	CCGG	1 cut(s)	284
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	1 cut(s)	202
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	157, 409
Hpy188III	TCNNGA	3 cut(s)	355, 400, 423
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	40, 100
HpyCH4III	ACNGT	2 cut(s)	42, 220
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	23, 192, 198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 293, 347
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	8 cut(s)	4, 49, 67, 163, 247, 274, 396, 402
LpnPI	CCDG	6 cut(s)	18, 48, 256, 297, 332, 385
Lsp1109I	GCAGC	5 cut(s)	46, 136, 211, 226, 428
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	14, 299
MaeII	ACGT	1 cut(s)	378
MalI	GATC	8 cut(s)	6, 51, 69, 165, 249, 276, 398, 404
MboI	GATC	8 cut(s)	4, 49, 67, 163, 247, 274, 396, 402
MboII	GAAGA	2 cut(s)	115, 438
MflI	RGATCY	4 cut(s)	4, 49, 274, 402
MluCI	AATT	2 cut(s)	150, 358
MnlI	CCTC	3 cut(s)	392, 422, 430
MspI	CCGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	29, 293, 347
NdeII	GATC	8 cut(s)	4, 49, 67, 163, 247, 274, 396, 402
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	276
PkrI	GCNGC	6 cut(s)	61, 126, 181, 226, 241, 418
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	339
PsuI	RGATCY	4 cut(s)	4, 49, 274, 402
SatI	GCNGC	6 cut(s)	60, 125, 180, 225, 240, 417
Sau3AI	GATC	8 cut(s)	4, 49, 67, 163, 247, 274, 396, 402
Sau96I	GGNCC	1 cut(s)	339
SetI	ASST	5 cut(s)	19, 111, 325, 381, 433
SfaNI	GCATC	1 cut(s)	10
SfiI	GGCCNNNNNGGCC	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	2 cut(s)	150, 358
SsiI	CCGC	2 cut(s)	180, 287
SspMI	CTAG	2 cut(s)	14, 299
TaaI	ACNGT	2 cut(s)	42, 220
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	2 cut(s)	250, 354
TasI	AATT	2 cut(s)	150, 358
TauI	GCSGC	1 cut(s)	182
TseI	GCWGC	5 cut(s)	59, 124, 224, 239, 416
TspDTI	ATGAA	1 cut(s)	215
XapI	RAATTY	2 cut(s)	150, 358
XspI	CTAG	2 cut(s)	14, 299
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.