Rw2G046310

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006688
Physical Location & Seq
Forward (+)
73609386 .. 73612289
2904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046310.1

Sequence Viewer

Length: 1140 bp
ATGATTATGAGACTTAAAGCCAAAATACAATCTCTGGAAGAACAGATGAGTTCTGTGAGTGAGAAAAGTTCCAAGTATGGACAGATAGCTGCCGAGGAAGTCCCGAAAAGTCTTTACTGCCTTGGTATTCAGCTGACTAGTGAATGGTTCAGACACCCAAATCTACAGAGGAAACTCAAGGACAGAAAAATAGACATGAAAGTAAAGGATAACAATCTCTATCATTTCTGTGTATTCTCTGACAACATCCTGGCAACTTCAGTTGTGGTCAATTCAACAGCATTAAGTTCCAACAATCCAGATAAGGTCGTCTTCCATCTTGTAACCGATGAAATCAACTATGCTGCAATGAAGGCCTGGTTTTCTATGAACAGCTTCAGAGGAGTGACTGTCGAGGTTCAAAAGTTTGAGGACTTCAAATGGCTGAATGCTTCTTATGTTCCTGTGCTTAAGCAGCTCCAAGACTCTGAAACTCAAAGTTACTATTTTTCTGGAAACAGTGATGATGGCCGGACACCAATCAAGTTTCGGAACCCAAAGTATCTTTCTATGCTTAACCATCTACGGTTTTATATTCCAGAAGTCTTTCCTGCCCTGAAGAAGGTGGTATTCCTTGATGATGATGTTGTTGTCCAGAAGGATCTGTCTGCTCTGTTCTCGATTGATTTGAATGGTAATGTAAATGGAGCAGTCGAGACATGCATGGAGACGTTTCACAGATACCATAAATATCTGAACTACTCTCACCCTCTCATACGATCACATTTTGATCCCGATGCCTGTGGATGGGCATTTGGAATGAATGTGTTTGATTTGGTTCAGTGGAGGAATAGGAATGTTACTGGCATCTACCATTACTGGCAGGAAAGAAATGTTGATCGGACGTTGTGGAAACTTGGCACATTGCCACCTGGATTGTTGACGTTCTATGGACTGACTGAGCCTTTGGAGCCCTCATGGCATGTTTTGGGTTTAGGGTACACAACTGTTGATCCTCATTTGATAGAGAAGGGTGCTGTGCTGCACTACAATGGAAACTCAAAACCGTGGTTGAAGATTGGGATGGAAAAGTACAAGCCCCTTTGGGAGAAATTTATTGATTATACTCATCCTTTGTTGCAACGATGCAATTTCCATTGA

Protein Analysis

379

Amino Acids

44.13

Weight (kDa)

8.39

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 81 - 353 7.8e-70 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 648, 764, 986
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 1 cut(s) 1091
AcuI CTGAAG 3 cut(s) 243, 361, 617
AfaI GTAC 2 cut(s) 980, 1073
AfiI CCNNNNNNNGG 2 cut(s) 601, 786
AflII CTTAAG 1 cut(s) 449
AgsI TTSAA 5 cut(s) 276, 401, 418, 670, 1054
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 3 cut(s) 249, 356, 910
AjuI GAANNNNNNNTTGG 2 cut(s) 529, 561
AluBI AGCT 4 cut(s) 89, 133, 375, 457
AluI AGCT 4 cut(s) 89, 133, 375, 457
Alw26I GTCTC 3 cut(s) 4, 689, 701
AlwI GGATC 3 cut(s) 648, 764, 986
AoxI GGCC 2 cut(s) 354, 508
ApeKI GCWGC 4 cut(s) 89, 344, 454, 1021
ApoI RAATTY 1 cut(s) 1091
ArsI GACNNNNNNTTYG 2 cut(s) 928, 960
Asp700I GAANNNNTTC 2 cut(s) 374, 585
AsuHPI GGTGA 1 cut(s) 737
BanII GRGCYC 1 cut(s) 954
BbsI GAAGAC 1 cut(s) 304
BbvI GCAGC 4 cut(s) 76, 331, 466, 1008
BccI CCATC 5 cut(s) 324, 500, 567, 780, 1057
BciT130I CCWGG 3 cut(s) 251, 358, 912
BcoDI GTCTC 3 cut(s) 4, 689, 701
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 164
BfrI CTTAAG 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 958
BisI GCNGC 4 cut(s) 90, 345, 455, 1022
BlsI GCNGC 4 cut(s) 91, 346, 456, 1023
Bme1390I CCNGG 3 cut(s) 251, 358, 912
BmiI GGNNCC 2 cut(s) 533, 951
BmrFI CCNGG 3 cut(s) 251, 358, 912
BmsI GCATC 3 cut(s) 766, 855, 1115
BpiI GAAGAC 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 93, 121, 1046
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 601, 786
Bse1I ACTGG 2 cut(s) 847, 863
Bse3DI GCAATG 2 cut(s) 354, 902
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 3 cut(s) 251, 358, 912
BseDI CCNNGG 3 cut(s) 93, 121, 1046
BseGI GGATG 4 cut(s) 246, 791, 1068, 1108
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 601, 786
BseMI GCAATG 2 cut(s) 354, 902
BseMII CTCAG 1 cut(s) 930
BseNI ACTGG 2 cut(s) 847, 863
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 4 cut(s) 76, 331, 466, 1008
BsgI GTGCAG 1 cut(s) 1007
BshFI GGCC 2 cut(s) 356, 510
BsiSI CCGG 1 cut(s) 511
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 601, 786
BsmAI GTCTC 3 cut(s) 4, 689, 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 356, 510
Bsp1286I GDGCHC 1 cut(s) 954
Bsp143I GATC 5 cut(s) 640, 758, 769, 877, 991
BspANI GGCC 2 cut(s) 356, 510
BspCNI CTCAG 1 cut(s) 931
BspLI GGNNCC 2 cut(s) 533, 951
BspPI GGATC 3 cut(s) 648, 764, 986
BspTI CTTAAG 1 cut(s) 449
BsrDI GCAATG 2 cut(s) 354, 902
BsrI ACTGG 2 cut(s) 847, 863
BssECI CCNNGG 3 cut(s) 93, 121, 1046
BssMI GATC 5 cut(s) 640, 758, 769, 877, 991
BssT1I CCWWGG 1 cut(s) 121
Bst2UI CCWGG 3 cut(s) 251, 358, 912
Bst4CI ACNGT 5 cut(s) 391, 500, 567, 988, 1047
BstAFI CTTAAG 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 939
BstDSI CCRYGG 1 cut(s) 1046
BstENI CCTNNNNNAGG 1 cut(s) 599
BstF5I GGATG 4 cut(s) 246, 791, 1068, 1108
BstKTI GATC 5 cut(s) 643, 761, 772, 880, 994
BstMAI GTCTC 3 cut(s) 4, 689, 701
BstMBI GATC 5 cut(s) 640, 758, 769, 877, 991
BstMWI GCNNNNNNNGC 4 cut(s) 353, 454, 949, 958
BstNI CCWGG 3 cut(s) 251, 358, 912
BstNSI RCATGY 2 cut(s) 702, 965
BstSCI CCNGG 3 cut(s) 249, 356, 910
BstSFI CTRYAG 1 cut(s) 164
BstV1I GCAGC 4 cut(s) 76, 331, 466, 1008
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 2 cut(s) 356, 510
BtgI CCRYGG 1 cut(s) 1046
BtsCI GGATG 4 cut(s) 246, 791, 1068, 1108
BtsIMutI CAGTG 2 cut(s) 505, 827
Csp6I GTAC 2 cut(s) 979, 1072
CspCI CAANNNNNGTGG 2 cut(s) 897, 932
CviAII CATG 5 cut(s) 196, 699, 703, 957, 962
CviQI GTAC 2 cut(s) 979, 1072
DdeI CTNAG 1 cut(s) 939
DpnI GATC 5 cut(s) 642, 760, 771, 879, 993
DpnII GATC 5 cut(s) 640, 758, 769, 877, 991
EaeI YGGCCR 1 cut(s) 508
Eco130I CCWWGG 1 cut(s) 121
Eco147I AGGCCT 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 954
Eco57I CTGAAG 3 cut(s) 243, 361, 617
EcoNI CCTNNNNNAGG 1 cut(s) 599
EcoRII CCWGG 3 cut(s) 249, 356, 910
EcoT14I CCWWGG 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 704
EcoT38I GRGCYC 1 cut(s) 954
ErhI CCWWGG 1 cut(s) 121
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 5 cut(s) 199, 702, 706, 960, 965
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 86
FatI CATG 5 cut(s) 195, 698, 702, 956, 961
Fnu4HI GCNGC 4 cut(s) 90, 345, 455, 1022
FokI GGATG 4 cut(s) 233, 798, 1075, 1095
FriOI GRGCYC 1 cut(s) 954
Fsp4HI GCNGC 4 cut(s) 90, 345, 455, 1022
FspBI CTAG 1 cut(s) 138
GluI GCNGC 4 cut(s) 90, 345, 455, 1022
HaeIII GGCC 2 cut(s) 356, 510
HapII CCGG 1 cut(s) 511
Hin1II CATG 5 cut(s) 199, 702, 706, 960, 965
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 1 cut(s) 464
HpaII CCGG 1 cut(s) 511
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 2 cut(s) 921, 981
Hpy188I TCNGA 7 cut(s) 152, 241, 380, 469, 531, 735, 882
Hpy188III TCNNGA 9 cut(s) 35, 103, 299, 492, 578, 634, 658, 694, 773
Hpy8I GTNNAC 2 cut(s) 921, 981
HpyAV CCTTC 4 cut(s) 346, 595, 631, 1003
HpyCH4III ACNGT 5 cut(s) 391, 500, 567, 988, 1047
HpyCH4IV ACGT 3 cut(s) 710, 884, 923
HpyCH4V TGCA 5 cut(s) 347, 702, 1024, 1120, 1128
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 454, 949, 958
HpyF3I CTNAG 1 cut(s) 939
HpySE526I ACGT 3 cut(s) 710, 884, 923
Hsp92II CATG 5 cut(s) 199, 702, 706, 960, 965
Kzo9I GATC 5 cut(s) 640, 758, 769, 877, 991
LmnI GCTCC 3 cut(s) 462, 686, 949
Lsp1109I GCAGC 4 cut(s) 76, 331, 466, 1008
LweI GCATC 3 cut(s) 766, 855, 1115
MaeI CTAG 1 cut(s) 138
MaeII ACGT 3 cut(s) 710, 884, 923
MaeIII GTNAC 4 cut(s) 322, 385, 479, 838
MalI GATC 5 cut(s) 642, 760, 771, 879, 993
MboI GATC 5 cut(s) 640, 758, 769, 877, 991
MboII GAAGA 4 cut(s) 50, 304, 610, 1066
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 1 cut(s) 954
MluCI AATT 3 cut(s) 271, 1091, 1129
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 9 cut(s) 88, 162, 374, 388, 403, 759, 819, 964, 1005
Mph1103I ATGCAT 1 cut(s) 704
MroXI GAANNNNTTC 2 cut(s) 374, 585
MseI TTAA 4 cut(s) 15, 284, 450, 555
MslI CAYNNNNRTG 2 cut(s) 228, 1029
MspA1I CMGCKG 1 cut(s) 133
MspCI CTTAAG 1 cut(s) 449
MspI CCGG 1 cut(s) 511
MspR9I CCNGG 3 cut(s) 251, 358, 912
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 3 cut(s) 251, 358, 912
MwoI GCNNNNNNNGC 4 cut(s) 353, 454, 949, 958
NdeII GATC 5 cut(s) 640, 758, 769, 877, 991
NlaIII CATG 5 cut(s) 199, 702, 706, 960, 965
NlaIV GGNNCC 2 cut(s) 533, 951
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 385
NsiI ATGCAT 1 cut(s) 704
NspI RCATGY 2 cut(s) 702, 965
PceI AGGCCT 1 cut(s) 356
PctI GAATGC 1 cut(s) 433
PdmI GAANNNNTTC 2 cut(s) 374, 585
PkrI GCNGC 4 cut(s) 91, 346, 456, 1023
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
Psp6I CCWGG 3 cut(s) 249, 356, 910
PspGI CCWGG 3 cut(s) 249, 356, 910
PspN4I GGNNCC 2 cut(s) 533, 951
PsuI RGATCY 1 cut(s) 640
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 2 cut(s) 980, 1073
RsaNI GTAC 2 cut(s) 979, 1072
RseI CAYNNNNRTG 2 cut(s) 228, 1029
SaqAI TTAA 4 cut(s) 15, 284, 450, 555
SatI GCNGC 4 cut(s) 90, 345, 455, 1022
Sau3AI GATC 5 cut(s) 640, 758, 769, 877, 991
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 3 cut(s) 251, 358, 912
SduI GDGCHC 1 cut(s) 954
SfaNI GCATC 3 cut(s) 766, 855, 1115
SfcI CTRYAG 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 228, 1029
SmlI CTYRAG 2 cut(s) 176, 449
SmoI CTYRAG 2 cut(s) 176, 449
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 3 cut(s) 271, 1091, 1129
SseBI AGGCCT 1 cut(s) 356
SspMI CTAG 1 cut(s) 138
StuI AGGCCT 1 cut(s) 356
StyD4I CCNGG 3 cut(s) 249, 356, 910
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 5 cut(s) 391, 500, 567, 988, 1047
TaiI ACGT 3 cut(s) 713, 887, 926
TaqI TCGA 3 cut(s) 393, 659, 693
TasI AATT 3 cut(s) 271, 1091, 1129
TatI WGTACW 1 cut(s) 1071
Tru1I TTAA 4 cut(s) 15, 284, 450, 555
Tru9I TTAA 4 cut(s) 15, 284, 450, 555
TscAI CASTG 2 cut(s) 505, 827
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 4 cut(s) 89, 344, 454, 1021
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 5 cut(s) 212, 345, 365, 383, 815
TspRI CASTG 2 cut(s) 505, 827
Vha464I CTTAAG 1 cut(s) 449
XagI CCTNNNNNAGG 1 cut(s) 599
XapI RAATTY 1 cut(s) 1091
XceI RCATGY 2 cut(s) 702, 965
XmnI GAANNNNTTC 2 cut(s) 374, 585
XspI CTAG 1 cut(s) 138
Zsp2I ATGCAT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.