MD09G1093100.v1.1

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
6809709 .. 6812989
3281 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1093100.v1.1.491

Sequence Viewer

Length: 1599 bp
ATGAGGCGGAGAGCCGCGGACTTCCGGAGGCCGCTCCGGCGGCGGTTTCCAAATGCGTTATGGTGGGCGCTGTGCGGGGTTGCGGTTTTGCTCTTCATTTTTACTTTGAGCAGAGTTAATCAGATGGAGTCCAGACCTGTCATTCCCATGAAATTCAGGAGTGATAGAATTATGGAAGGCCTTAATATTACCGACGAAATGTTGAGCCCCAACTCAGTTGCAAGGCAGCTCAATGACCAAATTGCTCTCGCAAAAGCATTTGTTGTGATTGCCAAAGAAAGTAACAACCTTCAGTTTGCTTGGGAATTAAGTGCCCAGATTCGCAGTTCGCAGATCCTGCTGTCAAATGCTGCAACCAGGCGAGTTCCTCTGACTGTTAGAGAATCGGAAACTGCAATCAGTGATATGGCACTTATACTGTACCAAGCACAGCAGCTCCATTATGATAGTGCTACCATGATCATGAGACTGAAAGCCAAAATCCAAACTCTGGAAGAACAAATGAGTTTGGTGAGCGACAAAAGTTCAAAGTATGGACAAATAGCTGCTGAAGAAGTCCCAAAAAGTCTCTACTGCCTTGGTATTCAGCTGACTAGTGAATGGTTCAGAAAGCCGAATATACAGAGGAAAATCAAGGACAGAAAGCAAATAGAAATGAAAGTAAAGGATAACAATCTCTATCATTTCTGCGTCTTCTCTGACAACATCCTAGCAACTTCAGTTGTGGTCAATTCAACTTCTATAAATTCCAAAAATCCAGATAAGATTGTCTTCCATCTTGTAACTGATGAAATCAACTATGCTGCAATGAAGGCCTGGTTTTCCATAAACAGCTTCAGAGGAGTAGCCGTTGAGGTTCAAAAGTTTGAGGATTTTACATGGTTGAATGCTTCTTATGTTCCTGTACTTAAGCAGCTCCAAGACTCTGATACTCAGAGTTATTATTTCTCTGGAAATAGTGATAATGGGCGGACACCAATCAAGTTTCGGAACCCCAAGTATCTTTCCATGCTTAATCATCTGAGGTTTTATATTCCGGAAGTTTTTCCTGCCCTGAAGAAGGTGGTTTTTCTGGATGATGATGTTGTGGTTAAGAAGGATCTATCTGATCTGTTCTCCATTAGTTTGAACGGTAATGTCAATGGTGCGGTGGAGACATGCATGGAGACATTTCACAGATACCATAAATATCTGAACTACTCTCACCCTCTCATAAGAGCGCATTTTGATCCTGATGCTTGTGGATGGGCGTTTGGGATGAATGTTTTTGATTTGGTTCAATGGAGGAAAAGGAATGTCACCGGCATCTACCACTACTGGCAGGAAAGAAATGTAGACCGGACATTGTGGAAACTCGGCACACTACCACCCGGATTGTTGACATTCTACGGATTGACAGAGCCTTTGGATGCCTCGTGGCATATTCTGGGTTTGGGCTACACAACCGTTGACCCTCACTTCATAGAGAAAGGTGCTGTGCTGCACTACAACGGCAACTCAAAACCGTGGTTGAAGATCGGAATGGAAAAGTACAAGCCCCTCTGGGAGAAATATGTTGATTATAGTCATTCGTTATTGCAACGGTGCAATTTCCATTGA

Protein Analysis

533

Amino Acids

61.69

Weight (kDa)

9.28

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 71 - 148 1.9e-08 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 234 - 506 1.2e-67 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 490
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 1335
AccII CGCG 1 cut(s) 17
AccIII TCCGGA 2 cut(s) 24, 1036
AclWI GGATC 3 cut(s) 328, 1107, 1223
AcsI RAATTY 2 cut(s) 152, 745
AcuI CTGAAG 5 cut(s) 275, 570, 702, 820, 1076
AfaI GTAC 3 cut(s) 422, 906, 1532
AfiI CCNNNNNNNGG 2 cut(s) 490, 1060
AflII CTTAAG 1 cut(s) 908
AgsI TTSAA 7 cut(s) 528, 735, 860, 886, 1129, 1280, 1513
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 2 cut(s) 356, 815
AluBI AGCT 6 cut(s) 229, 436, 545, 589, 834, 916
AluI AGCT 6 cut(s) 229, 436, 545, 589, 834, 916
Alw26I GTCTC 4 cut(s) 460, 572, 1148, 1160
AlwI GGATC 3 cut(s) 328, 1107, 1223
AlwNI CAGNNNCTG 1 cut(s) 337
Aor13HI TCCGGA 2 cut(s) 24, 1036
AoxI GGCC 3 cut(s) 29, 178, 813
ApeKI GCWGC 7 cut(s) 226, 350, 433, 545, 803, 913, 1480
ApoI RAATTY 2 cut(s) 152, 745
ArsI GACNNNNNNTTYG 2 cut(s) 1387, 1419
Asp700I GAANNNNTTC 1 cut(s) 1044
AspLEI GCGC 2 cut(s) 70, 1222
AsuC2I CCSGG 1 cut(s) 1371
AsuHPI GGTGA 3 cut(s) 523, 1196, 1291
BaeGI GKGCMC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 209
BauI CACGAG 1 cut(s) 1414
BbsI GAAGAC 2 cut(s) 685, 763
BbvI GCAGC 7 cut(s) 238, 337, 445, 532, 790, 925, 1467
BccI CCATC 3 cut(s) 118, 783, 1239
BceAI ACGGC 2 cut(s) 833, 1507
BciT130I CCWGG 2 cut(s) 358, 817
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 1 cut(s) 1371
BcoDI GTCTC 4 cut(s) 460, 572, 1148, 1160
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 2 cut(s) 594, 710
BfoI RGCGCY 1 cut(s) 71
BfrI CTTAAG 1 cut(s) 908
BglI GCCNNNNNGGC 1 cut(s) 37
Bme1390I CCNGG 3 cut(s) 358, 817, 1371
BmiI GGNNCC 1 cut(s) 992
BmrFI CCNGG 3 cut(s) 358, 817, 1371
BmsI GCATC 3 cut(s) 1225, 1314, 1399
BpiI GAAGAC 2 cut(s) 685, 763
BpuMI CCSGG 1 cut(s) 1371
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 3 cut(s) 15, 577, 1505
BsaWI WCCGGW 3 cut(s) 24, 1036, 1338
BsaXI ACNNNNNCTCC 4 cut(s) 420, 450, 834, 864
Bsc4I CCNNNNNNNGG 2 cut(s) 490, 1060
Bse118I RCCGGY 1 cut(s) 1301
Bse1I ACTGG 1 cut(s) 1322
Bse3DI GCAATG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 672
BseAI TCCGGA 2 cut(s) 24, 1036
BseBI CCWGG 2 cut(s) 358, 817
BseDI CCNNGG 3 cut(s) 15, 577, 1505
BseGI GGATG 5 cut(s) 705, 1081, 1250, 1263, 1414
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 490, 1060
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 3 cut(s) 228, 947, 1013
BseNI ACTGG 1 cut(s) 1322
BseRI GAGGAG 1 cut(s) 855
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 7 cut(s) 238, 337, 445, 532, 790, 925, 1467
BsgI GTGCAG 1 cut(s) 1466
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 3 cut(s) 31, 180, 815
BsiSI CCGG 6 cut(s) 25, 37, 1037, 1302, 1339, 1371
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 490, 1060
BsmAI GTCTC 4 cut(s) 460, 572, 1148, 1160
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 892
BsnI GGCC 3 cut(s) 31, 180, 815
Bsp1286I GDGCHC 2 cut(s) 209, 316
Bsp13I TCCGGA 2 cut(s) 24, 1036
Bsp143I GATC 6 cut(s) 333, 459, 1099, 1108, 1228, 1515
BspANI GGCC 3 cut(s) 31, 180, 815
BspCNI CTCAG 3 cut(s) 227, 946, 1014
BspEI TCCGGA 2 cut(s) 24, 1036
BspFNI CGCG 1 cut(s) 17
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 992
BspPI GGATC 3 cut(s) 328, 1107, 1223
BspQI GCTCTTC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 908
BsrBI CCGCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 1301
BsrI ACTGG 1 cut(s) 1322
BssAI RCCGGY 1 cut(s) 1301
BssECI CCNNGG 3 cut(s) 15, 577, 1505
BssMI GATC 6 cut(s) 333, 459, 1099, 1108, 1228, 1515
BssSI CACGAG 1 cut(s) 1414
BssT1I CCWWGG 1 cut(s) 577
Bst2BI CACGAG 1 cut(s) 1414
Bst2UI CCWGG 2 cut(s) 358, 817
Bst4CI ACNGT 6 cut(s) 376, 420, 1133, 1447, 1506, 1584
Bst6I CTCTTC 1 cut(s) 98
BstAFI CTTAAG 1 cut(s) 908
BstAPI GCANNNNNTGC 1 cut(s) 337
BstDEI CTNAG 3 cut(s) 214, 933, 1022
BstDSI CCRYGG 2 cut(s) 15, 1505
BstENI CCTNNNNNAGG 1 cut(s) 1058
BstF5I GGATG 5 cut(s) 705, 1081, 1250, 1263, 1414
BstFNI CGCG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 1222
BstKTI GATC 6 cut(s) 336, 462, 1102, 1111, 1231, 1518
BstMAI GTCTC 4 cut(s) 460, 572, 1148, 1160
BstMBI GATC 6 cut(s) 333, 459, 1099, 1108, 1228, 1515
BstMWI GCNNNNNNNGC 4 cut(s) 37, 40, 337, 812
BstNI CCWGG 2 cut(s) 358, 817
BstNSI RCATGY 1 cut(s) 1161
BstSCI CCNGG 3 cut(s) 356, 815, 1369
BstSLI GKGCMC 1 cut(s) 316
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 7 cut(s) 238, 337, 445, 532, 790, 925, 1467
BstV2I GAAGAC 2 cut(s) 685, 763
BstX2I RGATCY 2 cut(s) 333, 1099
BstYI RGATCY 2 cut(s) 333, 1099
BsuRI GGCC 3 cut(s) 31, 180, 815
BtgI CCRYGG 2 cut(s) 15, 1505
BtsCI GGATG 5 cut(s) 705, 1081, 1250, 1263, 1414
BtsIMutI CAGTG 1 cut(s) 406
CaiI CAGNNNCTG 1 cut(s) 337
CciI TCATGA 1 cut(s) 462
CfoI GCGC 2 cut(s) 70, 1222
Cfr10I RCCGGY 1 cut(s) 1301
Cfr42I CCGCGG 1 cut(s) 18
CseI GACGC 1 cut(s) 679
Csp6I GTAC 3 cut(s) 421, 905, 1531
CspCI CAANNNNNGTGG 2 cut(s) 1356, 1391
CviAII CATG 7 cut(s) 148, 457, 463, 879, 1009, 1158, 1162
CviQI GTAC 3 cut(s) 421, 905, 1531
DdeI CTNAG 3 cut(s) 214, 933, 1022
DpnI GATC 6 cut(s) 335, 461, 1101, 1110, 1230, 1517
DpnII GATC 6 cut(s) 333, 459, 1099, 1108, 1228, 1515
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 2 cut(s) 22, 985
Eco130I CCWWGG 1 cut(s) 577
Eco147I AGGCCT 2 cut(s) 180, 815
Eco24I GRGCYC 1 cut(s) 209
Eco57I CTGAAG 5 cut(s) 275, 570, 702, 820, 1076
EcoNI CCTNNNNNAGG 1 cut(s) 1058
EcoRII CCWGG 2 cut(s) 356, 815
EcoT14I CCWWGG 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 1163
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 7 cut(s) 151, 460, 466, 882, 1012, 1161, 1165
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FaqI GGGAC 1 cut(s) 542
FatI CATG 7 cut(s) 147, 456, 462, 878, 1008, 1157, 1161
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 1 cut(s) 1335
FokI GGATG 5 cut(s) 692, 1088, 1257, 1270, 1421
FriOI GRGCYC 1 cut(s) 209
FspBI CTAG 2 cut(s) 594, 710
GlaI GCGC 2 cut(s) 69, 1221
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 3 cut(s) 31, 180, 815
HapII CCGG 6 cut(s) 25, 37, 1037, 1302, 1339, 1371
HgaI GACGC 1 cut(s) 679
HhaI GCGC 2 cut(s) 70, 1222
Hin1II CATG 7 cut(s) 151, 460, 466, 882, 1012, 1161, 1165
Hin6I GCGC 2 cut(s) 68, 1220
HinP1I GCGC 2 cut(s) 68, 1220
HincII GTYRAC 2 cut(s) 1380, 1450
HindII GTYRAC 2 cut(s) 1380, 1450
HinfI GANTC 4 cut(s) 128, 319, 383, 923
HpaII CCGG 6 cut(s) 25, 37, 1037, 1302, 1339, 1371
HphI GGTGA 3 cut(s) 523, 1196, 1291
Hpy166II GTNNAC 3 cut(s) 1336, 1380, 1450
Hpy8I GTNNAC 3 cut(s) 1336, 1380, 1450
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 5 cut(s) 170, 299, 805, 1054, 1090
HpyCH4III ACNGT 6 cut(s) 376, 420, 1133, 1447, 1506, 1584
HpyCH4V TGCA 8 cut(s) 221, 353, 395, 806, 1161, 1483, 1579, 1587
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 40, 337, 812
HpyF3I CTNAG 3 cut(s) 214, 933, 1022
Hsp92II CATG 7 cut(s) 151, 460, 466, 882, 1012, 1161, 1165
HspAI GCGC 2 cut(s) 68, 1220
Kpn2I TCCGGA 2 cut(s) 24, 1036
Ksp22I TGATCA 1 cut(s) 459
KspI CCGCGG 1 cut(s) 18
Kzo9I GATC 6 cut(s) 333, 459, 1099, 1108, 1228, 1515
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 3 cut(s) 39, 441, 921
Lsp1109I GCAGC 7 cut(s) 238, 337, 445, 532, 790, 925, 1467
LweI GCATC 3 cut(s) 1225, 1314, 1399
MaeI CTAG 2 cut(s) 594, 710
MaeIII GTNAC 3 cut(s) 281, 781, 1297
MalI GATC 6 cut(s) 335, 461, 1101, 1110, 1230, 1517
MbiI CCGCTC 1 cut(s) 34
MboI GATC 6 cut(s) 333, 459, 1099, 1108, 1228, 1515
MboII GAAGA 7 cut(s) 85, 506, 563, 685, 763, 1069, 1525
MflI RGATCY 2 cut(s) 333, 1099
MhlI GDGCHC 2 cut(s) 209, 316
MluCI AATT 7 cut(s) 152, 168, 240, 305, 730, 745, 1588
MlyI GAGTC 2 cut(s) 137, 917
Mph1103I ATGCAT 1 cut(s) 1163
MroI TCCGGA 2 cut(s) 24, 1036
MroXI GAANNNNTTC 1 cut(s) 1044
MseI TTAA 6 cut(s) 117, 183, 308, 909, 1014, 1092
MslI CAYNNNNRTG 2 cut(s) 146, 461
MspA1I CMGCKG 2 cut(s) 17, 589
MspCI CTTAAG 1 cut(s) 908
MspI CCGG 6 cut(s) 25, 37, 1037, 1302, 1339, 1371
MspR9I CCNGG 3 cut(s) 358, 817, 1371
Mva1269I GAATGC 1 cut(s) 892
MvaI CCWGG 2 cut(s) 358, 817
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 37, 40, 337, 812
NciI CCSGG 1 cut(s) 1371
NdeII GATC 6 cut(s) 333, 459, 1099, 1108, 1228, 1515
NlaIII CATG 7 cut(s) 151, 460, 466, 882, 1012, 1161, 1165
NlaIV GGNNCC 1 cut(s) 992
NmeAIII GCCGAG 1 cut(s) 1335
NmuCI GTSAC 1 cut(s) 1297
NsiI ATGCAT 1 cut(s) 1163
NspI RCATGY 1 cut(s) 1161
PagI TCATGA 1 cut(s) 462
PceI AGGCCT 2 cut(s) 180, 815
PciSI GCTCTTC 1 cut(s) 98
PctI GAATGC 1 cut(s) 892
PdmI GAANNNNTTC 1 cut(s) 1044
PfeI GAWTC 2 cut(s) 319, 383
PflMI CCANNNNNTGG 1 cut(s) 490
PleI GAGTC 2 cut(s) 136, 917
PpsI GAGTC 2 cut(s) 136, 917
Psp6I CCWGG 2 cut(s) 356, 815
PspGI CCWGG 2 cut(s) 356, 815
PspN4I GGNNCC 1 cut(s) 992
PstNI CAGNNNCTG 1 cut(s) 337
PsuI RGATCY 2 cut(s) 333, 1099
PvuII CAGCTG 1 cut(s) 589
RsaI GTAC 3 cut(s) 422, 906, 1532
RsaNI GTAC 3 cut(s) 421, 905, 1531
RseI CAYNNNNRTG 2 cut(s) 146, 461
SacII CCGCGG 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 6 cut(s) 117, 183, 308, 909, 1014, 1092
Sau3AI GATC 6 cut(s) 333, 459, 1099, 1108, 1228, 1515
SchI GAGTC 2 cut(s) 137, 917
ScrFI CCNGG 3 cut(s) 358, 817, 1371
SduI GDGCHC 2 cut(s) 209, 316
SfaNI GCATC 3 cut(s) 1225, 1314, 1399
Sfr303I CCGCGG 1 cut(s) 18
SgrBI CCGCGG 1 cut(s) 18
SmiMI CAYNNNNRTG 2 cut(s) 146, 461
SmlI CTYRAG 1 cut(s) 908
SmoI CTYRAG 1 cut(s) 908
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 7 cut(s) 152, 168, 240, 305, 730, 745, 1588
SseBI AGGCCT 2 cut(s) 180, 815
SspI AATATT 1 cut(s) 187
SspMI CTAG 2 cut(s) 594, 710
StuI AGGCCT 2 cut(s) 180, 815
StyD4I CCNGG 3 cut(s) 356, 815, 1369
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 6 cut(s) 376, 420, 1133, 1447, 1506, 1584
TasI AATT 7 cut(s) 152, 168, 240, 305, 730, 745, 1588
TatI WGTACW 2 cut(s) 904, 1530
TauI GCSGC 3 cut(s) 17, 34, 43
TfiI GAWTC 2 cut(s) 319, 383
Tru1I TTAA 6 cut(s) 117, 183, 308, 909, 1014, 1092
Tru9I TTAA 6 cut(s) 117, 183, 308, 909, 1014, 1092
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 1 cut(s) 1297
TseI GCWGC 7 cut(s) 226, 350, 433, 545, 803, 913, 1480
Tsp45I GTSAC 1 cut(s) 1297
TspDTI ATGAA 7 cut(s) 85, 164, 671, 804, 824, 1274, 1450
TspGWI ACGGA 1 cut(s) 1404
TspRI CASTG 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 490
Vha464I CTTAAG 1 cut(s) 908
XagI CCTNNNNNAGG 1 cut(s) 1058
XapI RAATTY 2 cut(s) 152, 745
XceI RCATGY 1 cut(s) 1161
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 1335
XmnI GAANNNNTTC 1 cut(s) 1044
XspI CTAG 2 cut(s) 594, 710
Zsp2I ATGCAT 1 cut(s) 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.