Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006688

Physical Location & Seq

Genomic Coordinates Reverse (-)

10363754 .. 10366465

Gene Structure 2712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGAAGGCCTGAACATTACTGAAGAAATGTTGAGCCCCAACTCAGTCACCAGGCAGATCAGTGACCAAATAGCTCTGGCAAAAGCTTTCGTTGTGATTGCCAAAGAGAGCAACAACCTTCAGTTTGCATGGGAGTTAAGTGCCCAGATCCGCAACTCCCAGATTCTGCTGTCAAATGCTGCGACAAGGAGACCTTTGACAGCCAGAGAATCAGAAACTGCAATCCGTGATATGGCACTTGTACTGTACCAAGCACAGCTGCTCCATTACGATAGTGCAACCATGATTATGAGACTTAAAGCCAAAATACAATCTCTGGAAGAACAGATGAGTTCTGTGAGTGAGAAAAGTTCCAAGTATGGACAGATAGCTGCTGAGGAAGTCCCGAAAAGTCTTTACTGCCTTGGTATTCAGCTGACTAGTGAATGGTTCAGACACCCAAATCTACAGAGGAAACTCAAGGACAGAAAAATAGACATGAAAGTGAAGGATAACAATCTCTATCATTTCTGTGTATTCTCTGACAACATCCTGGCAACTTCAGTTGTGGTCAATTCAACAGCATTAAGTTCCAACAACCCAGATAAGGTCGTCTTCCATCTTGTAACCGATGAAATCAACTATGCTGCAATGAAGGCCTGGTTTTCTATGAACAGCTTCAGAGGAGTGACTGTCGAGGTTCAAAAGTTTGAGGACTTCAAATGGCTGAATGCTTCTTATGTTCCTGTGCTTAAGCAGCTCCAAGACTCTGAAACTCAAAGTTACTATTTTTCTGGAAACAGTGATGATGGCCGGACACCGATCAAGTTTCGGAACCCAAAGTATCTTTCTATGCTTAACCATCTGCGGTTTTATATTCCAGAAGTCTTTCCTGCCCTGAAGAAGGTGGTATTCCTTGATGATGATGTTGTTGTCCAGAAGGATCTGTCTGGTCTGTTCTCGATTGATTTGAATGGTAATGTAAATGGAGCAGTCGAGACATGCATGGAGACGTTTCACAGATACCATAAATATCTGAACTACTCTCACCCTCTCATACGATCACATTTTGATCCCGATGCCTGTGGATGGGCATTTGGAATGAATGTGTTTGATTTGGTTCAGTGGAGGAATAGGAATGTTACTGGCATCTACCATTACTGGCAGGAAAGAAATGTTGATCGGACATTGTGGAAACTTGGCACGTTGCCACCTGGATTGTTGACGTTCTATGGACTGACTGAGCCTTTGGAGCCCTCATGGCATGTTTTGGGTTTAGGGTACACAACTGTTGATCCTCATTTGATAGAGAAGGGTGCTGTGCTGCACTACAATGGAAACTCAAAACCGTGGTTGAAGATTGGGATGGAAAAGTACAAGCCCCTTTGGGAGAAATTTATTGATTATACTCATCCTTTGTTGCAACGATGCAATTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

473

Amino Acids

54.59

Weight (kDa)

7.69

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GAUT_1	PF25557	14 - 87	2e-09	Galacturonosyltransferase domain 1
Glyco_transf_8	PF01501	175 - 447	2.3e-69	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20810
fragaria_vesca	FvH4_6g44800
malus_domestica	MD09G1093100.v1.1 MD17G1083200.v1.1
prunus_persica	Prupe.3G232100_v2.0.a1
pyrus_communis	pycom09g01830 pycom17g08100
rosa_chinensis	RchiOBHm_Chr2g0161971 RchiOBHm_Chr6g0254251
rosa_laevigata	RLG00000014931 RLG00000021312
rosa_multiflora	Rmu_sc0003711.1_g000023 Rmu_sc0008428.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088430 Rroxscaffold_7G00211000 Rroxscaffold_7G00211020
rosa_rugosa	Rorug02G0493700
rosa_samantha	Rh2AG559600 Rh2BG573000 Rh2CG543100 Rh2DG582800 Rh6AG067500 Rh6BG060600 Rh6DG057600
rosa_wichuraiana	Rw2G046310 Rw6G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	151, 847
AclWI	GGATC	4 cut(s)	142, 930, 1046, 1268
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	1 cut(s)	1373
AcuI	CTGAAG	5 cut(s)	42, 104, 525, 643, 899
AfaI	GTAC	4 cut(s)	243, 248, 1262, 1355
AfiI	CCNNNNNNNGG	4 cut(s)	232, 586, 883, 1068
AflII	CTTAAG	1 cut(s)	731
AgsI	TTSAA	5 cut(s)	558, 683, 700, 952, 1336
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	4 cut(s)	50, 531, 638, 1192
AjuI	GAANNNNNNNTTGG	2 cut(s)	811, 843
AluBI	AGCT	7 cut(s)	74, 86, 259, 371, 415, 657, 739
AluI	AGCT	7 cut(s)	74, 86, 259, 371, 415, 657, 739
Alw26I	GTCTC	4 cut(s)	184, 286, 971, 983
AlwI	GGATC	4 cut(s)	142, 930, 1046, 1268
AlwNI	CAGNNNCTG	2 cut(s)	166, 218
AoxI	GGCC	3 cut(s)	7, 636, 790
ApeKI	GCWGC	6 cut(s)	179, 259, 371, 626, 736, 1303
ApoI	RAATTY	1 cut(s)	1373
ArsI	GACNNNNNNTTYG	2 cut(s)	1210, 1242
Asp700I	GAANNNNTTC	2 cut(s)	656, 867
AsuHPI	GGTGA	2 cut(s)	40, 1019
BaeGI	GKGCMC	1 cut(s)	145
BanII	GRGCYC	2 cut(s)	38, 1236
BbsI	GAAGAC	1 cut(s)	586
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	6 cut(s)	166, 246, 358, 613, 748, 1290
BccI	CCATC	5 cut(s)	606, 782, 849, 1062, 1339
BciT130I	CCWGG	4 cut(s)	52, 533, 640, 1194
BcoDI	GTCTC	4 cut(s)	184, 286, 971, 983
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	446
BfrI	CTTAAG	1 cut(s)	731
BglI	GCCNNNNNGGC	1 cut(s)	1240
BisI	GCNGC	6 cut(s)	180, 260, 372, 627, 737, 1304
BlsI	GCNGC	6 cut(s)	181, 261, 373, 628, 738, 1305
Bme1390I	CCNGG	4 cut(s)	52, 533, 640, 1194
BmiI	GGNNCC	2 cut(s)	815, 1233
BmrFI	CCNGG	4 cut(s)	52, 533, 640, 1194
BmsI	GCATC	3 cut(s)	1048, 1137, 1397
BpiI	GAAGAC	1 cut(s)	586
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	403, 1328
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 657, 687
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 586, 883, 1068
Bse1I	ACTGG	2 cut(s)	1129, 1145
Bse3DI	GCAATG	1 cut(s)	636
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	4 cut(s)	52, 533, 640, 1194
BseDI	CCNNGG	2 cut(s)	403, 1328
BseGI	GGATG	4 cut(s)	528, 1073, 1350, 1390
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	4 cut(s)	232, 586, 883, 1068
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	3 cut(s)	57, 366, 1212
BseNI	ACTGG	2 cut(s)	1129, 1145
BseRI	GAGGAG	1 cut(s)	678
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	6 cut(s)	166, 246, 358, 613, 748, 1290
BsgI	GTGCAG	1 cut(s)	1289
BshFI	GGCC	3 cut(s)	9, 638, 792
BsiSI	CCGG	1 cut(s)	793
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	4 cut(s)	232, 586, 883, 1068
BsmAI	GTCTC	4 cut(s)	184, 286, 971, 983
BsmBI	CGTCTC	1 cut(s)	983
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	3 cut(s)	9, 638, 792
Bso31I	GGTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	3 cut(s)	38, 145, 1236
Bsp143I	GATC	8 cut(s)	57, 147, 801, 922, 1040, 1051, 1159, 1273
BspACI	CCGC	2 cut(s)	151, 847
BspANI	GGCC	3 cut(s)	9, 638, 792
BspCNI	CTCAG	3 cut(s)	56, 367, 1213
BspLI	GGNNCC	2 cut(s)	815, 1233
BspPI	GGATC	4 cut(s)	142, 930, 1046, 1268
BspTI	CTTAAG	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	636
BsrI	ACTGG	2 cut(s)	1129, 1145
BssECI	CCNNGG	2 cut(s)	403, 1328
BssMI	GATC	8 cut(s)	57, 147, 801, 922, 1040, 1051, 1159, 1273
BssT1I	CCWWGG	1 cut(s)	403
Bst2UI	CCWGG	4 cut(s)	52, 533, 640, 1194
Bst4CI	ACNGT	5 cut(s)	246, 673, 782, 1270, 1329
BstAFI	CTTAAG	1 cut(s)	731
BstDEI	CTNAG	3 cut(s)	43, 375, 1221
BstDSI	CCRYGG	1 cut(s)	1328
BstENI	CCTNNNNNAGG	1 cut(s)	881
BstF5I	GGATG	4 cut(s)	528, 1073, 1350, 1390
BstKTI	GATC	8 cut(s)	60, 150, 804, 925, 1043, 1054, 1162, 1276
BstMAI	GTCTC	4 cut(s)	184, 286, 971, 983
BstMBI	GATC	8 cut(s)	57, 147, 801, 922, 1040, 1051, 1159, 1273
BstMWI	GCNNNNNNNGC	4 cut(s)	635, 736, 1231, 1240
BstNI	CCWGG	4 cut(s)	52, 533, 640, 1194
BstNSI	RCATGY	2 cut(s)	984, 1247
BstSCI	CCNGG	4 cut(s)	50, 531, 638, 1192
BstSFI	CTRYAG	1 cut(s)	446
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	6 cut(s)	166, 246, 358, 613, 748, 1290
BstV2I	GAAGAC	1 cut(s)	586
BstX2I	RGATCY	2 cut(s)	147, 922
BstYI	RGATCY	2 cut(s)	147, 922
BsuRI	GGCC	3 cut(s)	9, 638, 792
BtgI	CCRYGG	1 cut(s)	1328
BtsCI	GGATG	4 cut(s)	528, 1073, 1350, 1390
BtsIMutI	CAGTG	3 cut(s)	67, 787, 1109
CaiI	CAGNNNCTG	2 cut(s)	166, 218
Csp6I	GTAC	4 cut(s)	242, 247, 1261, 1354
CspCI	CAANNNNNGTGG	2 cut(s)	1179, 1214
CviAII	CATG	7 cut(s)	129, 283, 478, 981, 985, 1239, 1244
CviQI	GTAC	4 cut(s)	242, 247, 1261, 1354
DdeI	CTNAG	3 cut(s)	43, 375, 1221
DpnI	GATC	8 cut(s)	59, 149, 803, 924, 1042, 1053, 1161, 1275
DpnII	GATC	8 cut(s)	57, 147, 801, 922, 1040, 1051, 1159, 1273
EaeI	YGGCCR	1 cut(s)	790
Eco130I	CCWWGG	1 cut(s)	403
Eco147I	AGGCCT	2 cut(s)	9, 638
Eco24I	GRGCYC	2 cut(s)	38, 1236
Eco31I	GGTCTC	1 cut(s)	184
Eco57I	CTGAAG	5 cut(s)	42, 104, 525, 643, 899
EcoNI	CCTNNNNNAGG	1 cut(s)	881
EcoRII	CCWGG	4 cut(s)	50, 531, 638, 1192
EcoT14I	CCWWGG	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	986
EcoT38I	GRGCYC	2 cut(s)	38, 1236
ErhI	CCWWGG	1 cut(s)	403
Esp3I	CGTCTC	1 cut(s)	983
FaeI	CATG	7 cut(s)	132, 286, 481, 984, 988, 1242, 1247
FalI	AAGNNNNNCTT	4 cut(s)	178, 210, 578, 610
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	7 cut(s)	128, 282, 477, 980, 984, 1238, 1243
Fnu4HI	GCNGC	6 cut(s)	180, 260, 372, 627, 737, 1304
FokI	GGATG	4 cut(s)	515, 1080, 1357, 1377
FriOI	GRGCYC	2 cut(s)	38, 1236
Fsp4HI	GCNGC	6 cut(s)	180, 260, 372, 627, 737, 1304
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	6 cut(s)	180, 260, 372, 627, 737, 1304
HaeIII	GGCC	3 cut(s)	9, 638, 792
HapII	CCGG	1 cut(s)	793
Hin1II	CATG	7 cut(s)	132, 286, 481, 984, 988, 1242, 1247
HincII	GTYRAC	1 cut(s)	1203
HindII	GTYRAC	1 cut(s)	1203
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	3 cut(s)	163, 209, 746
HpaII	CCGG	1 cut(s)	793
HphI	GGTGA	2 cut(s)	40, 1019
Hpy166II	GTNNAC	2 cut(s)	1203, 1263
Hpy188I	TCNGA	8 cut(s)	214, 434, 523, 662, 751, 813, 1017, 1164
Hpy188III	TCNNGA	8 cut(s)	317, 385, 774, 860, 916, 940, 976, 1055
Hpy8I	GTNNAC	2 cut(s)	1203, 1263
HpyAV	CCTTC	6 cut(s)	128, 481, 628, 877, 913, 1285
HpyCH4III	ACNGT	5 cut(s)	246, 673, 782, 1270, 1329
HpyCH4IV	ACGT	3 cut(s)	992, 1184, 1205
HpyCH4V	TGCA	8 cut(s)	128, 221, 278, 629, 984, 1306, 1402, 1410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	635, 736, 1231, 1240
HpyF3I	CTNAG	3 cut(s)	43, 375, 1221
HpySE526I	ACGT	3 cut(s)	992, 1184, 1205
Hsp92II	CATG	7 cut(s)	132, 286, 481, 984, 988, 1242, 1247
Kzo9I	GATC	8 cut(s)	57, 147, 801, 922, 1040, 1051, 1159, 1273
LmnI	GCTCC	4 cut(s)	267, 744, 968, 1231
Lsp1109I	GCAGC	6 cut(s)	166, 246, 358, 613, 748, 1290
LweI	GCATC	3 cut(s)	1048, 1137, 1397
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	3 cut(s)	992, 1184, 1205
MaeIII	GTNAC	6 cut(s)	46, 62, 604, 667, 761, 1120
MalI	GATC	8 cut(s)	59, 149, 803, 924, 1042, 1053, 1161, 1275
MboI	GATC	8 cut(s)	57, 147, 801, 922, 1040, 1051, 1159, 1273
MboII	GAAGA	5 cut(s)	35, 332, 586, 892, 1348
MflI	RGATCY	2 cut(s)	147, 922
MhlI	GDGCHC	3 cut(s)	38, 145, 1236
MluCI	AATT	3 cut(s)	553, 1373, 1411
MlyI	GAGTC	1 cut(s)	740
MmeI	TCCRAC	1 cut(s)	597
MnlI	CCTC	9 cut(s)	370, 444, 656, 670, 685, 1041, 1101, 1246, 1287
Mph1103I	ATGCAT	1 cut(s)	986
MroXI	GAANNNNTTC	2 cut(s)	656, 867
MseI	TTAA	5 cut(s)	137, 297, 566, 732, 837
MslI	CAYNNNNRTG	4 cut(s)	287, 482, 510, 1311
MspA1I	CMGCKG	2 cut(s)	259, 415
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	1 cut(s)	793
MspR9I	CCNGG	4 cut(s)	52, 533, 640, 1194
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	4 cut(s)	52, 533, 640, 1194
MwoI	GCNNNNNNNGC	4 cut(s)	635, 736, 1231, 1240
NdeII	GATC	8 cut(s)	57, 147, 801, 922, 1040, 1051, 1159, 1273
NlaIII	CATG	7 cut(s)	132, 286, 481, 984, 988, 1242, 1247
NlaIV	GGNNCC	2 cut(s)	815, 1233
NmuCI	GTSAC	3 cut(s)	46, 62, 667
NsiI	ATGCAT	1 cut(s)	986
NspI	RCATGY	2 cut(s)	984, 1247
PceI	AGGCCT	2 cut(s)	9, 638
PctI	GAATGC	1 cut(s)	715
PdmI	GAANNNNTTC	2 cut(s)	656, 867
PfeI	GAWTC	2 cut(s)	163, 209
PkrI	GCNGC	6 cut(s)	181, 261, 373, 628, 738, 1305
PleI	GAGTC	1 cut(s)	740
PpsI	GAGTC	1 cut(s)	740
Psp6I	CCWGG	4 cut(s)	50, 531, 638, 1192
PspGI	CCWGG	4 cut(s)	50, 531, 638, 1192
PspN4I	GGNNCC	2 cut(s)	815, 1233
PstNI	CAGNNNCTG	2 cut(s)	166, 218
PsuI	RGATCY	2 cut(s)	147, 922
PvuII	CAGCTG	2 cut(s)	259, 415
RsaI	GTAC	4 cut(s)	243, 248, 1262, 1355
RsaNI	GTAC	4 cut(s)	242, 247, 1261, 1354
RseI	CAYNNNNRTG	4 cut(s)	287, 482, 510, 1311
SaqAI	TTAA	5 cut(s)	137, 297, 566, 732, 837
SatI	GCNGC	6 cut(s)	180, 260, 372, 627, 737, 1304
Sau3AI	GATC	8 cut(s)	57, 147, 801, 922, 1040, 1051, 1159, 1273
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	4 cut(s)	52, 533, 640, 1194
SduI	GDGCHC	3 cut(s)	38, 145, 1236
SfaNI	GCATC	3 cut(s)	1048, 1137, 1397
SfcI	CTRYAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	4 cut(s)	287, 482, 510, 1311
SmlI	CTYRAG	2 cut(s)	458, 731
SmoI	CTYRAG	2 cut(s)	458, 731
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	3 cut(s)	553, 1373, 1411
SseBI	AGGCCT	2 cut(s)	9, 638
SsiI	CCGC	2 cut(s)	151, 847
SspMI	CTAG	1 cut(s)	420
StuI	AGGCCT	2 cut(s)	9, 638
StyD4I	CCNGG	4 cut(s)	50, 531, 638, 1192
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	5 cut(s)	246, 673, 782, 1270, 1329
TaiI	ACGT	3 cut(s)	995, 1187, 1208
TaqI	TCGA	3 cut(s)	675, 941, 975
TasI	AATT	3 cut(s)	553, 1373, 1411
TatI	WGTACW	2 cut(s)	241, 1353
TfiI	GAWTC	2 cut(s)	163, 209
Tru1I	TTAA	5 cut(s)	137, 297, 566, 732, 837
Tru9I	TTAA	5 cut(s)	137, 297, 566, 732, 837
TscAI	CASTG	3 cut(s)	67, 787, 1109
TseFI	GTSAC	3 cut(s)	46, 62, 667
TseI	GCWGC	6 cut(s)	179, 259, 371, 626, 736, 1303
Tsp45I	GTSAC	3 cut(s)	46, 62, 667
TspDTI	ATGAA	5 cut(s)	494, 627, 647, 665, 1097
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	3 cut(s)	67, 787, 1109
Vha464I	CTTAAG	1 cut(s)	731
XagI	CCTNNNNNAGG	1 cut(s)	881
XapI	RAATTY	1 cut(s)	1373
XceI	RCATGY	2 cut(s)	984, 1247
XmnI	GAANNNNTTC	2 cut(s)	656, 867
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	1 cut(s)	986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.